Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:52:18 (2072192): wrapper (7.7.26015): starting
15:52:18 (2072192): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 15:52:18] Arguments: --nthreads 9
[2025-11-25 15:52:18] Threads: 9
[2025-11-25 15:52:18] Checking for CVMFS
[2025-11-25 15:52:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:52:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:52:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:52:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:52:20] 2.13.3.0 11322 29114 232348 153297 2 101 24381648 32935936 24983 16776704 0 48089398 99.601 47433491 38381 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 15:52:20] CVMFS is ok
[2025-11-25 15:52:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:52:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:52:20] Further information can be found at the LHC@home message board.
[2025-11-25 15:52:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:52:20] Checking for apptainer binary...
[2025-11-25 15:52:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:52:20] Running /usr/bin/apptainer --version
[2025-11-25 15:52:20] apptainer version 1.4.4-1.el9
[2025-11-25 15:52:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:52:21] c6-1-26-4.aglt2.org
[2025-11-25 15:52:21] apptainer works
[2025-11-25 15:52:21] Set ATHENA_PROC_NUMBER=9
[2025-11-25 15:52:21] Set ATHENA_CORE_NUMBER=9
[2025-11-25 15:52:21] Starting ATLAS job with PandaID=6895386780
[2025-11-25 15:52:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:00:22 (2100237): wrapper (7.7.26015): starting
16:00:22 (2100237): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 16:00:22] Arguments: --nthreads 9
[2025-11-25 16:00:22] Threads: 9
[2025-11-25 16:00:22] This job has been restarted, cleaning up previous attempt
[2025-11-25 16:00:22] Checking for CVMFS
[2025-11-25 16:00:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:00:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:00:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:00:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:00:22] 2.13.3.0 11322 29122 231148 153297 2 101 24392331 32935936 20462 16776704 0 48145505 99.601 47433492 38381 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:00:22] CVMFS is ok
[2025-11-25 16:00:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:00:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:00:22] Further information can be found at the LHC@home message board.
[2025-11-25 16:00:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:00:22] Checking for apptainer binary...
[2025-11-25 16:00:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:00:22] Running /usr/bin/apptainer --version
[2025-11-25 16:00:22] apptainer version 1.4.4-1.el9
[2025-11-25 16:00:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:00:22] c6-1-26-4.aglt2.org
[2025-11-25 16:00:22] apptainer works
[2025-11-25 16:00:22] Set ATHENA_PROC_NUMBER=9
[2025-11-25 16:00:22] Set ATHENA_CORE_NUMBER=9
[2025-11-25 16:00:22] Starting ATLAS job with PandaID=6895386780
[2025-11-25 16:00:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:53:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:53:27] 2025-11-26 13:52:42,547 | INFO     | monitor loop #3692: job 0:6895386780 is in state 'finished'
[2025-11-26 08:53:27] 2025-11-26 13:52:42,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,295 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:53:27] 2025-11-26 13:52:43,298 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2928.941196428571
[2025-11-26 08:53:27] 2025-11-26 13:52:43,311 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895386780/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,312 | INFO     | extracted standard info from prmon json
[2025-11-26 08:53:27] 2025-11-26 13:52:43,312 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:53:27] 2025-11-26 13:52:43,312 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:53:27] 2025-11-26 13:52:43,326 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:53:27] 2025-11-26 13:52:43,328 | INFO     | sum of square deviations: 305458784464.4363
[2025-11-26 08:53:27] 2025-11-26 13:52:43,346 | INFO     | sum of deviations: 1951149308224.9648
[2025-11-26 08:53:27] 2025-11-26 13:52:43,346 | INFO     | mean x: 1764134777.234171
[2025-11-26 08:53:27] 2025-11-26 13:52:43,347 | INFO     | mean y: 3062748.7597989948
[2025-11-26 08:53:27] 2025-11-26 13:52:43,347 | INFO     | intersect: -11265529039.33071
[2025-11-26 08:53:27] 2025-11-26 13:52:43,348 | INFO     | chi2: 5.374575953163504
[2025-11-26 08:53:27] 2025-11-26 13:52:43,349 | INFO     | sum of square deviations: 300877711431.8543
[2025-11-26 08:53:27] 2025-11-26 13:52:43,368 | INFO     | sum of deviations: 2269065233339.8525
[2025-11-26 08:53:27] 2025-11-26 13:52:43,368 | INFO     | mean x: 1764134624.7454545
[2025-11-26 08:53:27] 2025-11-26 13:52:43,368 | INFO     | mean y: 3073328.2454545456
[2025-11-26 08:53:27] 2025-11-26 13:52:43,368 | INFO     | intersect: -13301124330.30255
[2025-11-26 08:53:27] 2025-11-26 13:52:43,370 | INFO     | chi2: 2.766291672223412
[2025-11-26 08:53:27] 2025-11-26 13:52:43,370 | INFO     | current chi2=2.766291672223412 (change=48.53004783391036 %)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,371 | INFO     | sum of square deviations: 296342685774.0163
[2025-11-26 08:53:27] 2025-11-26 13:52:43,387 | INFO     | sum of deviations: 2408017387740.802
[2025-11-26 08:53:27] 2025-11-26 13:52:43,388 | INFO     | mean x: 1764134472.2568529
[2025-11-26 08:53:27] 2025-11-26 13:52:43,388 | INFO     | mean y: 3077996.1035532993
[2025-11-26 08:53:27] 2025-11-26 13:52:43,388 | INFO     | intersect: -14331902036.934673
[2025-11-26 08:53:27] 2025-11-26 13:52:43,389 | INFO     | chi2: 2.108411922231963
[2025-11-26 08:53:27] 2025-11-26 13:52:43,389 | INFO     | current chi2=2.108411922231963 (change=23.7820095616554 %)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,389 | INFO     | right removable region: 984
[2025-11-26 08:53:27] 2025-11-26 13:52:43,390 | INFO     | sum of square deviations: 300876476432.8323
[2025-11-26 08:53:27] 2025-11-26 13:52:43,408 | INFO     | sum of deviations: 1695561274374.3313
[2025-11-26 08:53:27] 2025-11-26 13:52:43,408 | INFO     | mean x: 1764134929.7434344
[2025-11-26 08:53:27] 2025-11-26 13:52:43,408 | INFO     | mean y: 3071242.473737374
[2025-11-26 08:53:27] 2025-11-26 13:52:43,408 | INFO     | intersect: -9938546344.60873
[2025-11-26 08:53:27] 2025-11-26 13:52:43,409 | INFO     | chi2: 3.532038823807917
[2025-11-26 08:53:27] 2025-11-26 13:52:43,410 | INFO     | current chi2=3.532038823807917 (change=34.282465173295385 %)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,411 | INFO     | sum of square deviations: 296340457834.06085
[2025-11-26 08:53:27] 2025-11-26 13:52:43,424 | INFO     | sum of deviations: 1614874047806.4111
[2025-11-26 08:53:27] 2025-11-26 13:52:43,425 | INFO     | mean x: 1764135082.248731
[2025-11-26 08:53:27] 2025-11-26 13:52:43,425 | INFO     | mean y: 3073954.32893401
[2025-11-26 08:53:27] 2025-11-26 13:52:43,425 | INFO     | intersect: -9610382075.16655
[2025-11-26 08:53:27] 2025-11-26 13:52:43,425 | INFO     | chi2: 3.4577333008031
[2025-11-26 08:53:27] 2025-11-26 13:52:43,426 | INFO     | current chi2=3.4577333008031 (change=2.1037572549870145 %)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,426 | INFO     | left removable region: 20
[2025-11-26 08:53:27] 2025-11-26 13:52:43,426 | INFO     | sum of square deviations: 277789058834.8155
[2025-11-26 08:53:27] 2025-11-26 13:52:43,437 | INFO     | sum of deviations: 1946514511837.6172
[2025-11-26 08:53:27] 2025-11-26 13:52:43,437 | INFO     | mean x: 1764135051.7811203
[2025-11-26 08:53:27] 2025-11-26 13:52:43,437 | INFO     | mean y: 3093712.9128630706
[2025-11-26 08:53:27] 2025-11-26 13:52:43,437 | INFO     | intersect: -12358496385.476507
[2025-11-26 08:53:27] 2025-11-26 13:52:43,438 | INFO     | chi2: 0.12970996180508024
[2025-11-26 08:53:27] 2025-11-26 13:52:43,438 | INFO     | current memory leak: 7.01 B/s (using 964 data points, chi2=0.13)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | could have reported an average CPU frequency of 3001 MHz (36 samples)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | ..............................
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . Timing measurements:
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . get job = 0 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . initial setup = 0 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . payload setup = 5 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . stage-in = 0 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . payload execution = 60691 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . stage-out = 3 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | . log creation = 0 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,439 | INFO     | ..............................
[2025-11-26 08:53:27] 2025-11-26 13:52:43,522 | INFO     | 
[2025-11-26 08:53:27] 2025-11-26 13:52:43,522 | INFO     | job summary report
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | --------------------------------------------------
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | PanDA job id: 6895386780
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | task id: 47556161
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | errors: (none)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | pilot state: finished 
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | transexitcode: 0
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | exeerrorcode: 0
[2025-11-26 08:53:27] 2025-11-26 13:52:43,523 | INFO     | exeerrordiag: 
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | exitcode: 0
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | exitmsg: OK
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | cpuconsumptiontime: 235137 s
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | nevents: 1000
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | neventsw: 0
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | pid: 2150558
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | pgrp: 2150558
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | corecount: 9
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | event service: False
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | sizes: {0: 2284196, 4: 2284572, 11: 2284600, 60700: 2337324, 60704: 2346318, 60707: 2346374, 60715: 2346748}
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | --------------------------------------------------
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | 
[2025-11-26 08:53:27] 2025-11-26 13:52:43,524 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 08:53:27] 2025-11-26 13:52:43,543 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,543 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,543 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,544 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,545 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,545 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,545 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:53:27] 2025-11-26 13:52:43,545 | INFO     | job 6895386780 has completed (purged errors)
[2025-11-26 08:53:27] 2025-11-26 13:52:43,545 | INFO     | overall cleanup function is called
[2025-11-26 08:53:27] 2025-11-26 13:52:44,561 | INFO     | --- collectZombieJob: --- 10, [2150558]
[2025-11-26 08:53:27] 2025-11-26 13:52:44,563 | INFO     | zombie collector waiting for pid 2150558
[2025-11-26 08:53:27] 2025-11-26 13:52:44,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:53:27] 2025-11-26 13:52:44,564 | INFO     | collected zombie processes
[2025-11-26 08:53:27] 2025-11-26 13:52:44,564 | INFO     | will attempt to kill all subprocesses of pid=2150558
[2025-11-26 08:53:27] 2025-11-26 13:52:44,930 | INFO     | process IDs to be killed: [2150558] (in reverse order)
[2025-11-26 08:53:27] 2025-11-26 13:52:45,064 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:53:27] 2025-11-26 13:52:45,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:53:27] 2025-11-26 13:52:45,085 | INFO     | did not find any defunct processes belonging to 2150558
[2025-11-26 08:53:27] 2025-11-26 13:52:45,101 | INFO     | did not find any defunct processes belonging to 2150558
[2025-11-26 08:53:27] 2025-11-26 13:52:45,102 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:53:27] 2025-11-26 13:52:45,102 | INFO     | ready for new job
[2025-11-26 08:53:27] 2025-11-26 13:52:45,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:53:27] 2025-11-26 13:52:45,107 | INFO     | ***************************************
[2025-11-26 08:53:27] 2025-11-26 13:52:45,107 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:53:27] 2025-11-26 13:52:45,107 | INFO     | ***************************************
[2025-11-26 08:53:27] 2025-11-26 13:52:45,107 | INFO     | 
[2025-11-26 08:53:27] 2025-11-26 13:52:45,110 | INFO     | architecture information:
[2025-11-26 08:53:27] 2025-11-26 13:52:45,111 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:53:27] 2025-11-26 13:52:45,125 | INFO     | cat /etc/os-release:
[2025-11-26 08:53:27] NAME="CentOS Linux"
[2025-11-26 08:53:27] VERSION="7 (Core)"
[2025-11-26 08:53:27] ID="centos"
[2025-11-26 08:53:27] ID_LIKE="rhel fedora"
[2025-11-26 08:53:27] VERSION_ID="7"
[2025-11-26 08:53:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:53:27] ANSI_COLOR="0;31"
[2025-11-26 08:53:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:53:27] HOME_URL="https://www.centos.org/"
[2025-11-26 08:53:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:53:27] 
[2025-11-26 08:53:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:53:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:53:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:53:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:53:27] 
[2025-11-26 08:53:27] 2025-11-26 13:52:45,126 | INFO     | ***************************************
[2025-11-26 08:53:27] 2025-11-26 13:52:45,629 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 08:53:27] 2025-11-26 13:52:45,659 | INFO     | sufficient remaining disk space (68802314240 B)
[2025-11-26 08:53:27] 2025-11-26 13:52:45,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:53:27] 2025-11-26 13:52:45,660 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:53:27] 2025-11-26 13:52:45,660 | INFO     | update_server=False
[2025-11-26 08:53:27] 2025-11-26 13:52:45,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:53:27] 2025-11-26 13:52:45,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:53:27] 2025-11-26 13:52:45,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:53:27] 2025-11-26 13:52:46,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:53:27] 2025-11-26 13:52:46,059 | INFO     | aborting loop
[2025-11-26 08:53:27] 2025-11-26 13:52:46,435 | INFO     | all payload control threads have been joined
[2025-11-26 08:53:27] 2025-11-26 13:52:46,666 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:46,703 | INFO     | all data control threads have been joined
[2025-11-26 08:53:27] 2025-11-26 13:52:46,805 | INFO     | [job] validate thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:46,832 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:46,848 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:46,857 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:46,888 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:47,064 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:47,186 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:47,257 | INFO     | all job control threads have been joined
[2025-11-26 08:53:27] 2025-11-26 13:52:47,440 | INFO     | [payload] control thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:47,666 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:47,710 | INFO     | [data] control thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:48,055 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:48,263 | INFO     | [job] control thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:48,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:53:27] 2025-11-26 13:52:49,547 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:49,990 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:52:55,943 | INFO     | job.realtimelogging is not enabled
[2025-11-26 08:53:27] 2025-11-26 13:52:56,949 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:53:27] 2025-11-26 13:53:15,349 | INFO     | PID=2118948 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:53:27] 2025-11-26 13:53:15,351 | INFO     | .. there are 32 such processes running
[2025-11-26 08:53:27] 2025-11-26 13:53:15,352 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:53:27] 2025-11-26 13:53:15,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:53:27] 2025-11-26 13:53:15,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:53:27] 2025-11-26 13:53:20,414 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:53:27] 2025-11-26 13:53:22,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140078344353600)>', '<ExcThread(monitor, started 140077866936064)>']
[2025-11-26 08:53:27] 2025-11-26 13:53:23,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:53:27] 2025-11-26 13:53:23,397 | INFO     | [monitor] control thread has ended
[2025-11-26 08:53:27] 2025-11-26 13:53:27,552 | INFO     | all workflow threads have been joined
[2025-11-26 08:53:27] 2025-11-26 13:53:27,552 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:53:27] 2025-11-26 13:53:27,553 | INFO     | traces error code: 0
[2025-11-26 08:53:27] 2025-11-26 13:53:27,553 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:53:27] 2025-11-26 13:53:27,725 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:53:27] 2025-11-26 13:53:27,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:53:27] 2025-11-26 13:53:27,731 [wrapper] pilotpid: 2118948
[2025-11-26 08:53:27] 2025-11-26 13:53:27,733 [wrapper] Pilot exit status: 0
[2025-11-26 08:53:27] 2025-11-26 13:53:27,746 [wrapper] pandaids: 6895386780 6895386780
[2025-11-26 08:53:27] 2025-11-26 13:53:27,840 [wrapper] cleanup supervisor_pilot 1229512 2118949
[2025-11-26 08:53:27] 2025-11-26 13:53:27,844 [wrapper] Test setup, not cleaning
[2025-11-26 08:53:27] 2025-11-26 13:53:27,852 [wrapper] apfmon messages muted
[2025-11-26 08:53:27] 2025-11-26 13:53:27,863 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:53:27] 2025-11-26 13:53:27,866 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:53:27]  *** Error codes and diagnostics ***
[2025-11-26 08:53:27]     "exeErrorCode": 0,
[2025-11-26 08:53:27]     "exeErrorDiag": "",
[2025-11-26 08:53:27]     "pilotErrorCode": 0,
[2025-11-26 08:53:27]     "pilotErrorDiag": "",
[2025-11-26 08:53:27]  *** Listing of results directory ***
[2025-11-26 08:53:27] total 1712676
[2025-11-26 08:53:27] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-26 08:53:27] -rwx------. 1 boincer umatlas     36292 Nov 24 01:12 runpilot2-wrapper.sh
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:12 queuedata.json
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:53:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 15:52 run_atlas
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 15:52 job.xml
[2025-11-26 08:53:27] -rw-r--r--. 3 boincer umatlas 409938083 Nov 25 15:52 EVNT.47483658._002023.pool.root.1
[2025-11-26 08:53:27] -rw-r--r--. 3 boincer umatlas 409938083 Nov 25 15:52 ATLAS.root_0
[2025-11-26 08:53:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 15:52 shared
[2025-11-26 08:53:27] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 15:52 input.tar.gz
[2025-11-26 08:53:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 15:52 start_atlas.sh
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 15:52 boinc_lockfile
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 16:00 pandaJob.out
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas        57 Nov 25 16:00 setup.sh.local
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas    991893 Nov 25 16:00 agis_schedconf.cvmfs.json
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:41 boinc_task_state.xml
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas      6846 Nov 26 08:47 init_data.xml
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas 909963533 Nov 26 08:51 HITS.47556161._000063.pool.root.1
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas      1055 Nov 26 08:52 memory_monitor_summary.json
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas   2245686 Nov 26 08:52 log.47556161._000063.job.log.tgz.1
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas      8630 Nov 26 08:52 heartbeat.json
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas        95 Nov 26 08:53 pilot_heartbeat.json
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:53 wrapper_checkpoint.txt
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas      4896 Nov 26 08:53 pilotlog.txt
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas   7757033 Nov 26 08:53 log.47556161._000063.job.log.1
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:53 boinc_mmap_file
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas       353 Nov 26 08:53 output.list
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:53 runtime_log
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas  10024960 Nov 26 08:53 result.tar.gz
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas      9433 Nov 26 08:53 runtime_log.err
[2025-11-26 08:53:27] -rw-------. 1 boincer umatlas       786 Nov 26 08:53 PguMDmpzeh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9wIKDm1nsjpm.diag
[2025-11-26 08:53:27] -rw-r--r--. 1 boincer umatlas     23458 Nov 26 08:53 stderr.txt
[2025-11-26 08:53:28] HITS file was successfully produced:
[2025-11-26 08:53:28] -rw-------. 1 boincer umatlas 909963533 Nov 26 08:51 shared/HITS.pool.root.1
[2025-11-26 08:53:28]  *** Contents of shared directory: ***
[2025-11-26 08:53:28] total 1299368
[2025-11-26 08:53:28] -rw-r--r--. 3 boincer umatlas 409938083 Nov 25 15:52 ATLAS.root_0
[2025-11-26 08:53:28] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 15:52 input.tar.gz
[2025-11-26 08:53:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 15:52 start_atlas.sh
[2025-11-26 08:53:28] -rw-------. 1 boincer umatlas 909963533 Nov 26 08:51 HITS.pool.root.1
[2025-11-26 08:53:28] -rw-------. 1 boincer umatlas  10024960 Nov 26 08:53 result.tar.gz
08:53:49 (2100237): run_atlas exited; CPU time 236533.622250
08:53:49 (2100237): called boinc_finish(0)

</stderr_txt>
]]>

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