Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:15 (229342): wrapper (7.7.26015): starting
00:10:15 (229342): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:10:15] Arguments: --nthreads 9
[2025-11-25 00:10:15] Threads: 9
[2025-11-25 00:10:15] Checking for CVMFS
[2025-11-25 00:10:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:10:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:10:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:10:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:10:17] 2.13.2.0 9514 33850 480368 153270 1 623 38558538 40960001 27156 16776704 0 89325484 99.573 95028925 35939 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:10:17] CVMFS is ok
[2025-11-25 00:10:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:10:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:10:17] Further information can be found at the LHC@home message board.
[2025-11-25 00:10:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:10:17] Checking for apptainer binary...
[2025-11-25 00:10:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:10:17] Running /usr/bin/apptainer --version
[2025-11-25 00:10:17] apptainer version 1.4.4-1.el9
[2025-11-25 00:10:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:10:17] c-211-33-3.aglt2.org
[2025-11-25 00:10:17] apptainer works
[2025-11-25 00:10:17] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:10:17] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:10:17] Starting ATLAS job with PandaID=6895386749
[2025-11-25 00:10:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:07:49]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:07:49] 2025-11-27 02:06:43,411 | INFO     | executing command: lscpu
[2025-11-26 21:07:49] 2025-11-27 02:06:43,491 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 21:07:49] 2025-11-27 02:06:44,224 | INFO     | monitor loop #9295: job 0:6895386749 is in state 'finished'
[2025-11-26 21:07:49] 2025-11-27 02:06:44,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:07:49] 2025-11-27 02:06:44,727 | INFO     | time since job start (161754s) is within the limit (172800.0s)
[2025-11-26 21:07:49] 2025-11-27 02:06:46,729 | INFO     | monitor loop #9296: job 0:6895386749 is in state 'finished'
[2025-11-26 21:07:49] 2025-11-27 02:06:46,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:07:49] 2025-11-27 02:06:46,732 | INFO     | time since job start (161756s) is within the limit (172800.0s)
[2025-11-26 21:07:49] 2025-11-27 02:06:48,739 | INFO     | time since job start (161758s) is within the limit (172800.0s)
[2025-11-26 21:07:49] 2025-11-27 02:06:49,234 | INFO     | monitor loop #9297: job 0:6895386749 is in state 'finished'
[2025-11-26 21:07:49] 2025-11-27 02:06:49,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:07:49] 2025-11-27 02:06:50,283 | INFO     | PID=233561 has CPU usage=16.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:07:49] 2025-11-27 02:06:50,283 | INFO     | .. there are 24 such processes running
[2025-11-26 21:07:49] 2025-11-27 02:06:51,284 | INFO     | time since job start (161761s) is within the limit (172800.0s)
[2025-11-26 21:07:49] 2025-11-27 02:06:51,751 | INFO     | monitor loop #9298: job 0:6895386749 is in state 'finished'
[2025-11-26 21:07:49] 2025-11-27 02:06:51,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:07:49] 2025-11-27 02:06:52,606 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 21:07:49] 2025-11-27 02:06:52,620 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2767.740125
[2025-11-26 21:07:49] 2025-11-27 02:06:52,638 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895386749/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:07:49] 2025-11-27 02:06:52,638 | INFO     | extracted standard info from prmon json
[2025-11-26 21:07:49] 2025-11-27 02:06:52,639 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:07:49] 2025-11-27 02:06:52,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:07:49] 2025-11-27 02:06:52,682 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:07:49] 2025-11-27 02:06:52,688 | INFO     | sum of square deviations: 5770218493014.667
[2025-11-26 21:07:49] 2025-11-27 02:06:52,850 | INFO     | sum of deviations: 24895667787931.66
[2025-11-26 21:07:49] 2025-11-27 02:06:52,850 | INFO     | mean x: 1764128386.9645283
[2025-11-26 21:07:49] 2025-11-27 02:06:52,850 | INFO     | mean y: 3055662.2626415095
[2025-11-26 21:07:49] 2025-11-27 02:06:52,850 | INFO     | intersect: -7608294637.608406
[2025-11-26 21:07:49] 2025-11-27 02:06:52,853 | INFO     | chi2: 19.581369694886988
[2025-11-26 21:07:49] 2025-11-27 02:06:52,857 | INFO     | sum of square deviations: 5737619481887.038
[2025-11-26 21:07:49] 2025-11-27 02:06:52,998 | INFO     | sum of deviations: 25894079222062.152
[2025-11-26 21:07:49] 2025-11-27 02:06:52,998 | INFO     | mean x: 1764128234.4710774
[2025-11-26 21:07:49] 2025-11-27 02:06:52,998 | INFO     | mean y: 3060332.5962192817
[2025-11-26 21:07:49] 2025-11-27 02:06:52,998 | INFO     | intersect: -7958512651.718683
[2025-11-26 21:07:49] 2025-11-27 02:06:53,001 | INFO     | chi2: 16.143549282553987
[2025-11-26 21:07:49] 2025-11-27 02:06:53,001 | INFO     | current chi2=16.143549282553987 (change=17.556588052319295 %)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,002 | INFO     | right removable region: 2644
[2025-11-26 21:07:49] 2025-11-27 02:06:53,005 | INFO     | sum of square deviations: 5737613881477.045
[2025-11-26 21:07:49] 2025-11-27 02:06:53,146 | INFO     | sum of deviations: 23724912732051.094
[2025-11-26 21:07:49] 2025-11-27 02:06:53,146 | INFO     | mean x: 1764128539.4710774
[2025-11-26 21:07:49] 2025-11-27 02:06:53,147 | INFO     | mean y: 3061138.1644612476
[2025-11-26 21:07:49] 2025-11-27 02:06:53,147 | INFO     | intersect: -7291573271.130708
[2025-11-26 21:07:49] 2025-11-27 02:06:53,150 | INFO     | chi2: 15.045096355433456
[2025-11-26 21:07:49] 2025-11-27 02:06:53,150 | INFO     | current chi2=15.045096355433456 (change=23.166271870338193 %)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,150 | INFO     | left removable region: 10
[2025-11-26 21:07:49] 2025-11-27 02:06:53,153 | INFO     | sum of square deviations: 5666323340224.417
[2025-11-26 21:07:49] 2025-11-27 02:06:53,294 | INFO     | sum of deviations: 23912875418132.4
[2025-11-26 21:07:49] 2025-11-27 02:06:53,294 | INFO     | mean x: 1764128508.9851937
[2025-11-26 21:07:49] 2025-11-27 02:06:53,294 | INFO     | mean y: 3071468.908883827
[2025-11-26 21:07:49] 2025-11-27 02:06:53,295 | INFO     | intersect: -7441859348.482102
[2025-11-26 21:07:49] 2025-11-27 02:06:53,298 | INFO     | chi2: 7.747822183970743
[2025-11-26 21:07:49] 2025-11-27 02:06:53,298 | INFO     | current memory leak: 4.22 B/s (using 2634 data points, chi2=7.75)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,300 | INFO     | could have reported an average CPU frequency of 2656 MHz (91 samples)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,300 | INFO     | ..............................
[2025-11-26 21:07:49] 2025-11-27 02:06:53,300 | INFO     | . Timing measurements:
[2025-11-26 21:07:49] 2025-11-27 02:06:53,300 | INFO     | . get job = 0 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,300 | INFO     | . initial setup = 3 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,300 | INFO     | . payload setup = 47 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,300 | INFO     | . stage-in = 0 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,301 | INFO     | . payload execution = 161630 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,301 | INFO     | . stage-out = 5 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,301 | INFO     | . log creation = 1 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,301 | INFO     | ..............................
[2025-11-26 21:07:49] 2025-11-27 02:06:53,307 | INFO     | time since job start (161763s) is within the limit (172800.0s)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,396 | INFO     | 
[2025-11-26 21:07:49] 2025-11-27 02:06:53,396 | INFO     | job summary report
[2025-11-26 21:07:49] 2025-11-27 02:06:53,396 | INFO     | --------------------------------------------------
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | PanDA job id: 6895386749
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | task id: 47556149
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | errors: (none)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | pilot state: finished 
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | transexitcode: 0
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | exeerrorcode: 0
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | exeerrordiag: 
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | exitcode: 0
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | exitmsg: OK
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | cpuconsumptiontime: 266972 s
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | nevents: 1000
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | neventsw: 0
[2025-11-26 21:07:49] 2025-11-27 02:06:53,397 | INFO     | pid: 242462
[2025-11-26 21:07:49] 2025-11-27 02:06:53,398 | INFO     | pgrp: 242462
[2025-11-26 21:07:49] 2025-11-27 02:06:53,398 | INFO     | corecount: 9
[2025-11-26 21:07:49] 2025-11-27 02:06:53,398 | INFO     | event service: False
[2025-11-26 21:07:49] 2025-11-27 02:06:53,398 | INFO     | sizes: {0: 2283481, 1: 2284337, 2: 2284337, 13: 2284365, 24: 2284421, 25: 2284711, 34: 2284867, 161682: 2382811, 161683: 2382810, 161689: 2391921, 161699: 2392111}
[2025-11-26 21:07:49] 2025-11-27 02:06:53,398 | INFO     | --------------------------------------------------
[2025-11-26 21:07:49] 2025-11-27 02:06:53,398 | INFO     | 
[2025-11-26 21:07:49] 2025-11-27 02:06:53,398 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:07:49] 2025-11-27 02:06:53,426 | INFO     | job 6895386749 has completed (purged errors)
[2025-11-26 21:07:49] 2025-11-27 02:06:53,426 | INFO     | overall cleanup function is called
[2025-11-26 21:07:49] 2025-11-27 02:06:54,444 | INFO     | --- collectZombieJob: --- 10, [242462]
[2025-11-26 21:07:49] 2025-11-27 02:06:54,445 | INFO     | zombie collector waiting for pid 242462
[2025-11-26 21:07:49] 2025-11-27 02:06:54,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:07:49] 2025-11-27 02:06:54,445 | INFO     | collected zombie processes
[2025-11-26 21:07:49] 2025-11-27 02:06:54,445 | INFO     | will attempt to kill all subprocesses of pid=242462
[2025-11-26 21:07:49] 2025-11-27 02:06:54,873 | INFO     | process IDs to be killed: [242462] (in reverse order)
[2025-11-26 21:07:49] 2025-11-27 02:06:55,033 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:07:49] 2025-11-27 02:06:55,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:07:49] 2025-11-27 02:06:55,048 | INFO     | did not find any defunct processes belonging to 242462
[2025-11-26 21:07:49] 2025-11-27 02:06:55,063 | INFO     | did not find any defunct processes belonging to 242462
[2025-11-26 21:07:49] 2025-11-27 02:06:55,064 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:07:49] 2025-11-27 02:06:55,064 | INFO     | ready for new job
[2025-11-26 21:07:49] 2025-11-27 02:06:55,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:07:49] 2025-11-27 02:06:55,075 | INFO     | ***************************************
[2025-11-26 21:07:49] 2025-11-27 02:06:55,075 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:07:49] 2025-11-27 02:06:55,075 | INFO     | ***************************************
[2025-11-26 21:07:49] 2025-11-27 02:06:55,075 | INFO     | 
[2025-11-26 21:07:49] 2025-11-27 02:06:55,081 | INFO     | architecture information:
[2025-11-26 21:07:49] 2025-11-27 02:06:55,081 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:07:49] 2025-11-27 02:06:55,103 | INFO     | cat /etc/os-release:
[2025-11-26 21:07:49] NAME="CentOS Linux"
[2025-11-26 21:07:49] VERSION="7 (Core)"
[2025-11-26 21:07:49] ID="centos"
[2025-11-26 21:07:49] ID_LIKE="rhel fedora"
[2025-11-26 21:07:49] VERSION_ID="7"
[2025-11-26 21:07:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:07:49] ANSI_COLOR="0;31"
[2025-11-26 21:07:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:07:49] HOME_URL="https://www.centos.org/"
[2025-11-26 21:07:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:07:49] 
[2025-11-26 21:07:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:07:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:07:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:07:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:07:49] 
[2025-11-26 21:07:49] 2025-11-27 02:06:55,104 | INFO     | ***************************************
[2025-11-26 21:07:49] 2025-11-27 02:06:55,607 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 21:07:49] 2025-11-27 02:06:55,627 | INFO     | sufficient remaining disk space (122764132352 B)
[2025-11-26 21:07:49] 2025-11-27 02:06:55,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:07:49] 2025-11-27 02:06:55,628 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:07:49] 2025-11-27 02:06:55,628 | INFO     | update_server=False
[2025-11-26 21:07:49] 2025-11-27 02:06:55,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:07:49] 2025-11-27 02:06:55,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:07:49] 2025-11-27 02:06:55,628 | INFO     | aborting loop
[2025-11-26 21:07:49] 2025-11-27 02:06:55,741 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:07:49] 2025-11-27 02:06:55,994 | INFO     | all payload control threads have been joined
[2025-11-26 21:07:49] 2025-11-27 02:06:56,128 | INFO     | all data control threads have been joined
[2025-11-26 21:07:49] 2025-11-27 02:06:56,225 | INFO     | all job control threads have been joined
[2025-11-26 21:07:49] 2025-11-27 02:06:56,634 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:56,634 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:56,863 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:56,868 | INFO     | [job] validate thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:56,933 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:56,945 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:56,985 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,000 | INFO     | [payload] control thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,107 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,134 | INFO     | [data] control thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,224 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,231 | INFO     | [job] control thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,748 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,760 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:06:57,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:07:49] 2025-11-27 02:06:58,409 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:07:49] 2025-11-27 02:06:59,414 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:07:02,011 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:07:49] 2025-11-27 02:07:26,923 | INFO     | PID=233561 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 21:07:49] 2025-11-27 02:07:26,923 | INFO     | .. there are 24 such processes running
[2025-11-26 21:07:49] 2025-11-27 02:07:26,924 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:07:49] 2025-11-27 02:07:26,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:07:49] 2025-11-27 02:07:26,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:07:49] 2025-11-27 02:07:41,477 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:07:49] 2025-11-27 02:07:43,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936421873472)>', '<ExcThread(monitor, started 139935789078272)>']
[2025-11-26 21:07:49] 2025-11-27 02:07:44,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:07:49] 2025-11-27 02:07:44,021 | INFO     | [monitor] control thread has ended
[2025-11-26 21:07:49] 2025-11-27 02:07:48,490 | INFO     | all workflow threads have been joined
[2025-11-26 21:07:49] 2025-11-27 02:07:48,493 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:07:49] 2025-11-27 02:07:48,493 | INFO     | traces error code: 0
[2025-11-26 21:07:49] 2025-11-27 02:07:48,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:07:49] 2025-11-27 02:07:48,643 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:07:49] 2025-11-27 02:07:48,647 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:07:49] 2025-11-27 02:07:48,650 [wrapper] pilotpid: 233561
[2025-11-26 21:07:49] 2025-11-27 02:07:48,652 [wrapper] Pilot exit status: 0
[2025-11-26 21:07:49] 2025-11-27 02:07:48,662 [wrapper] pandaids: 6895386749
[2025-11-26 21:07:49] 2025-11-27 02:07:48,741 [wrapper] cleanup supervisor_pilot 4056708 233562
[2025-11-26 21:07:49] 2025-11-27 02:07:48,749 [wrapper] Test setup, not cleaning
[2025-11-26 21:07:49] 2025-11-27 02:07:48,763 [wrapper] apfmon messages muted
[2025-11-26 21:07:49] 2025-11-27 02:07:48,779 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:07:49] 2025-11-27 02:07:48,796 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:07:49]  *** Error codes and diagnostics ***
[2025-11-26 21:07:49]     "exeErrorCode": 0,
[2025-11-26 21:07:49]     "exeErrorDiag": "",
[2025-11-26 21:07:49]     "pilotErrorCode": 0,
[2025-11-26 21:07:49]     "pilotErrorDiag": "",
[2025-11-26 21:07:49]  *** Listing of results directory ***
[2025-11-26 21:07:49] total 1352000
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:01 queuedata.json
[2025-11-26 21:07:49] -rwx------. 1 boincer umatlas     36292 Nov 24 01:03 runpilot2-wrapper.sh
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:07:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:10 run_atlas
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:10 job.xml
[2025-11-26 21:07:49] -rw-r--r--. 2 boincer umatlas 409422272 Nov 25 00:10 EVNT.47483658._001254.pool.root.1
[2025-11-26 21:07:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-26 21:07:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:10 shared
[2025-11-26 21:07:49] -rw-r--r--. 2 boincer umatlas    611288 Nov 25 00:10 input.tar.gz
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:10 boinc_lockfile
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:10 pandaJob.out
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas        57 Nov 25 00:10 setup.sh.local
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas    991801 Nov 25 00:10 agis_schedconf.cvmfs.json
[2025-11-26 21:07:49] drwx------. 7 boincer umatlas      4096 Nov 25 00:10 pilot3
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:52 boinc_task_state.xml
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 21:03 init_data.xml
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas 924131989 Nov 26 21:05 HITS.47556149._002409.pool.root.1
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas      1074 Nov 26 21:06 memory_monitor_summary.json
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas   3450648 Nov 26 21:06 log.47556149._002409.job.log.tgz.1
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas      8654 Nov 26 21:06 heartbeat.json
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas        95 Nov 26 21:07 pilot_heartbeat.json
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:07 boinc_mmap_file
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:07 wrapper_checkpoint.txt
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas      4824 Nov 26 21:07 pilotlog.txt
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas  20010261 Nov 26 21:07 log.47556149._002409.job.log.1
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas       353 Nov 26 21:07 output.list
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:07 runtime_log
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas  23480320 Nov 26 21:07 result.tar.gz
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 21:07 runtime_log.err
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas       672 Nov 26 21:07 eOLODm3qeh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9ULKDmHDP2Jm.diag
[2025-11-26 21:07:49] -rw-r--r--. 1 boincer umatlas     21935 Nov 26 21:07 stderr.txt
[2025-11-26 21:07:49] HITS file was successfully produced:
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas 924131989 Nov 26 21:05 shared/HITS.pool.root.1
[2025-11-26 21:07:49]  *** Contents of shared directory: ***
[2025-11-26 21:07:49] total 1325860
[2025-11-26 21:07:49] -rw-r--r--. 2 boincer umatlas 409422272 Nov 25 00:10 ATLAS.root_0
[2025-11-26 21:07:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-26 21:07:49] -rw-r--r--. 2 boincer umatlas    611288 Nov 25 00:10 input.tar.gz
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas 924131989 Nov 26 21:05 HITS.pool.root.1
[2025-11-26 21:07:49] -rw-------. 1 boincer umatlas  23480320 Nov 26 21:07 result.tar.gz
21:07:50 (229342): run_atlas exited; CPU time 272033.827849
21:07:50 (229342): called boinc_finish(0)

</stderr_txt>
]]>

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