Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:18:51 (1070300): wrapper (7.7.26015): starting
14:18:51 (1070300): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 14:18:51] Arguments: --nthreads 8
[2025-11-25 14:18:51] Threads: 8
[2025-11-25 14:18:51] Checking for CVMFS
[2025-11-25 14:18:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:18:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:18:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:18:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:18:54] 2.13.3.0 11830 28886 355536 153295 1 104 31289967 32935936 40469 16776704 0 157071212 99.561 170464375 33148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 14:18:54] CVMFS is ok
[2025-11-25 14:18:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:18:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:18:54] Further information can be found at the LHC@home message board.
[2025-11-25 14:18:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:18:54] Checking for apptainer binary...
[2025-11-25 14:18:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:18:54] Running /usr/bin/apptainer --version
[2025-11-25 14:18:54] apptainer version 1.4.4-1.el9
[2025-11-25 14:18:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:18:55] c6-8-25-1.aglt2.org
[2025-11-25 14:18:55] apptainer works
[2025-11-25 14:18:55] Set ATHENA_PROC_NUMBER=8
[2025-11-25 14:18:55] Set ATHENA_CORE_NUMBER=8
[2025-11-25 14:18:55] Starting ATLAS job with PandaID=6895386738
[2025-11-25 14:18:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:41:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:41:53] 2025-11-26 22:40:54,419 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:41:53] 2025-11-26 22:40:55,886 | INFO     | time since job start (98476s) is within the limit (172800.0s)
[2025-11-26 17:41:53] 2025-11-26 22:40:56,923 | INFO     | monitor loop #5163: job 0:6895386738 is in state 'finished'
[2025-11-26 17:41:53] 2025-11-26 22:40:56,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:41:53] 2025-11-26 22:40:57,893 | INFO     | time since job start (98478s) is within the limit (172800.0s)
[2025-11-26 17:41:53] 2025-11-26 22:40:59,428 | INFO     | monitor loop #5164: job 0:6895386738 is in state 'finished'
[2025-11-26 17:41:53] 2025-11-26 22:40:59,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:41:53] 2025-11-26 22:40:59,899 | INFO     | time since job start (98480s) is within the limit (172800.0s)
[2025-11-26 17:41:53] 2025-11-26 22:41:01,906 | INFO     | time since job start (98482s) is within the limit (172800.0s)
[2025-11-26 17:41:53] 2025-11-26 22:41:01,935 | INFO     | monitor loop #5165: job 0:6895386738 is in state 'finished'
[2025-11-26 17:41:53] 2025-11-26 22:41:01,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:41:53] 2025-11-26 22:41:04,452 | INFO     | monitor loop #5166: job 0:6895386738 is in state 'finished'
[2025-11-26 17:41:53] 2025-11-26 22:41:04,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:41:53] 2025-11-26 22:41:05,424 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 17:41:53] 2025-11-26 22:41:05,497 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2572.9173020833337
[2025-11-26 17:41:53] 2025-11-26 22:41:06,000 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895386738/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:41:53] 2025-11-26 22:41:06,001 | INFO     | extracted standard info from prmon json
[2025-11-26 17:41:53] 2025-11-26 22:41:06,001 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:41:53] 2025-11-26 22:41:06,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:41:53] 2025-11-26 22:41:06,994 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:41:53] 2025-11-26 22:41:06,997 | INFO     | sum of square deviations: 1298912123126.6982
[2025-11-26 17:41:53] 2025-11-26 22:41:07,091 | INFO     | monitor loop #5167: job 0:6895386738 is in state 'finished'
[2025-11-26 17:41:53] 2025-11-26 22:41:07,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:41:53] 2025-11-26 22:41:07,669 | INFO     | sum of deviations: 4221082183206.6753
[2025-11-26 17:41:53] 2025-11-26 22:41:07,669 | INFO     | mean x: 1764147617.4863524
[2025-11-26 17:41:53] 2025-11-26 22:41:07,669 | INFO     | mean y: 2932658.098635236
[2025-11-26 17:41:53] 2025-11-26 22:41:07,669 | INFO     | intersect: -5730027981.9121065
[2025-11-26 17:41:53] 2025-11-26 22:41:07,672 | INFO     | chi2: 16.53779898758276
[2025-11-26 17:41:53] 2025-11-26 22:41:07,674 | INFO     | sum of square deviations: 1286864270821.939
[2025-11-26 17:41:53] 2025-11-26 22:41:07,951 | INFO     | sum of deviations: 4752892912454.614
[2025-11-26 17:41:53] 2025-11-26 22:41:07,976 | INFO     | mean x: 1764147464.9937773
[2025-11-26 17:41:53] 2025-11-26 22:41:07,976 | INFO     | mean y: 2939388.360920971
[2025-11-26 17:41:53] 2025-11-26 22:41:07,976 | INFO     | intersect: -6512746976.556338
[2025-11-26 17:41:53] 2025-11-26 22:41:07,978 | INFO     | chi2: 13.47918773423366
[2025-11-26 17:41:53] 2025-11-26 22:41:07,978 | INFO     | current chi2=13.47918773423366 (change=18.49466942756789 %)
[2025-11-26 17:41:53] 2025-11-26 22:41:07,978 | INFO     | right removable region: 1606
[2025-11-26 17:41:53] 2025-11-26 22:41:07,993 | INFO     | sum of square deviations: 1286861628896.9692
[2025-11-26 17:41:53] 2025-11-26 22:41:08,574 | INFO     | sum of deviations: 3644650721203.263
[2025-11-26 17:41:53] 2025-11-26 22:41:08,628 | INFO     | mean x: 1764147769.995644
[2025-11-26 17:41:53] 2025-11-26 22:41:08,629 | INFO     | mean y: 2939951.322962041
[2025-11-26 17:41:53] 2025-11-26 22:41:08,629 | INFO     | intersect: -4993481029.645255
[2025-11-26 17:41:53] 2025-11-26 22:41:08,631 | INFO     | chi2: 13.401304978749456
[2025-11-26 17:41:53] 2025-11-26 22:41:08,631 | INFO     | current chi2=13.401304978749456 (change=18.965607280559578 %)
[2025-11-26 17:41:53] 2025-11-26 22:41:08,632 | INFO     | left removable region: 10
[2025-11-26 17:41:53] 2025-11-26 22:41:08,659 | INFO     | sum of square deviations: 1260617037580.826
[2025-11-26 17:41:53] 2025-11-26 22:41:09,337 | INFO     | sum of deviations: 4084602381981.266
[2025-11-26 17:41:53] 2025-11-26 22:41:09,338 | INFO     | mean x: 1764147739.510025
[2025-11-26 17:41:53] 2025-11-26 22:41:09,338 | INFO     | mean y: 2950469.2023809524
[2025-11-26 17:41:53] 2025-11-26 22:41:09,338 | INFO     | intersect: -5713172543.697564
[2025-11-26 17:41:53] 2025-11-26 22:41:09,340 | INFO     | chi2: 9.45535407726416
[2025-11-26 17:41:53] 2025-11-26 22:41:09,379 | INFO     | current memory leak: 3.24 B/s (using 1596 data points, chi2=9.46)
[2025-11-26 17:41:53] 2025-11-26 22:41:09,389 | INFO     | could have reported an average CPU frequency of 2642 MHz (57 samples)
[2025-11-26 17:41:53] 2025-11-26 22:41:09,389 | INFO     | ..............................
[2025-11-26 17:41:53] 2025-11-26 22:41:09,389 | INFO     | . Timing measurements:
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | . get job = 0 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | . initial setup = 4 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | . payload setup = 31 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | . stage-in = 0 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | . payload execution = 98345 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | . stage-out = 19 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | . log creation = 9 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,390 | INFO     | ..............................
[2025-11-26 17:41:53] 2025-11-26 22:41:09,818 | INFO     | 
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | job summary report
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | --------------------------------------------------
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | PanDA job id: 6895386738
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | task id: 47556149
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | errors: (none)
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | pilot state: finished 
[2025-11-26 17:41:53] 2025-11-26 22:41:09,819 | INFO     | transexitcode: 0
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | exeerrorcode: 0
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | exeerrordiag: 
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | exitcode: 0
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | exitmsg: OK
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | cpuconsumptiontime: 258375 s
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | nevents: 1000
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | neventsw: 0
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | pid: 1085492
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | pgrp: 1085492
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | corecount: 8
[2025-11-26 17:41:53] 2025-11-26 22:41:09,820 | INFO     | event service: False
[2025-11-26 17:41:53] 2025-11-26 22:41:09,821 | INFO     | sizes: {0: 2284087, 1: 2284171, 2: 2284370, 3: 2284370, 14: 2284398, 23: 2284688, 24: 2284844, 98382: 2352667, 98403: 2361661, 98404: 2361717, 98444: 2361963}
[2025-11-26 17:41:53] 2025-11-26 22:41:09,821 | INFO     | --------------------------------------------------
[2025-11-26 17:41:53] 2025-11-26 22:41:09,821 | INFO     | 
[2025-11-26 17:41:53] 2025-11-26 22:41:09,821 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 17:41:53] 2025-11-26 22:41:09,925 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,925 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,927 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,927 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:41:53] 2025-11-26 22:41:09,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,927 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:41:53] 2025-11-26 22:41:09,928 | INFO     | job 6895386738 has completed (purged errors)
[2025-11-26 17:41:53] 2025-11-26 22:41:09,928 | INFO     | overall cleanup function is called
[2025-11-26 17:41:53] 2025-11-26 22:41:11,200 | INFO     | --- collectZombieJob: --- 10, [1085492]
[2025-11-26 17:41:53] 2025-11-26 22:41:11,201 | INFO     | zombie collector waiting for pid 1085492
[2025-11-26 17:41:53] 2025-11-26 22:41:11,201 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:41:53] 2025-11-26 22:41:11,201 | INFO     | collected zombie processes
[2025-11-26 17:41:53] 2025-11-26 22:41:11,201 | INFO     | will attempt to kill all subprocesses of pid=1085492
[2025-11-26 17:41:53] 2025-11-26 22:41:12,032 | INFO     | PID=1076006 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:41:53] 2025-11-26 22:41:12,034 | INFO     | .. there are 52 such processes running
[2025-11-26 17:41:53] 2025-11-26 22:41:17,073 | INFO     | process IDs to be killed: [1085492] (in reverse order)
[2025-11-26 17:41:53] 2025-11-26 22:41:17,606 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:41:53] 2025-11-26 22:41:17,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:41:53] 2025-11-26 22:41:17,707 | INFO     | did not find any defunct processes belonging to 1085492
[2025-11-26 17:41:53] 2025-11-26 22:41:18,043 | INFO     | did not find any defunct processes belonging to 1085492
[2025-11-26 17:41:53] 2025-11-26 22:41:18,187 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:41:53] 2025-11-26 22:41:18,187 | INFO     | ready for new job
[2025-11-26 17:41:53] 2025-11-26 22:41:18,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:41:53] 2025-11-26 22:41:18,279 | INFO     | ***************************************
[2025-11-26 17:41:53] 2025-11-26 22:41:18,280 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:41:53] 2025-11-26 22:41:18,280 | INFO     | ***************************************
[2025-11-26 17:41:53] 2025-11-26 22:41:18,280 | INFO     | 
[2025-11-26 17:41:53] 2025-11-26 22:41:18,360 | INFO     | architecture information:
[2025-11-26 17:41:53] 2025-11-26 22:41:18,433 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:41:53] 2025-11-26 22:41:18,635 | INFO     | cat /etc/os-release:
[2025-11-26 17:41:53] NAME="CentOS Linux"
[2025-11-26 17:41:53] VERSION="7 (Core)"
[2025-11-26 17:41:53] ID="centos"
[2025-11-26 17:41:53] ID_LIKE="rhel fedora"
[2025-11-26 17:41:53] VERSION_ID="7"
[2025-11-26 17:41:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:41:53] ANSI_COLOR="0;31"
[2025-11-26 17:41:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:41:53] HOME_URL="https://www.centos.org/"
[2025-11-26 17:41:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:41:53] 
[2025-11-26 17:41:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:41:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:41:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:41:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:41:53] 
[2025-11-26 17:41:53] 2025-11-26 22:41:18,635 | INFO     | ***************************************
[2025-11-26 17:41:53] 2025-11-26 22:41:19,138 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 17:41:53] 2025-11-26 22:41:19,253 | INFO     | sufficient remaining disk space (64243105792 B)
[2025-11-26 17:41:53] 2025-11-26 22:41:19,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:41:53] 2025-11-26 22:41:19,253 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:41:53] 2025-11-26 22:41:19,254 | INFO     | update_server=False
[2025-11-26 17:41:53] 2025-11-26 22:41:19,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:41:53] 2025-11-26 22:41:19,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:41:53] 2025-11-26 22:41:19,263 | INFO     | aborting loop
[2025-11-26 17:41:53] 2025-11-26 22:41:19,263 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:41:53] 2025-11-26 22:41:19,383 | INFO     | all payload control threads have been joined
[2025-11-26 17:41:53] 2025-11-26 22:41:19,434 | INFO     | all data control threads have been joined
[2025-11-26 17:41:53] 2025-11-26 22:41:19,891 | INFO     | all job control threads have been joined
[2025-11-26 17:41:53] 2025-11-26 22:41:20,275 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,276 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,283 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,409 | INFO     | [payload] control thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,440 | INFO     | [data] control thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,475 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,619 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,662 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,663 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:20,744 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:41:53] 2025-11-26 22:41:20,915 | INFO     | [job] control thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:21,046 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:21,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:21,220 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:21,374 | INFO     | [job] validate thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:22,062 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:41:53] 2025-11-26 22:41:22,769 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:26,074 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:41:53] 2025-11-26 22:41:42,354 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:41:53] 2025-11-26 22:41:43,944 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140210997348160)>', '<ExcThread(monitor, started 140210121721600)>']
[2025-11-26 17:41:53] 2025-11-26 22:41:47,297 | INFO     | PID=1076006 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:41:53] 2025-11-26 22:41:47,297 | INFO     | .. there are 52 such processes running
[2025-11-26 17:41:53] 2025-11-26 22:41:47,297 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:41:53] 2025-11-26 22:41:47,297 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:41:53] 2025-11-26 22:41:47,297 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:41:53] 2025-11-26 22:41:47,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:41:53] 2025-11-26 22:41:47,298 | INFO     | [monitor] control thread has ended
[2025-11-26 17:41:53] 2025-11-26 22:41:48,994 | INFO     | all workflow threads have been joined
[2025-11-26 17:41:53] 2025-11-26 22:41:48,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:41:53] 2025-11-26 22:41:48,995 | INFO     | traces error code: 0
[2025-11-26 17:41:53] 2025-11-26 22:41:48,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:41:53] 2025-11-26 22:41:51,978 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:41:53] 2025-11-26 22:41:52,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:41:53] 2025-11-26 22:41:52,042 [wrapper] pilotpid: 1076006
[2025-11-26 17:41:53] 2025-11-26 22:41:52,057 [wrapper] Pilot exit status: 0
[2025-11-26 17:41:53] 2025-11-26 22:41:52,181 [wrapper] pandaids: 6895386738
[2025-11-26 17:41:53] 2025-11-26 22:41:52,586 [wrapper] cleanup supervisor_pilot 1264005 1076007
[2025-11-26 17:41:53] 2025-11-26 22:41:52,595 [wrapper] Test setup, not cleaning
[2025-11-26 17:41:53] 2025-11-26 22:41:52,621 [wrapper] apfmon messages muted
[2025-11-26 17:41:53] 2025-11-26 22:41:52,643 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:41:53] 2025-11-26 22:41:52,667 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:41:53]  *** Error codes and diagnostics ***
[2025-11-26 17:41:53]     "exeErrorCode": 0,
[2025-11-26 17:41:53]     "exeErrorDiag": "",
[2025-11-26 17:41:53]     "pilotErrorCode": 0,
[2025-11-26 17:41:53]     "pilotErrorDiag": "",
[2025-11-26 17:41:53]  *** Listing of results directory ***
[2025-11-26 17:41:53] total 1315672
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-26 17:41:53] -rwx------. 1 boincer umatlas     36292 Nov 24 01:01 runpilot2-wrapper.sh
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:01 queuedata.json
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas       100 Nov 25 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:41:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 14:18 run_atlas
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas       105 Nov 25 14:18 job.xml
[2025-11-26 17:41:53] -rw-r--r--. 2 boincer umatlas 408572014 Nov 25 14:18 EVNT.47483658._001253.pool.root.1
[2025-11-26 17:41:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:18 start_atlas.sh
[2025-11-26 17:41:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 14:18 shared
[2025-11-26 17:41:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 14:18 input.tar.gz
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas         0 Nov 25 14:18 boinc_lockfile
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 14:18 pandaJob.out
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas        57 Nov 25 14:18 setup.sh.local
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas    991893 Nov 25 14:19 agis_schedconf.cvmfs.json
[2025-11-26 17:41:53] drwx------. 5 boincer umatlas      4096 Nov 25 14:19 pilot3
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:15 boinc_task_state.xml
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas 906844843 Nov 26 17:38 HITS.47556149._002398.pool.root.1
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas      1059 Nov 26 17:40 memory_monitor_summary.json
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas   1516240 Nov 26 17:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas      6877 Nov 26 17:40 init_data.xml
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas   2527148 Nov 26 17:40 log.47556149._002398.job.log.tgz.1
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas      7960 Nov 26 17:41 heartbeat.json
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas        95 Nov 26 17:41 pilot_heartbeat.json
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas      4824 Nov 26 17:41 pilotlog.txt
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 17:41 boinc_mmap_file
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas        29 Nov 26 17:41 wrapper_checkpoint.txt
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas  11427468 Nov 26 17:41 log.47556149._002398.job.log.1
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas       353 Nov 26 17:41 output.list
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas       620 Nov 26 17:41 runtime_log
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas  13977600 Nov 26 17:41 result.tar.gz
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 17:41 runtime_log.err
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas       662 Nov 26 17:41 OU2NDm4oeh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6wIKDmkURntm.diag
[2025-11-26 17:41:53] -rw-r--r--. 1 boincer umatlas     21908 Nov 26 17:41 stderr.txt
[2025-11-26 17:41:53] HITS file was successfully produced:
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas 906844843 Nov 26 17:38 shared/HITS.pool.root.1
[2025-11-26 17:41:53]  *** Contents of shared directory: ***
[2025-11-26 17:41:53] total 1298848
[2025-11-26 17:41:53] -rw-r--r--. 2 boincer umatlas 408572014 Nov 25 14:18 ATLAS.root_0
[2025-11-26 17:41:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:18 start_atlas.sh
[2025-11-26 17:41:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 14:18 input.tar.gz
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas 906844843 Nov 26 17:38 HITS.pool.root.1
[2025-11-26 17:41:53] -rw-------. 1 boincer umatlas  13977600 Nov 26 17:41 result.tar.gz
17:41:55 (1070300): run_atlas exited; CPU time 262776.489931
17:41:55 (1070300): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN