Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:07 (695253): wrapper (7.7.26015): starting
00:12:07 (695253): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:12:07] Arguments: --nthreads 8
[2025-11-25 00:12:07] Threads: 8
[2025-11-25 00:12:07] Checking for CVMFS
[2025-11-25 00:12:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:12:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:12:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:12:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:12:07] 2.13.3.0 7489 28173 382432 153270 0 706 30422216 32935937 22946 16776704 0 184358755 99.646 173689353 41172 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:12:07] CVMFS is ok
[2025-11-25 00:12:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:12:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:12:07] Further information can be found at the LHC@home message board.
[2025-11-25 00:12:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:12:07] Checking for apptainer binary...
[2025-11-25 00:12:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:12:07] Running /usr/bin/apptainer --version
[2025-11-25 00:12:07] apptainer version 1.4.4-1.el9
[2025-11-25 00:12:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:12:08] c7-13-32.aglt2.org
[2025-11-25 00:12:08] apptainer works
[2025-11-25 00:12:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:12:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:12:08] Starting ATLAS job with PandaID=6895386782
[2025-11-25 00:12:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:40:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:40:41] 2025-11-26 05:41:56,317 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.057203124999
[2025-11-26 01:40:41] 2025-11-26 05:41:56,363 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895386782/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:40:41] 2025-11-26 05:41:56,364 | INFO     | extracted standard info from prmon json
[2025-11-26 01:40:41] 2025-11-26 05:41:56,364 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 01:40:41] 2025-11-26 05:41:56,364 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 01:40:41] 2025-11-26 05:41:56,403 | INFO     | fitting pss+swap vs Time
[2025-11-26 01:40:41] 2025-11-26 05:41:56,435 | INFO     | sum of square deviations: 933624320397.4066
[2025-11-26 01:40:41] 2025-11-26 05:41:56,531 | INFO     | sum of deviations: 4313091018375.983
[2025-11-26 01:40:41] 2025-11-26 05:41:56,541 | INFO     | mean x: 1764091624.171745
[2025-11-26 01:40:41] 2025-11-26 05:41:56,541 | INFO     | mean y: 2894147.2299168976
[2025-11-26 01:40:41] 2025-11-26 05:41:56,541 | INFO     | intersect: -8146730464.700437
[2025-11-26 01:40:41] 2025-11-26 05:41:56,542 | INFO     | chi2: 9.887212660373212
[2025-11-26 01:40:41] 2025-11-26 05:41:56,555 | INFO     | sum of square deviations: 923960112648.3851
[2025-11-26 01:40:41] 2025-11-26 05:41:56,690 | INFO     | time since job start (88166s) is within the limit (172800.0s)
[2025-11-26 01:40:41] 2025-11-26 05:41:56,705 | INFO     | sum of deviations: 4829235426344.467
[2025-11-26 01:40:41] 2025-11-26 05:41:56,706 | INFO     | mean x: 1764091471.677554
[2025-11-26 01:40:41] 2025-11-26 05:41:56,706 | INFO     | mean y: 2902291.7359277275
[2025-11-26 01:40:41] 2025-11-26 05:41:56,716 | INFO     | intersect: -9217423254.481016
[2025-11-26 01:40:41] 2025-11-26 05:41:56,717 | INFO     | chi2: 6.334577297359769
[2025-11-26 01:40:41] 2025-11-26 05:41:56,717 | INFO     | current chi2=6.334577297359769 (change=35.9316167766067 %)
[2025-11-26 01:40:41] 2025-11-26 05:41:56,719 | INFO     | sum of square deviations: 914362836386.7671
[2025-11-26 01:40:41] 2025-11-26 05:41:56,916 | INFO     | sum of deviations: 5220331994685.95
[2025-11-26 01:40:41] 2025-11-26 05:41:56,916 | INFO     | mean x: 1764091319.183403
[2025-11-26 01:40:41] 2025-11-26 05:41:56,916 | INFO     | mean y: 2908501.5020920504
[2025-11-26 01:40:41] 2025-11-26 05:41:56,916 | INFO     | intersect: -10068741382.554964
[2025-11-26 01:40:41] 2025-11-26 05:41:56,917 | INFO     | chi2: 3.9221747500955484
[2025-11-26 01:40:41] 2025-11-26 05:41:56,917 | INFO     | current chi2=3.9221747500955484 (change=38.08308643213971 %)
[2025-11-26 01:40:41] 2025-11-26 05:41:56,935 | INFO     | sum of square deviations: 904831996513.1752
[2025-11-26 01:40:41] 2025-11-26 05:41:57,100 | INFO     | sum of deviations: 5430637874989.825
[2025-11-26 01:40:41] 2025-11-26 05:41:57,101 | INFO     | mean x: 1764091166.6871939
[2025-11-26 01:40:41] 2025-11-26 05:41:57,101 | INFO     | mean y: 2911866.4716585022
[2025-11-26 01:40:41] 2025-11-26 05:41:57,101 | INFO     | intersect: -10584844028.174103
[2025-11-26 01:40:41] 2025-11-26 05:41:57,102 | INFO     | chi2: 3.173548412597094
[2025-11-26 01:40:41] 2025-11-26 05:41:57,102 | INFO     | current chi2=3.173548412597094 (change=19.087021491844975 %)
[2025-11-26 01:40:41] 2025-11-26 05:41:57,102 | INFO     | right removable region: 1428
[2025-11-26 01:40:41] 2025-11-26 05:41:57,121 | INFO     | sum of square deviations: 923958991717.7878
[2025-11-26 01:40:41] 2025-11-26 05:41:57,565 | INFO     | sum of deviations: 3950655213112.3813
[2025-11-26 01:40:41] 2025-11-26 05:41:57,565 | INFO     | mean x: 1764091776.6747742
[2025-11-26 01:40:41] 2025-11-26 05:41:57,565 | INFO     | mean y: 2899860.024322446
[2025-11-26 01:40:41] 2025-11-26 05:41:57,565 | INFO     | intersect: -7539987255.530232
[2025-11-26 01:40:41] 2025-11-26 05:41:57,566 | INFO     | chi2: 7.959720340137488
[2025-11-26 01:40:41] 2025-11-26 05:41:57,566 | INFO     | current chi2=7.959720340137488 (change=19.4947998636753 %)
[2025-11-26 01:40:41] 2025-11-26 05:41:57,567 | INFO     | left removable region: 10
[2025-11-26 01:40:41] 2025-11-26 05:41:57,568 | INFO     | sum of square deviations: 884096374499.9705
[2025-11-26 01:40:41] 2025-11-26 05:41:57,639 | INFO     | sum of deviations: 4958499968137.149
[2025-11-26 01:40:41] 2025-11-26 05:41:57,639 | INFO     | mean x: 1764091441.1897037
[2025-11-26 01:40:41] 2025-11-26 05:41:57,640 | INFO     | mean y: 2920571.9139633286
[2025-11-26 01:40:41] 2025-11-26 05:41:57,640 | INFO     | intersect: -9891076968.656717
[2025-11-26 01:40:41] 2025-11-26 05:41:57,641 | INFO     | chi2: 0.9946597081263399
[2025-11-26 01:40:41] 2025-11-26 05:41:57,641 | INFO     | current memory leak: 5.61 B/s (using 1418 data points, chi2=0.99)
[2025-11-26 01:40:41] 2025-11-26 05:41:57,642 | INFO     | could have reported an average CPU frequency of 3290 MHz (52 samples)
[2025-11-26 01:40:41] 2025-11-26 05:41:57,642 | INFO     | ..............................
[2025-11-26 01:40:41] 2025-11-26 05:41:57,642 | INFO     | . Timing measurements:
[2025-11-26 01:40:41] 2025-11-26 05:41:57,642 | INFO     | . get job = 0 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,643 | INFO     | . initial setup = 2 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,643 | INFO     | . payload setup = 12 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,643 | INFO     | . stage-in = 0 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,643 | INFO     | . payload execution = 88086 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,643 | INFO     | . stage-out = 7 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,643 | INFO     | . log creation = 2 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,643 | INFO     | ..............................
[2025-11-26 01:40:41] 2025-11-26 05:41:57,869 | INFO     | 
[2025-11-26 01:40:41] 2025-11-26 05:41:57,878 | INFO     | job summary report
[2025-11-26 01:40:41] 2025-11-26 05:41:57,878 | INFO     | --------------------------------------------------
[2025-11-26 01:40:41] 2025-11-26 05:41:57,878 | INFO     | PanDA job id: 6895386782
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | task id: 47556161
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | errors: (none)
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | pilot state: finished 
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | transexitcode: 0
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | exeerrorcode: 0
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | exeerrordiag: 
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | exitcode: 0
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | exitmsg: OK
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | cpuconsumptiontime: 198954 s
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | nevents: 1000
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | neventsw: 0
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | pid: 737195
[2025-11-26 01:40:41] 2025-11-26 05:41:57,879 | INFO     | pgrp: 737195
[2025-11-26 01:40:41] 2025-11-26 05:41:57,880 | INFO     | corecount: 8
[2025-11-26 01:40:41] 2025-11-26 05:41:57,880 | INFO     | event service: False
[2025-11-26 01:40:41] 2025-11-26 05:41:57,903 | INFO     | sizes: {0: 2284305, 11: 2284305, 12: 2284595, 22: 2284623, 88103: 2350160, 88104: 2350159, 88113: 2359342, 88115: 2359398, 88132: 2359644}
[2025-11-26 01:40:41] 2025-11-26 05:41:57,903 | INFO     | --------------------------------------------------
[2025-11-26 01:40:41] 2025-11-26 05:41:57,903 | INFO     | 
[2025-11-26 01:40:41] 2025-11-26 05:41:57,903 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 01:40:41] 2025-11-26 05:41:57,964 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,966 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,966 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:40:41] 2025-11-26 05:41:57,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,966 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:40:41] 2025-11-26 05:41:57,966 | INFO     | job 6895386782 has completed (purged errors)
[2025-11-26 01:40:41] 2025-11-26 05:41:57,966 | INFO     | overall cleanup function is called
[2025-11-26 01:40:41] 2025-11-26 05:41:59,055 | INFO     | --- collectZombieJob: --- 10, [737195]
[2025-11-26 01:40:41] 2025-11-26 05:41:59,057 | INFO     | zombie collector waiting for pid 737195
[2025-11-26 01:40:41] 2025-11-26 05:41:59,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:40:41] 2025-11-26 05:41:59,057 | INFO     | collected zombie processes
[2025-11-26 01:40:41] 2025-11-26 05:41:59,057 | INFO     | will attempt to kill all subprocesses of pid=737195
[2025-11-26 01:40:41] 2025-11-26 05:41:59,954 | INFO     | process IDs to be killed: [737195] (in reverse order)
[2025-11-26 01:40:41] 2025-11-26 05:42:00,122 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:40:41] 2025-11-26 05:42:00,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:40:41] 2025-11-26 05:42:00,147 | INFO     | did not find any defunct processes belonging to 737195
[2025-11-26 01:40:41] 2025-11-26 05:42:00,181 | INFO     | did not find any defunct processes belonging to 737195
[2025-11-26 01:40:41] 2025-11-26 05:42:00,187 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:40:41] 2025-11-26 05:42:00,187 | INFO     | ready for new job
[2025-11-26 01:40:41] 2025-11-26 05:42:00,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:40:41] 2025-11-26 05:42:00,222 | INFO     | ***************************************
[2025-11-26 01:40:41] 2025-11-26 05:42:00,222 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:40:41] 2025-11-26 05:42:00,222 | INFO     | ***************************************
[2025-11-26 01:40:41] 2025-11-26 05:42:00,222 | INFO     | 
[2025-11-26 01:40:41] 2025-11-26 05:42:00,234 | INFO     | architecture information:
[2025-11-26 01:40:41] 2025-11-26 05:42:00,246 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:40:41] 2025-11-26 05:42:00,359 | INFO     | cat /etc/os-release:
[2025-11-26 01:40:41] NAME="CentOS Linux"
[2025-11-26 01:40:41] VERSION="7 (Core)"
[2025-11-26 01:40:41] ID="centos"
[2025-11-26 01:40:41] ID_LIKE="rhel fedora"
[2025-11-26 01:40:41] VERSION_ID="7"
[2025-11-26 01:40:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:40:41] ANSI_COLOR="0;31"
[2025-11-26 01:40:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:40:41] HOME_URL="https://www.centos.org/"
[2025-11-26 01:40:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:40:41] 
[2025-11-26 01:40:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:40:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:40:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:40:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:40:41] 
[2025-11-26 01:40:41] 2025-11-26 05:42:00,360 | INFO     | ***************************************
[2025-11-26 01:40:41] 2025-11-26 05:42:00,863 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 01:40:41] 2025-11-26 05:42:00,960 | INFO     | sufficient remaining disk space (87673536512 B)
[2025-11-26 01:40:41] 2025-11-26 05:42:00,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:40:41] 2025-11-26 05:42:00,961 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:40:41] 2025-11-26 05:42:00,961 | INFO     | update_server=False
[2025-11-26 01:40:41] 2025-11-26 05:42:00,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:40:41] 2025-11-26 05:42:00,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:40:41] 2025-11-26 05:42:01,084 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 01:40:41] 2025-11-26 05:42:01,084 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 01:40:41] 2025-11-26 05:42:01,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:40:41] 2025-11-26 05:42:01,085 | INFO     | will abort loop
[2025-11-26 01:40:41] 2025-11-26 05:42:01,223 | INFO     | all data control threads have been joined
[2025-11-26 01:40:41] 2025-11-26 05:42:01,966 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:01,982 | INFO     | all payload control threads have been joined
[2025-11-26 01:40:41] 2025-11-26 05:42:02,091 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,144 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:40:41] 2025-11-26 05:42:02,229 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,237 | INFO     | [data] control thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,349 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,429 | INFO     | [job] validate thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,528 | INFO     | all job control threads have been joined
[2025-11-26 01:40:41] 2025-11-26 05:42:02,557 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,599 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:02,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:40:41] 2025-11-26 05:42:02,989 | INFO     | [payload] control thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:03,166 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:03,331 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:03,536 | INFO     | [job] control thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:03,939 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:04,164 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:04,980 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:40:41] 2025-11-26 05:42:07,280 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:40:41] 2025-11-26 05:42:08,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626961479488)>', '<ExcThread(monitor, started 139626459145984)>']
[2025-11-26 01:40:41] 2025-11-26 05:42:13,621 | INFO     | all workflow threads have been joined
[2025-11-26 01:40:41] 2025-11-26 05:42:13,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:40:41] 2025-11-26 05:42:13,621 | INFO     | traces error code: 0
[2025-11-26 01:40:41] 2025-11-26 05:42:13,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:40:41] 2025-11-26 05:42:30,687 | INFO     | PID=707707 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 01:40:41] 2025-11-26 05:42:30,688 | INFO     | .. there are 36 such processes running
[2025-11-26 01:40:41] 2025-11-26 05:42:30,688 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:40:41] 2025-11-26 05:42:30,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:40:41] 2025-11-26 05:42:30,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:40:41] 2025-11-26 05:42:30,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:40:41] 2025-11-26 05:42:30,688 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 01:40:41] 2025-11-26 05:42:30,688 | INFO     | [monitor] control thread has ended
[2025-11-26 01:40:41] 2025-11-26 05:42:31,134 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:40:41] 2025-11-26 05:42:31,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:40:41] 2025-11-26 05:42:31,148 [wrapper] pilotpid: 707707
[2025-11-26 01:40:41] 2025-11-26 05:42:31,157 [wrapper] Pilot exit status: 0
[2025-11-26 01:40:41] 2025-11-26 05:42:31,202 [wrapper] pandaids: 6895386782
[2025-11-26 01:40:41] 2025-11-26 05:42:31,308 [wrapper] cleanup supervisor_pilot 1593328 707708
[2025-11-26 01:40:41] 2025-11-26 05:42:31,333 [wrapper] Test setup, not cleaning
[2025-11-26 01:40:41] 2025-11-26 05:42:31,358 [wrapper] apfmon messages muted
[2025-11-26 01:40:41] 2025-11-26 05:42:31,370 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:40:41] 2025-11-26 05:42:31,384 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:40:41]  *** Error codes and diagnostics ***
[2025-11-26 01:40:41]     "exeErrorCode": 0,
[2025-11-26 01:40:41]     "exeErrorDiag": "",
[2025-11-26 01:40:41]     "pilotErrorCode": 0,
[2025-11-26 01:40:41]     "pilotErrorDiag": "",
[2025-11-26 01:40:41]  *** Listing of results directory ***
[2025-11-26 01:40:41] total 1327452
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-26 01:40:41] -rwx------. 1 boincer umatlas     36292 Nov 24 01:12 runpilot2-wrapper.sh
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:12 queuedata.json
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:40:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:12 run_atlas
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:12 job.xml
[2025-11-26 01:40:41] -rw-r--r--. 2 boincer umatlas 409938083 Nov 25 00:12 EVNT.47483658._002023.pool.root.1
[2025-11-26 01:40:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:12 start_atlas.sh
[2025-11-26 01:40:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:12 shared
[2025-11-26 01:40:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:12 input.tar.gz
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:12 boinc_lockfile
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 00:12 pandaJob.out
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas        57 Nov 25 00:12 setup.sh.local
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas    991801 Nov 25 00:12 agis_schedconf.cvmfs.json
[2025-11-26 01:40:41] drwx------. 5 boincer umatlas      4096 Nov 25 00:12 pilot3
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas       533 Nov 26 00:14 boinc_task_state.xml
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas 918115812 Nov 26 00:39 HITS.47556161._000065.pool.root.1
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas      1049 Nov 26 00:41 memory_monitor_summary.json
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas   1516240 Nov 26 00:41 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas   2465126 Nov 26 00:41 log.47556161._000065.job.log.tgz.1
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas        95 Nov 26 00:41 pilot_heartbeat.json
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas      8575 Nov 26 00:41 heartbeat.json
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas       892 Nov 26 00:42 pilotlog.txt
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas  11214247 Nov 26 00:42 log.47556161._000065.job.log.1
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas       353 Nov 26 00:42 output.list
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas       620 Nov 26 00:42 runtime_log
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas  13701120 Nov 26 00:42 result.tar.gz
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 00:42 runtime_log.err
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas       661 Nov 26 00:42 EdyMDmpzeh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBxIKDmW9PxIo.diag
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas      6903 Nov 26 01:40 init_data.xml
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 01:40 boinc_mmap_file
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas        29 Nov 26 01:40 wrapper_checkpoint.txt
[2025-11-26 01:40:41] -rw-r--r--. 1 boincer umatlas      2141 Nov 26 01:40 stderr.txt
[2025-11-26 01:40:41] HITS file was successfully produced:
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas 918115812 Nov 26 00:39 shared/HITS.pool.root.1
[2025-11-26 01:40:41]  *** Contents of shared directory: ***
[2025-11-26 01:40:41] total 1310916
[2025-11-26 01:40:41] -rw-r--r--. 2 boincer umatlas 409938083 Nov 25 00:12 ATLAS.root_0
[2025-11-26 01:40:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:12 start_atlas.sh
[2025-11-26 01:40:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:12 input.tar.gz
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas 918115812 Nov 26 00:39 HITS.pool.root.1
[2025-11-26 01:40:41] -rw-------. 1 boincer umatlas  13701120 Nov 26 00:42 result.tar.gz
01:40:43 (695253): run_atlas exited; CPU time 199305.085979
01:40:43 (695253): called boinc_finish(0)

</stderr_txt>
]]>

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