Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:16 (836373): wrapper (7.7.26015): starting
00:13:16 (836373): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:13:16] Arguments: --nthreads 12
[2025-11-25 00:13:16] Threads: 12
[2025-11-25 00:13:16] Checking for CVMFS
[2025-11-25 00:13:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:13:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:13:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:13:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:13:18] 2.13.2.0 8790 33964 256464 153271 3 57 30547420 40960001 12710 16776704 0 32006153 99.673 24559742 36621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:13:18] CVMFS is ok
[2025-11-25 00:13:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:13:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:13:18] Further information can be found at the LHC@home message board.
[2025-11-25 00:13:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:13:18] Checking for apptainer binary...
[2025-11-25 00:13:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:13:18] Running /usr/bin/apptainer --version
[2025-11-25 00:13:18] apptainer version 1.4.4-1.el9
[2025-11-25 00:13:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:13:19] c-210-33-1.aglt2.org
[2025-11-25 00:13:19] apptainer works
[2025-11-25 00:13:19] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:13:19] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:13:19] Starting ATLAS job with PandaID=6896044258
[2025-11-25 00:13:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:11:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:11:57] 2025-11-25 21:23:34,371 | INFO     | time since job start (58156s) is within the limit (172800.0s)
[2025-11-25 17:11:57] 2025-11-25 21:23:36,342 | INFO     | monitor loop #3574: job 0:6896044258 is in state 'finished'
[2025-11-25 17:11:57] 2025-11-25 21:23:36,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:11:57] 2025-11-25 21:23:36,385 | INFO     | time since job start (58158s) is within the limit (172800.0s)
[2025-11-25 17:11:57] 2025-11-25 21:23:38,392 | INFO     | time since job start (58160s) is within the limit (172800.0s)
[2025-11-25 17:11:57] 2025-11-25 21:23:38,851 | INFO     | monitor loop #3575: job 0:6896044258 is in state 'finished'
[2025-11-25 17:11:57] 2025-11-25 21:23:38,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:11:57] 2025-11-25 21:23:40,400 | INFO     | time since job start (58162s) is within the limit (172800.0s)
[2025-11-25 17:11:57] 2025-11-25 21:23:41,359 | INFO     | monitor loop #3576: job 0:6896044258 is in state 'finished'
[2025-11-25 17:11:57] 2025-11-25 21:23:41,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:11:57] 2025-11-25 21:23:42,407 | INFO     | time since job start (58164s) is within the limit (172800.0s)
[2025-11-25 17:11:57] 2025-11-25 21:23:43,873 | INFO     | monitor loop #3577: job 0:6896044258 is in state 'finished'
[2025-11-25 17:11:57] 2025-11-25 21:23:43,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:11:57] 2025-11-25 21:23:44,414 | INFO     | time since job start (58166s) is within the limit (172800.0s)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,250 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 17:11:57] 2025-11-25 21:23:46,303 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2731.168267857143
[2025-11-25 17:11:57] 2025-11-25 21:23:46,370 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896044258/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,371 | INFO     | extracted standard info from prmon json
[2025-11-25 17:11:57] 2025-11-25 21:23:46,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:11:57] 2025-11-25 21:23:46,389 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:11:57] 2025-11-25 21:23:46,440 | INFO     | time since job start (58168s) is within the limit (172800.0s)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,454 | INFO     | monitor loop #3578: job 0:6896044258 is in state 'finished'
[2025-11-25 17:11:57] 2025-11-25 21:23:46,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,496 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:11:57] 2025-11-25 21:23:46,527 | INFO     | sum of square deviations: 266643816993.9897
[2025-11-25 17:11:57] 2025-11-25 21:23:46,705 | INFO     | sum of deviations: 2499635497792.838
[2025-11-25 17:11:57] 2025-11-25 21:23:46,706 | INFO     | mean x: 1764076784.0325973
[2025-11-25 17:11:57] 2025-11-25 21:23:46,706 | INFO     | mean y: 3482428.4889589907
[2025-11-25 17:11:57] 2025-11-25 21:23:46,706 | INFO     | intersect: -16533743147.979233
[2025-11-25 17:11:57] 2025-11-25 21:23:46,732 | INFO     | chi2: 16.693438472175625
[2025-11-25 17:11:57] 2025-11-25 21:23:46,733 | INFO     | sum of square deviations: 262462790713.7462
[2025-11-25 17:11:57] 2025-11-25 21:23:46,797 | INFO     | sum of deviations: 2912827556937.0474
[2025-11-25 17:11:57] 2025-11-25 21:23:46,797 | INFO     | mean x: 1764076631.5961945
[2025-11-25 17:11:57] 2025-11-25 21:23:46,797 | INFO     | mean y: 3497488.735729387
[2025-11-25 17:11:57] 2025-11-25 21:23:46,797 | INFO     | intersect: -19574329185.62249
[2025-11-25 17:11:57] 2025-11-25 21:23:46,799 | INFO     | chi2: 12.959158912144613
[2025-11-25 17:11:57] 2025-11-25 21:23:46,799 | INFO     | current chi2=12.959158912144613 (change=22.369744652997966 %)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,799 | INFO     | right removable region: 945
[2025-11-25 17:11:57] 2025-11-25 21:23:46,800 | INFO     | sum of square deviations: 262455868273.93787
[2025-11-25 17:11:57] 2025-11-25 21:23:46,823 | INFO     | sum of deviations: 2042478026387.026
[2025-11-25 17:11:57] 2025-11-25 21:23:46,823 | INFO     | mean x: 1764076936.5951374
[2025-11-25 17:11:57] 2025-11-25 21:23:46,823 | INFO     | mean y: 3499078.310782241
[2025-11-25 17:11:57] 2025-11-25 21:23:46,823 | INFO     | intersect: -13724859916.089714
[2025-11-25 17:11:57] 2025-11-25 21:23:46,824 | INFO     | chi2: 12.682589415833576
[2025-11-25 17:11:57] 2025-11-25 21:23:46,825 | INFO     | current chi2=12.682589415833576 (change=24.026500370353734 %)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,825 | INFO     | left removable region: 10
[2025-11-25 17:11:57] 2025-11-25 21:23:46,826 | INFO     | sum of square deviations: 253405414311.17215
[2025-11-25 17:11:57] 2025-11-25 21:23:46,848 | INFO     | sum of deviations: 2208173067440.432
[2025-11-25 17:11:57] 2025-11-25 21:23:46,848 | INFO     | mean x: 1764076906.233155
[2025-11-25 17:11:57] 2025-11-25 21:23:46,848 | INFO     | mean y: 3529124.1860962566
[2025-11-25 17:11:57] 2025-11-25 21:23:46,848 | INFO     | intersect: -15368625112.63817
[2025-11-25 17:11:57] 2025-11-25 21:23:46,850 | INFO     | chi2: 6.227982699018809
[2025-11-25 17:11:57] 2025-11-25 21:23:46,850 | INFO     | current memory leak: 8.71 B/s (using 935 data points, chi2=6.23)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,852 | INFO     | could have reported an average CPU frequency of 2810 MHz (35 samples)
[2025-11-25 17:11:57] 2025-11-25 21:23:46,852 | INFO     | ..............................
[2025-11-25 17:11:57] 2025-11-25 21:23:46,852 | INFO     | . Timing measurements:
[2025-11-25 17:11:57] 2025-11-25 21:23:46,852 | INFO     | . get job = 0 s
[2025-11-25 17:11:57] 2025-11-25 21:23:46,853 | INFO     | . initial setup = 6 s
[2025-11-25 17:11:57] 2025-11-25 21:23:46,853 | INFO     | . payload setup = 39 s
[2025-11-25 17:11:57] 2025-11-25 21:23:46,853 | INFO     | . stage-in = 0 s
[2025-11-25 17:11:57] 2025-11-25 21:23:46,853 | INFO     | . payload execution = 57988 s
[2025-11-25 17:11:57] 2025-11-25 21:23:46,853 | INFO     | . stage-out = 20 s
[2025-11-25 17:11:57] 2025-11-25 21:23:46,853 | INFO     | . log creation = 4 s
[2025-11-25 17:11:57] 2025-11-25 21:23:46,853 | INFO     | ..............................
[2025-11-25 17:11:57] 2025-11-25 21:23:47,365 | INFO     | 
[2025-11-25 17:11:57] 2025-11-25 21:23:47,365 | INFO     | job summary report
[2025-11-25 17:11:57] 2025-11-25 21:23:47,365 | INFO     | --------------------------------------------------
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | PanDA job id: 6896044258
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | task id: 47556173
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | errors: (none)
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | pilot state: finished 
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | transexitcode: 0
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | exeerrorcode: 0
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | exeerrordiag: 
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | exitcode: 0
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | exitmsg: OK
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | cpuconsumptiontime: 241083 s
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | nevents: 1000
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | neventsw: 0
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | pid: 857698
[2025-11-25 17:11:57] 2025-11-25 21:23:47,366 | INFO     | pgrp: 857698
[2025-11-25 17:11:57] 2025-11-25 21:23:47,367 | INFO     | corecount: 12
[2025-11-25 17:11:57] 2025-11-25 21:23:47,367 | INFO     | event service: False
[2025-11-25 17:11:57] 2025-11-25 21:23:47,367 | INFO     | sizes: {0: 2284134, 1: 2284333, 12: 2284333, 23: 2284361, 34: 2284679, 45: 2284679, 58033: 2336754, 58035: 2336753, 58056: 2345808, 58057: 2345864, 58098: 2346110}
[2025-11-25 17:11:57] 2025-11-25 21:23:47,367 | INFO     | --------------------------------------------------
[2025-11-25 17:11:57] 2025-11-25 21:23:47,367 | INFO     | 
[2025-11-25 17:11:57] 2025-11-25 21:23:47,367 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 17:11:57] 2025-11-25 21:23:47,390 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,399 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,399 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:11:57] 2025-11-25 21:23:47,401 | INFO     | job 6896044258 has completed (purged errors)
[2025-11-25 17:11:57] 2025-11-25 21:23:47,402 | INFO     | overall cleanup function is called
[2025-11-25 17:11:57] 2025-11-25 21:23:48,497 | INFO     | --- collectZombieJob: --- 10, [857698]
[2025-11-25 17:11:57] 2025-11-25 21:23:48,497 | INFO     | zombie collector waiting for pid 857698
[2025-11-25 17:11:57] 2025-11-25 21:23:48,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:11:57] 2025-11-25 21:23:48,498 | INFO     | collected zombie processes
[2025-11-25 17:11:57] 2025-11-25 21:23:48,498 | INFO     | will attempt to kill all subprocesses of pid=857698
[2025-11-25 17:11:57] 2025-11-25 21:23:49,499 | INFO     | process IDs to be killed: [857698] (in reverse order)
[2025-11-25 17:11:57] 2025-11-25 21:23:49,726 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:11:57] 2025-11-25 21:23:49,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:11:57] 2025-11-25 21:23:49,750 | INFO     | did not find any defunct processes belonging to 857698
[2025-11-25 17:11:57] 2025-11-25 21:23:49,764 | INFO     | did not find any defunct processes belonging to 857698
[2025-11-25 17:11:57] 2025-11-25 21:23:49,788 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:11:57] 2025-11-25 21:23:49,788 | INFO     | ready for new job
[2025-11-25 17:11:57] 2025-11-25 21:23:49,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:11:57] 2025-11-25 21:23:49,796 | INFO     | ***************************************
[2025-11-25 17:11:57] 2025-11-25 21:23:49,797 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:11:57] 2025-11-25 21:23:49,797 | INFO     | ***************************************
[2025-11-25 17:11:57] 2025-11-25 21:23:49,797 | INFO     | 
[2025-11-25 17:11:57] 2025-11-25 21:23:49,806 | INFO     | architecture information:
[2025-11-25 17:11:57] 2025-11-25 21:23:49,814 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:11:57] 2025-11-25 21:23:49,864 | INFO     | cat /etc/os-release:
[2025-11-25 17:11:57] NAME="CentOS Linux"
[2025-11-25 17:11:57] VERSION="7 (Core)"
[2025-11-25 17:11:57] ID="centos"
[2025-11-25 17:11:57] ID_LIKE="rhel fedora"
[2025-11-25 17:11:57] VERSION_ID="7"
[2025-11-25 17:11:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:11:57] ANSI_COLOR="0;31"
[2025-11-25 17:11:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:11:57] HOME_URL="https://www.centos.org/"
[2025-11-25 17:11:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:11:57] 
[2025-11-25 17:11:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:11:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:11:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:11:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:11:57] 
[2025-11-25 17:11:57] 2025-11-25 21:23:49,865 | INFO     | ***************************************
[2025-11-25 17:11:57] 2025-11-25 21:23:50,368 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 17:11:57] 2025-11-25 21:23:50,432 | INFO     | sufficient remaining disk space (70659342336 B)
[2025-11-25 17:11:57] 2025-11-25 21:23:50,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:11:57] 2025-11-25 21:23:50,433 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:11:57] 2025-11-25 21:23:50,433 | INFO     | update_server=False
[2025-11-25 17:11:57] 2025-11-25 21:23:50,433 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:11:57] 2025-11-25 21:23:50,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:11:57] 2025-11-25 21:23:50,433 | INFO     | aborting loop
[2025-11-25 17:11:57] 2025-11-25 21:23:50,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:11:57] 2025-11-25 21:23:50,931 | INFO     | all data control threads have been joined
[2025-11-25 17:11:57] 2025-11-25 21:23:51,437 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:51,438 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:51,519 | INFO     | all payload control threads have been joined
[2025-11-25 17:11:57] 2025-11-25 21:23:51,589 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:51,937 | INFO     | [data] control thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:51,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:11:57] 2025-11-25 21:23:52,068 | INFO     | all job control threads have been joined
[2025-11-25 17:11:57] 2025-11-25 21:23:52,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:11:57] 2025-11-25 21:23:52,428 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,430 | INFO     | [job] validate thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,450 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,456 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,489 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,491 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,525 | INFO     | [payload] control thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,602 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,636 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:52,994 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:53,074 | INFO     | [job] control thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:23:56,341 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:11:57] 2025-11-25 21:24:04,822 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:11:57] 2025-11-25 21:24:06,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647888181056)>', '<ExcThread(monitor, started 139647011243776)>']
[2025-11-25 17:11:57] 2025-11-25 21:24:11,490 | INFO     | all workflow threads have been joined
[2025-11-25 17:11:57] 2025-11-25 21:24:11,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:11:57] 2025-11-25 21:24:11,492 | INFO     | traces error code: 0
[2025-11-25 17:11:57] 2025-11-25 21:24:11,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:11:57] 2025-11-25 21:24:21,607 | INFO     | PID=843196 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 17:11:57] 2025-11-25 21:24:21,607 | INFO     | .. there are 11 such processes running
[2025-11-25 17:11:57] 2025-11-25 21:24:21,607 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:11:57] 2025-11-25 21:24:21,607 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:11:57] 2025-11-25 21:24:21,607 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:11:57] 2025-11-25 21:24:21,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:11:57] 2025-11-25 21:24:21,607 | INFO     | [monitor] control thread has ended
[2025-11-25 17:11:57] 2025-11-25 21:24:21,792 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:11:57] 2025-11-25 21:24:21,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:11:57] 2025-11-25 21:24:21,842 [wrapper] pilotpid: 843196
[2025-11-25 17:11:57] 2025-11-25 21:24:21,865 [wrapper] Pilot exit status: 0
[2025-11-25 17:11:57] 2025-11-25 21:24:22,018 [wrapper] pandaids: 6896044258
[2025-11-25 17:11:57] 2025-11-25 21:24:22,528 [wrapper] cleanup supervisor_pilot 2301191 843197
[2025-11-25 17:11:57] 2025-11-25 21:24:22,531 [wrapper] Test setup, not cleaning
[2025-11-25 17:11:57] 2025-11-25 21:24:22,537 [wrapper] apfmon messages muted
[2025-11-25 17:11:57] 2025-11-25 21:24:22,573 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:11:57] 2025-11-25 21:24:22,611 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:11:57]  *** Error codes and diagnostics ***
[2025-11-25 17:11:57]     "exeErrorCode": 0,
[2025-11-25 17:11:57]     "exeErrorDiag": "",
[2025-11-25 17:11:57]     "pilotErrorCode": 0,
[2025-11-25 17:11:57]     "pilotErrorDiag": "",
[2025-11-25 17:11:57]  *** Listing of results directory ***
[2025-11-25 17:11:57] total 1313992
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:03 queuedata.json
[2025-11-25 17:11:57] -rwx------. 1 boincer umatlas     36292 Nov 24 13:05 runpilot2-wrapper.sh
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:11:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:13 run_atlas
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:13 job.xml
[2025-11-25 17:11:57] -rw-r--r--. 2 boincer umatlas 410857691 Nov 25 00:13 EVNT.47483658._003026.pool.root.1
[2025-11-25 17:11:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:13 start_atlas.sh
[2025-11-25 17:11:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:13 shared
[2025-11-25 17:11:57] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:13 input.tar.gz
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:13 boinc_lockfile
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 00:13 pandaJob.out
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas        57 Nov 25 00:13 setup.sh.local
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas    991801 Nov 25 00:14 agis_schedconf.cvmfs.json
[2025-11-25 17:11:57] drwx------. 5 boincer umatlas      4096 Nov 25 00:14 pilot3
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas       533 Nov 25 15:45 boinc_task_state.xml
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas 910681326 Nov 25 16:20 HITS.47556173._000090.pool.root.1
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas      1059 Nov 25 16:22 memory_monitor_summary.json
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas   1516240 Nov 25 16:22 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas   2569731 Nov 25 16:23 log.47556173._000090.job.log.tgz.1
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas      8625 Nov 25 16:23 heartbeat.json
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas        95 Nov 25 16:23 pilot_heartbeat.json
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas       822 Nov 25 16:24 pilotlog.txt
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas   7462910 Nov 25 16:24 log.47556173._000090.job.log.1
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas       353 Nov 25 16:24 output.list
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas       620 Nov 25 16:24 runtime_log
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas  10055680 Nov 25 16:24 result.tar.gz
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas       662 Nov 25 16:24 zG0NDm76ph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1pLKDmWsdr5n.diag
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas      9355 Nov 25 16:24 runtime_log.err
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 17:11 init_data.xml
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 17:11 boinc_mmap_file
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas        29 Nov 25 17:11 wrapper_checkpoint.txt
[2025-11-25 17:11:57] -rw-r--r--. 1 boincer umatlas     21812 Nov 25 17:11 stderr.txt
[2025-11-25 17:11:57] HITS file was successfully produced:
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas 910681326 Nov 25 16:20 shared/HITS.pool.root.1
[2025-11-25 17:11:57]  *** Contents of shared directory: ***
[2025-11-25 17:11:57] total 1300996
[2025-11-25 17:11:57] -rw-r--r--. 2 boincer umatlas 410857691 Nov 25 00:13 ATLAS.root_0
[2025-11-25 17:11:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:13 start_atlas.sh
[2025-11-25 17:11:57] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:13 input.tar.gz
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas 910681326 Nov 25 16:20 HITS.pool.root.1
[2025-11-25 17:11:57] -rw-------. 1 boincer umatlas  10055680 Nov 25 16:24 result.tar.gz
17:11:59 (836373): run_atlas exited; CPU time 241469.180454
17:11:59 (836373): called boinc_finish(0)

</stderr_txt>
]]>

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