Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:04 (4064806): wrapper (7.7.26015): starting
00:10:04 (4064806): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:10:04] Arguments: --nthreads 8
[2025-11-25 00:10:04] Threads: 8
[2025-11-25 00:10:04] Checking for CVMFS
[2025-11-25 00:10:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:10:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:10:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:10:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:10:05] 2.13.3.0 10954 28170 380644 153270 2 178 31949268 32935936 27125 16776704 26 124215853 99.462 184149323 39944 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:10:05] CVMFS is ok
[2025-11-25 00:10:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:10:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:10:05] Further information can be found at the LHC@home message board.
[2025-11-25 00:10:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:10:05] Checking for apptainer binary...
[2025-11-25 00:10:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:10:05] Running /usr/bin/apptainer --version
[2025-11-25 00:10:06] apptainer version 1.4.4-1.el9
[2025-11-25 00:10:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:10:06] c7-11-13.aglt2.org
[2025-11-25 00:10:06] apptainer works
[2025-11-25 00:10:06] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:10:06] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:10:06] Starting ATLAS job with PandaID=6895386970
[2025-11-25 00:10:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:41:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:41:09] 2025-11-25 17:40:33,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,117 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 12:41:09] 2025-11-25 17:40:34,127 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.7603125
[2025-11-25 12:41:09] 2025-11-25 17:40:34,145 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895386970/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,145 | INFO     | extracted standard info from prmon json
[2025-11-25 12:41:09] 2025-11-25 17:40:34,145 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:41:09] 2025-11-25 17:40:34,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:41:09] 2025-11-25 17:40:34,155 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:41:09] 2025-11-25 17:40:34,157 | INFO     | sum of square deviations: 124086824523.44637
[2025-11-25 12:41:09] 2025-11-25 17:40:34,175 | INFO     | sum of deviations: 1170855671314.6165
[2025-11-25 12:41:09] 2025-11-25 17:40:34,175 | INFO     | mean x: 1764069928.4192674
[2025-11-25 12:41:09] 2025-11-25 17:40:34,175 | INFO     | mean y: 2893389.0691994573
[2025-11-25 12:41:09] 2025-11-25 17:40:34,175 | INFO     | intersect: -16642478012.912285
[2025-11-25 12:41:09] 2025-11-25 17:40:34,176 | INFO     | chi2: 5.257081186933297
[2025-11-25 12:41:09] 2025-11-25 17:40:34,177 | INFO     | sum of square deviations: 121578280899.59029
[2025-11-25 12:41:09] 2025-11-25 17:40:34,188 | INFO     | sum of deviations: 1396985020900.261
[2025-11-25 12:41:09] 2025-11-25 17:40:34,188 | INFO     | mean x: 1764069775.942623
[2025-11-25 12:41:09] 2025-11-25 17:40:34,188 | INFO     | mean y: 2907127.363387978
[2025-11-25 12:41:09] 2025-11-25 17:40:34,188 | INFO     | intersect: -20266988404.800106
[2025-11-25 12:41:09] 2025-11-25 17:40:34,189 | INFO     | chi2: 2.4622352636037297
[2025-11-25 12:41:09] 2025-11-25 17:40:34,189 | INFO     | current chi2=2.4622352636037297 (change=53.163453710326515 %)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,190 | INFO     | sum of square deviations: 119103562042.55292
[2025-11-25 12:41:09] 2025-11-25 17:40:34,202 | INFO     | sum of deviations: 1436622873443.6833
[2025-11-25 12:41:09] 2025-11-25 17:40:34,202 | INFO     | mean x: 1764069623.4594223
[2025-11-25 12:41:09] 2025-11-25 17:40:34,202 | INFO     | mean y: 2909560.3452544706
[2025-11-25 12:41:09] 2025-11-25 17:40:34,202 | INFO     | intersect: -21275234669.3256
[2025-11-25 12:41:09] 2025-11-25 17:40:34,203 | INFO     | chi2: 2.2104589291140564
[2025-11-25 12:41:09] 2025-11-25 17:40:34,203 | INFO     | current chi2=2.2104589291140564 (change=10.225518991275157 %)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,203 | INFO     | right removable region: 726
[2025-11-25 12:41:09] 2025-11-25 17:40:34,204 | INFO     | sum of square deviations: 121576788540.47403
[2025-11-25 12:41:09] 2025-11-25 17:40:34,216 | INFO     | sum of deviations: 986759128010.7317
[2025-11-25 12:41:09] 2025-11-25 17:40:34,216 | INFO     | mean x: 1764070080.9412568
[2025-11-25 12:41:09] 2025-11-25 17:40:34,216 | INFO     | mean y: 2904552.575136612
[2025-11-25 12:41:09] 2025-11-25 17:40:34,216 | INFO     | intersect: -14314896367.457525
[2025-11-25 12:41:09] 2025-11-25 17:40:34,217 | INFO     | chi2: 3.2862565355193776
[2025-11-25 12:41:09] 2025-11-25 17:40:34,217 | INFO     | current chi2=3.2862565355193776 (change=37.48895216441567 %)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,218 | INFO     | sum of square deviations: 119100889022.63237
[2025-11-25 12:41:09] 2025-11-25 17:40:34,231 | INFO     | sum of deviations: 923831924158.235
[2025-11-25 12:41:09] 2025-11-25 17:40:34,232 | INFO     | mean x: 1764070233.4607978
[2025-11-25 12:41:09] 2025-11-25 17:40:34,232 | INFO     | mean y: 2908428.0082530947
[2025-11-25 12:41:09] 2025-11-25 17:40:34,232 | INFO     | intersect: -13680485638.165913
[2025-11-25 12:41:09] 2025-11-25 17:40:34,233 | INFO     | chi2: 3.195848232810368
[2025-11-25 12:41:09] 2025-11-25 17:40:34,233 | INFO     | current chi2=3.195848232810368 (change=2.751103017425292 %)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,233 | INFO     | left removable region: 20
[2025-11-25 12:41:09] 2025-11-25 17:40:34,234 | INFO     | sum of square deviations: 109073401172.82852
[2025-11-25 12:41:09] 2025-11-25 17:40:34,244 | INFO     | sum of deviations: 1095350369862.419
[2025-11-25 12:41:09] 2025-11-25 17:40:34,244 | INFO     | mean x: 1764070202.9844193
[2025-11-25 12:41:09] 2025-11-25 17:40:34,244 | INFO     | mean y: 2930526.0382436262
[2025-11-25 12:41:09] 2025-11-25 17:40:34,244 | INFO     | intersect: -17712432967.94996
[2025-11-25 12:41:09] 2025-11-25 17:40:34,245 | INFO     | chi2: 0.08100863722543916
[2025-11-25 12:41:09] 2025-11-25 17:40:34,245 | INFO     | current memory leak: 10.04 B/s (using 706 data points, chi2=0.08)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,246 | INFO     | could have reported an average CPU frequency of 3280 MHz (28 samples)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,246 | INFO     | ..............................
[2025-11-25 12:41:09] 2025-11-25 17:40:34,246 | INFO     | . Timing measurements:
[2025-11-25 12:41:09] 2025-11-25 17:40:34,246 | INFO     | . get job = 0 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,247 | INFO     | . initial setup = 3 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,247 | INFO     | . payload setup = 10 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,247 | INFO     | . stage-in = 0 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,247 | INFO     | . payload execution = 44941 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,247 | INFO     | . stage-out = 3 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,247 | INFO     | . log creation = 0 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,247 | INFO     | ..............................
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | 
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | job summary report
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | --------------------------------------------------
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | PanDA job id: 6895386970
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | task id: 47556149
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | errors: (none)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:41:09] 2025-11-25 17:40:34,358 | INFO     | pilot state: finished 
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | transexitcode: 0
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | exeerrorcode: 0
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | exeerrordiag: 
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | exitcode: 0
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | exitmsg: OK
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | cpuconsumptiontime: 200148 s
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | nevents: 1000
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | neventsw: 0
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | pid: 4111041
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | pgrp: 4111041
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | corecount: 8
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | event service: False
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | sizes: {0: 2284304, 11: 2284594, 22: 2284594, 44955: 2330775, 44956: 2330774, 44960: 2339829, 44962: 2340013, 44974: 2340259}
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | --------------------------------------------------
[2025-11-25 12:41:09] 2025-11-25 17:40:34,359 | INFO     | 
[2025-11-25 12:41:09] 2025-11-25 17:40:34,360 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 12:41:09] 2025-11-25 17:40:34,385 | INFO     | time since job start (45004s) is within the limit (172800.0s)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | job 6895386970 has completed (purged errors)
[2025-11-25 12:41:09] 2025-11-25 17:40:34,394 | INFO     | overall cleanup function is called
[2025-11-25 12:41:09] 2025-11-25 17:40:35,381 [wrapper] supervise_pilot (15 min periods counter: 51)
[2025-11-25 12:41:09] 2025-11-25 17:40:35,430 | INFO     | --- collectZombieJob: --- 10, [4111041]
[2025-11-25 12:41:09] 2025-11-25 17:40:35,430 | INFO     | zombie collector waiting for pid 4111041
[2025-11-25 12:41:09] 2025-11-25 17:40:35,430 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:41:09] 2025-11-25 17:40:35,430 | INFO     | collected zombie processes
[2025-11-25 12:41:09] 2025-11-25 17:40:35,430 | INFO     | will attempt to kill all subprocesses of pid=4111041
[2025-11-25 12:41:09] 2025-11-25 17:40:36,252 | INFO     | process IDs to be killed: [4111041] (in reverse order)
[2025-11-25 12:41:09] 2025-11-25 17:40:36,408 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:41:09] 2025-11-25 17:40:36,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:41:09] 2025-11-25 17:40:36,436 | INFO     | did not find any defunct processes belonging to 4111041
[2025-11-25 12:41:09] 2025-11-25 17:40:36,454 | INFO     | did not find any defunct processes belonging to 4111041
[2025-11-25 12:41:09] 2025-11-25 17:40:36,456 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:41:09] 2025-11-25 17:40:36,456 | INFO     | ready for new job
[2025-11-25 12:41:09] 2025-11-25 17:40:36,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:41:09] 2025-11-25 17:40:36,466 | INFO     | ***************************************
[2025-11-25 12:41:09] 2025-11-25 17:40:36,466 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:41:09] 2025-11-25 17:40:36,466 | INFO     | ***************************************
[2025-11-25 12:41:09] 2025-11-25 17:40:36,466 | INFO     | 
[2025-11-25 12:41:09] 2025-11-25 17:40:36,474 | INFO     | architecture information:
[2025-11-25 12:41:09] 2025-11-25 17:40:36,478 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:41:09] 2025-11-25 17:40:36,519 | INFO     | cat /etc/os-release:
[2025-11-25 12:41:09] NAME="CentOS Linux"
[2025-11-25 12:41:09] VERSION="7 (Core)"
[2025-11-25 12:41:09] ID="centos"
[2025-11-25 12:41:09] ID_LIKE="rhel fedora"
[2025-11-25 12:41:09] VERSION_ID="7"
[2025-11-25 12:41:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:41:09] ANSI_COLOR="0;31"
[2025-11-25 12:41:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:41:09] HOME_URL="https://www.centos.org/"
[2025-11-25 12:41:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:41:09] 
[2025-11-25 12:41:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:41:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:41:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:41:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:41:09] 
[2025-11-25 12:41:09] 2025-11-25 17:40:36,519 | INFO     | ***************************************
[2025-11-25 12:41:09] 2025-11-25 17:40:37,022 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 12:41:09] 2025-11-25 17:40:37,048 | INFO     | sufficient remaining disk space (90424999936 B)
[2025-11-25 12:41:09] 2025-11-25 17:40:37,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:41:09] 2025-11-25 17:40:37,048 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:41:09] 2025-11-25 17:40:37,048 | INFO     | update_server=False
[2025-11-25 12:41:09] 2025-11-25 17:40:37,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:41:09] 2025-11-25 17:40:37,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:41:09] 2025-11-25 17:40:37,066 | INFO     | all payload control threads have been joined
[2025-11-25 12:41:09] 2025-11-25 17:40:37,441 | INFO     | all data control threads have been joined
[2025-11-25 12:41:09] 2025-11-25 17:40:37,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:09] 2025-11-25 17:40:37,511 | INFO     | aborting loop
[2025-11-25 12:41:09] 2025-11-25 17:40:37,595 | INFO     | all job control threads have been joined
[2025-11-25 12:41:09] 2025-11-25 17:40:38,054 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,072 | INFO     | [payload] control thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,328 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,350 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:41:09] 2025-11-25 17:40:38,447 | INFO     | [data] control thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,473 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,516 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,602 | INFO     | [job] control thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,711 | INFO     | [job] validate thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:38,863 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:39,126 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:39,248 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:39,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:09] 2025-11-25 17:40:39,413 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:40,386 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:40,431 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:41,060 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:41:09] 2025-11-25 17:40:48,526 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:41:09] 2025-11-25 17:40:48,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694681663296)>', '<ExcThread(monitor, started 139694205560576)>']
[2025-11-25 12:41:09] 2025-11-25 17:40:53,563 | INFO     | all workflow threads have been joined
[2025-11-25 12:41:09] 2025-11-25 17:40:53,565 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:41:09] 2025-11-25 17:40:53,565 | INFO     | traces error code: 0
[2025-11-25 12:41:09] 2025-11-25 17:40:53,565 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:41:09] 2025-11-25 17:41:09,039 | INFO     | PID=4076816 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:41:09] 2025-11-25 17:41:09,040 | INFO     | .. there are 34 such processes running
[2025-11-25 12:41:09] 2025-11-25 17:41:09,040 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:41:09] 2025-11-25 17:41:09,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:41:09] 2025-11-25 17:41:09,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:41:09] 2025-11-25 17:41:09,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:41:09] 2025-11-25 17:41:09,040 | INFO     | [monitor] control thread has ended
[2025-11-25 12:41:09] 2025-11-25 17:41:09,241 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:41:09] 2025-11-25 17:41:09,247 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:41:09] 2025-11-25 17:41:09,249 [wrapper] pilotpid: 4076816
[2025-11-25 12:41:09] 2025-11-25 17:41:09,253 [wrapper] Pilot exit status: 0
[2025-11-25 12:41:09] 2025-11-25 17:41:09,280 [wrapper] pandaids: 6895386970
[2025-11-25 12:41:09] 2025-11-25 17:41:09,380 [wrapper] cleanup supervisor_pilot 2910499 4076817
[2025-11-25 12:41:09] 2025-11-25 17:41:09,384 [wrapper] Test setup, not cleaning
[2025-11-25 12:41:09] 2025-11-25 17:41:09,387 [wrapper] apfmon messages muted
[2025-11-25 12:41:09] 2025-11-25 17:41:09,391 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:41:09] 2025-11-25 17:41:09,395 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:41:09]  *** Error codes and diagnostics ***
[2025-11-25 12:41:09]     "exeErrorCode": 0,
[2025-11-25 12:41:09]     "exeErrorDiag": "",
[2025-11-25 12:41:09]     "pilotErrorCode": 0,
[2025-11-25 12:41:09]     "pilotErrorDiag": "",
[2025-11-25 12:41:09]  *** Listing of results directory ***
[2025-11-25 12:41:09] total 1314448
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-25 12:41:09] -rwx------. 1 boincer umatlas     36292 Nov 24 01:17 runpilot2-wrapper.sh
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:17 queuedata.json
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:41:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:10 run_atlas
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:10 job.xml
[2025-11-25 12:41:09] -rw-r--r--. 2 boincer umatlas 408206275 Nov 25 00:10 EVNT.47483658._001256.pool.root.1
[2025-11-25 12:41:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-25 12:41:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:10 shared
[2025-11-25 12:41:09] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:10 input.tar.gz
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:10 boinc_lockfile
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 00:10 pandaJob.out
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas        57 Nov 25 00:10 setup.sh.local
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas    991801 Nov 25 00:10 agis_schedconf.cvmfs.json
[2025-11-25 12:41:09] drwx------. 5 boincer umatlas      4096 Nov 25 00:10 pilot3
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas       533 Nov 25 12:30 boinc_task_state.xml
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas      6905 Nov 25 12:37 init_data.xml
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas 917998570 Nov 25 12:39 HITS.47556149._002421.pool.root.1
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas      1049 Nov 25 12:40 memory_monitor_summary.json
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas   1962728 Nov 25 12:40 log.47556149._002421.job.log.tgz.1
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas        95 Nov 25 12:40 pilot_heartbeat.json
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas      8582 Nov 25 12:40 heartbeat.json
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:41 boinc_mmap_file
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:41 wrapper_checkpoint.txt
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas       823 Nov 25 12:41 pilotlog.txt
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas   5971331 Nov 25 12:41 log.47556149._002421.job.log.1
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas       353 Nov 25 12:41 output.list
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:41 runtime_log
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas   7956480 Nov 25 12:41 result.tar.gz
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 12:41 runtime_log.err
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas       660 Nov 25 12:41 QetKDmy3eh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPVLKDmn3eSTn.diag
[2025-11-25 12:41:09] -rw-r--r--. 1 boincer umatlas     21334 Nov 25 12:41 stderr.txt
[2025-11-25 12:41:09] HITS file was successfully produced:
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas 917998570 Nov 25 12:39 shared/HITS.pool.root.1
[2025-11-25 12:41:09]  *** Contents of shared directory: ***
[2025-11-25 12:41:09] total 1303500
[2025-11-25 12:41:09] -rw-r--r--. 2 boincer umatlas 408206275 Nov 25 00:10 ATLAS.root_0
[2025-11-25 12:41:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-25 12:41:09] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:10 input.tar.gz
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas 917998570 Nov 25 12:39 HITS.pool.root.1
[2025-11-25 12:41:09] -rw-------. 1 boincer umatlas   7956480 Nov 25 12:41 result.tar.gz
12:41:11 (4064806): run_atlas exited; CPU time 200698.790716
12:41:11 (4064806): called boinc_finish(0)

</stderr_txt>
]]>

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