Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:38 (4054764): wrapper (7.7.26015): starting
00:09:38 (4054764): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:09:38] Arguments: --nthreads 8
[2025-11-25 00:09:38] Threads: 8
[2025-11-25 00:09:38] Checking for CVMFS
[2025-11-25 00:09:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:09:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:09:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:09:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:09:39] 2.13.3.0 10954 28169 380132 153270 3 178 31949268 32935936 27060 16776704 26 124205366 99.462 184149323 39944 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:09:39] CVMFS is ok
[2025-11-25 00:09:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:09:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:09:39] Further information can be found at the LHC@home message board.
[2025-11-25 00:09:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:09:39] Checking for apptainer binary...
[2025-11-25 00:09:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:09:39] Running /usr/bin/apptainer --version
[2025-11-25 00:09:39] apptainer version 1.4.4-1.el9
[2025-11-25 00:09:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:09:40] c7-11-13.aglt2.org
[2025-11-25 00:09:40] apptainer works
[2025-11-25 00:09:40] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:09:40] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:09:40] Starting ATLAS job with PandaID=6895386882
[2025-11-25 00:09:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:04:49]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:04:49] 2025-11-25 21:04:14,734 | INFO     | monitor loop #3747: job 0:6895386882 is in state 'finished'
[2025-11-25 16:04:49] 2025-11-25 21:04:14,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,155 | INFO     | time since job start (57252s) is within the limit (172800.0s)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,640 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 16:04:49] 2025-11-25 21:04:15,644 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.6008437500013
[2025-11-25 16:04:49] 2025-11-25 21:04:15,657 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895386882/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,658 | INFO     | extracted standard info from prmon json
[2025-11-25 16:04:49] 2025-11-25 21:04:15,658 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:04:49] 2025-11-25 21:04:15,658 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:04:49] 2025-11-25 21:04:15,670 | INFO     | fitting pss+swap vs Time
[2025-11-25 16:04:49] 2025-11-25 21:04:15,672 | INFO     | sum of square deviations: 255871534433.93573
[2025-11-25 16:04:49] 2025-11-25 21:04:15,689 | INFO     | sum of deviations: 1807301389139.832
[2025-11-25 16:04:49] 2025-11-25 21:04:15,690 | INFO     | mean x: 1764076038.0469084
[2025-11-25 16:04:49] 2025-11-25 21:04:15,690 | INFO     | mean y: 2882143.8901918977
[2025-11-25 16:04:49] 2025-11-25 21:04:15,690 | INFO     | intersect: -12457343575.097101
[2025-11-25 16:04:49] 2025-11-25 21:04:15,691 | INFO     | chi2: 5.658547903310795
[2025-11-25 16:04:49] 2025-11-25 21:04:15,692 | INFO     | sum of square deviations: 251801665793.8291
[2025-11-25 16:04:49] 2025-11-25 21:04:15,707 | INFO     | sum of deviations: 2086584154932.3513
[2025-11-25 16:04:49] 2025-11-25 21:04:15,708 | INFO     | mean x: 1764075885.5605574
[2025-11-25 16:04:49] 2025-11-25 21:04:15,708 | INFO     | mean y: 2892598.7106109327
[2025-11-25 16:04:49] 2025-11-25 21:04:15,708 | INFO     | intersect: -14615329958.73175
[2025-11-25 16:04:49] 2025-11-25 21:04:15,709 | INFO     | chi2: 2.8219184137604802
[2025-11-25 16:04:49] 2025-11-25 21:04:15,709 | INFO     | current chi2=2.8219184137604802 (change=50.129989849350096 %)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,709 | INFO     | sum of square deviations: 247774852104.72314
[2025-11-25 16:04:49] 2025-11-25 21:04:15,725 | INFO     | sum of deviations: 2082101852921.5696
[2025-11-25 16:04:49] 2025-11-25 21:04:15,726 | INFO     | mean x: 1764075733.067888
[2025-11-25 16:04:49] 2025-11-25 21:04:15,726 | INFO     | mean y: 2892426.324353448
[2025-11-25 16:04:49] 2025-11-25 21:04:15,726 | INFO     | intersect: -14820990309.612957
[2025-11-25 16:04:49] 2025-11-25 21:04:15,727 | INFO     | chi2: 2.787919057761437
[2025-11-25 16:04:49] 2025-11-25 21:04:15,727 | INFO     | current chi2=2.787919057761437 (change=1.2048312890001593 %)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,727 | INFO     | right removable region: 927
[2025-11-25 16:04:49] 2025-11-25 21:04:15,728 | INFO     | sum of square deviations: 251800265481.94818
[2025-11-25 16:04:49] 2025-11-25 21:04:15,744 | INFO     | sum of deviations: 1532063659685.7432
[2025-11-25 16:04:49] 2025-11-25 21:04:15,745 | INFO     | mean x: 1764076190.5594854
[2025-11-25 16:04:49] 2025-11-25 21:04:15,745 | INFO     | mean y: 2892441.887459807
[2025-11-25 16:04:49] 2025-11-25 21:04:15,745 | INFO     | intersect: -10730523661.944279
[2025-11-25 16:04:49] 2025-11-25 21:04:15,746 | INFO     | chi2: 3.154801137676386
[2025-11-25 16:04:49] 2025-11-25 21:04:15,746 | INFO     | current chi2=3.154801137676386 (change=44.24716037429808 %)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,746 | INFO     | sum of square deviations: 247772734678.99036
[2025-11-25 16:04:49] 2025-11-25 21:04:15,763 | INFO     | sum of deviations: 1455225776126.9705
[2025-11-25 16:04:49] 2025-11-25 21:04:15,763 | INFO     | mean x: 1764076343.0657327
[2025-11-25 16:04:49] 2025-11-25 21:04:15,763 | INFO     | mean y: 2895350.738146552
[2025-11-25 16:04:49] 2025-11-25 21:04:15,763 | INFO     | intersect: -10357927315.28676
[2025-11-25 16:04:49] 2025-11-25 21:04:15,764 | INFO     | chi2: 3.0689701524688995
[2025-11-25 16:04:49] 2025-11-25 21:04:15,764 | INFO     | current chi2=3.0689701524688995 (change=2.720646451608156 %)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,764 | INFO     | left removable region: 20
[2025-11-25 16:04:49] 2025-11-25 21:04:15,765 | INFO     | sum of square deviations: 231332793198.74954
[2025-11-25 16:04:49] 2025-11-25 21:04:15,781 | INFO     | sum of deviations: 1621277604216.2893
[2025-11-25 16:04:49] 2025-11-25 21:04:15,781 | INFO     | mean x: 1764076312.5005512
[2025-11-25 16:04:49] 2025-11-25 21:04:15,782 | INFO     | mean y: 2909746.4200661522
[2025-11-25 16:04:49] 2025-11-25 21:04:15,782 | INFO     | intersect: -12360479715.308266
[2025-11-25 16:04:49] 2025-11-25 21:04:15,783 | INFO     | chi2: 0.13368074274593192
[2025-11-25 16:04:49] 2025-11-25 21:04:15,783 | INFO     | current memory leak: 7.01 B/s (using 907 data points, chi2=0.13)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | could have reported an average CPU frequency of 3281 MHz (35 samples)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | ..............................
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . Timing measurements:
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . get job = 0 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . initial setup = 4 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . payload setup = 10 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . stage-in = 0 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . payload execution = 57185 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . stage-out = 3 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | . log creation = 0 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,784 | INFO     | ..............................
[2025-11-25 16:04:49] 2025-11-25 21:04:15,861 | INFO     | 
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | job summary report
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | --------------------------------------------------
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | PanDA job id: 6895386882
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | task id: 47556161
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | errors: (none)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | pilot state: finished 
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | transexitcode: 0
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | exeerrorcode: 0
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | exeerrordiag: 
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | exitcode: 0
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | exitmsg: OK
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | cpuconsumptiontime: 196010 s
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | nevents: 1000
[2025-11-25 16:04:49] 2025-11-25 21:04:15,862 | INFO     | neventsw: 0
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | pid: 4089164
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | pgrp: 4089164
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | corecount: 8
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | event service: False
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | sizes: {0: 2284135, 1: 2284334, 12: 2284624, 23: 2284624, 57200: 2336693, 57205: 2345692, 57207: 2345876, 57218: 2346122}
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | --------------------------------------------------
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | 
[2025-11-25 16:04:49] 2025-11-25 21:04:15,863 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-25 16:04:49] 2025-11-25 21:04:15,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | job 6895386882 has completed (purged errors)
[2025-11-25 16:04:49] 2025-11-25 21:04:15,885 | INFO     | overall cleanup function is called
[2025-11-25 16:04:49] 2025-11-25 21:04:16,904 | INFO     | --- collectZombieJob: --- 10, [4089164]
[2025-11-25 16:04:49] 2025-11-25 21:04:16,904 | INFO     | zombie collector waiting for pid 4089164
[2025-11-25 16:04:49] 2025-11-25 21:04:16,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:04:49] 2025-11-25 21:04:16,904 | INFO     | collected zombie processes
[2025-11-25 16:04:49] 2025-11-25 21:04:16,904 | INFO     | will attempt to kill all subprocesses of pid=4089164
[2025-11-25 16:04:49] 2025-11-25 21:04:17,280 | INFO     | process IDs to be killed: [4089164] (in reverse order)
[2025-11-25 16:04:49] 2025-11-25 21:04:17,426 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:04:49] 2025-11-25 21:04:17,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:04:49] 2025-11-25 21:04:17,443 | INFO     | did not find any defunct processes belonging to 4089164
[2025-11-25 16:04:49] 2025-11-25 21:04:17,459 | INFO     | did not find any defunct processes belonging to 4089164
[2025-11-25 16:04:49] 2025-11-25 21:04:17,460 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:04:49] 2025-11-25 21:04:17,461 | INFO     | ready for new job
[2025-11-25 16:04:49] 2025-11-25 21:04:17,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:04:49] 2025-11-25 21:04:17,465 | INFO     | ***************************************
[2025-11-25 16:04:49] 2025-11-25 21:04:17,465 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:04:49] 2025-11-25 21:04:17,465 | INFO     | ***************************************
[2025-11-25 16:04:49] 2025-11-25 21:04:17,465 | INFO     | 
[2025-11-25 16:04:49] 2025-11-25 21:04:17,468 | INFO     | architecture information:
[2025-11-25 16:04:49] 2025-11-25 21:04:17,469 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:04:49] 2025-11-25 21:04:17,487 | INFO     | cat /etc/os-release:
[2025-11-25 16:04:49] NAME="CentOS Linux"
[2025-11-25 16:04:49] VERSION="7 (Core)"
[2025-11-25 16:04:49] ID="centos"
[2025-11-25 16:04:49] ID_LIKE="rhel fedora"
[2025-11-25 16:04:49] VERSION_ID="7"
[2025-11-25 16:04:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:04:49] ANSI_COLOR="0;31"
[2025-11-25 16:04:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:04:49] HOME_URL="https://www.centos.org/"
[2025-11-25 16:04:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:04:49] 
[2025-11-25 16:04:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:04:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:04:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:04:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:04:49] 
[2025-11-25 16:04:49] 2025-11-25 21:04:17,487 | INFO     | ***************************************
[2025-11-25 16:04:49] 2025-11-25 21:04:17,990 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-25 16:04:49] 2025-11-25 21:04:18,009 | INFO     | sufficient remaining disk space (91458895872 B)
[2025-11-25 16:04:49] 2025-11-25 21:04:18,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:04:49] 2025-11-25 21:04:18,009 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:04:49] 2025-11-25 21:04:18,009 | INFO     | update_server=False
[2025-11-25 16:04:49] 2025-11-25 21:04:18,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:04:49] 2025-11-25 21:04:18,124 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:04:49] 2025-11-25 21:04:18,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:04:49] 2025-11-25 21:04:18,252 | INFO     | aborting loop
[2025-11-25 16:04:49] 2025-11-25 21:04:18,860 | INFO     | all data control threads have been joined
[2025-11-25 16:04:49] 2025-11-25 21:04:19,016 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:19,118 | INFO     | all job control threads have been joined
[2025-11-25 16:04:49] 2025-11-25 21:04:19,258 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:19,275 | INFO     | all payload control threads have been joined
[2025-11-25 16:04:49] 2025-11-25 21:04:19,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:04:49] 2025-11-25 21:04:19,827 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:19,837 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:19,866 | INFO     | [data] control thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:19,962 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:19,973 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,057 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,116 | INFO     | [job] validate thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,119 | INFO     | [job] control thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,134 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,281 | INFO     | [payload] control thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,426 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:20,876 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:04:49] 2025-11-25 21:04:21,883 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:23,609 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:04:49] 2025-11-25 21:04:42,781 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:04:49] 2025-11-25 21:04:43,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547952289600)>', '<ExcThread(monitor, started 140547595413248)>']
[2025-11-25 16:04:49] 2025-11-25 21:04:48,718 | INFO     | all workflow threads have been joined
[2025-11-25 16:04:49] 2025-11-25 21:04:48,727 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:04:49] 2025-11-25 21:04:48,727 | INFO     | traces error code: 0
[2025-11-25 16:04:49] 2025-11-25 21:04:48,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:04:49] 2025-11-25 21:04:48,740 | INFO     | PID=4063213 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 16:04:49] 2025-11-25 21:04:48,740 | INFO     | .. there are 34 such processes running
[2025-11-25 16:04:49] 2025-11-25 21:04:48,741 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:04:49] 2025-11-25 21:04:48,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:04:49] 2025-11-25 21:04:48,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:04:49] 2025-11-25 21:04:48,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:04:49] 2025-11-25 21:04:48,741 | INFO     | [monitor] control thread has ended
[2025-11-25 16:04:49] 2025-11-25 21:04:48,967 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:04:49] 2025-11-25 21:04:48,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:04:49] 2025-11-25 21:04:49,007 [wrapper] pilotpid: 4063213
[2025-11-25 16:04:49] 2025-11-25 21:04:49,017 [wrapper] Pilot exit status: 0
[2025-11-25 16:04:49] 2025-11-25 21:04:49,032 [wrapper] pandaids: 6895386882
[2025-11-25 16:04:49] 2025-11-25 21:04:49,132 [wrapper] cleanup supervisor_pilot 3573746 4063214
[2025-11-25 16:04:49] 2025-11-25 21:04:49,136 [wrapper] Test setup, not cleaning
[2025-11-25 16:04:49] 2025-11-25 21:04:49,185 [wrapper] apfmon messages muted
[2025-11-25 16:04:49] 2025-11-25 21:04:49,233 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:04:49] 2025-11-25 21:04:49,262 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:04:49]  *** Error codes and diagnostics ***
[2025-11-25 16:04:49]     "exeErrorCode": 0,
[2025-11-25 16:04:49]     "exeErrorDiag": "",
[2025-11-25 16:04:49]     "pilotErrorCode": 0,
[2025-11-25 16:04:49]     "pilotErrorDiag": "",
[2025-11-25 16:04:49]  *** Listing of results directory ***
[2025-11-25 16:04:49] total 1318664
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:19 queuedata.json
[2025-11-25 16:04:49] -rwx------. 1 boincer umatlas     36292 Nov 24 01:20 runpilot2-wrapper.sh
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:20 pilot3.tar.gz
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:04:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:09 run_atlas
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:09 job.xml
[2025-11-25 16:04:49] -rw-r--r--. 2 boincer umatlas 410699709 Nov 25 00:09 EVNT.47483658._002024.pool.root.1
[2025-11-25 16:04:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:09 start_atlas.sh
[2025-11-25 16:04:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:09 shared
[2025-11-25 16:04:49] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:09 input.tar.gz
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:09 boinc_lockfile
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:09 pandaJob.out
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas        57 Nov 25 00:09 setup.sh.local
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas    991801 Nov 25 00:10 agis_schedconf.cvmfs.json
[2025-11-25 16:04:49] drwx------. 5 boincer umatlas      4096 Nov 25 00:10 pilot3
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas       533 Nov 25 15:56 boinc_task_state.xml
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas      6905 Nov 25 16:02 init_data.xml
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas 916196356 Nov 25 16:03 HITS.47556161._000080.pool.root.1
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas      1059 Nov 25 16:03 memory_monitor_summary.json
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas        95 Nov 25 16:03 pilot_heartbeat.json
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas   1516240 Nov 25 16:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas   2122338 Nov 25 16:04 log.47556161._000080.job.log.tgz.1
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas      8604 Nov 25 16:04 heartbeat.json
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 16:04 boinc_mmap_file
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas        29 Nov 25 16:04 wrapper_checkpoint.txt
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas       823 Nov 25 16:04 pilotlog.txt
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas   7625170 Nov 25 16:04 log.47556161._000080.job.log.1
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas       353 Nov 25 16:04 output.list
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas       620 Nov 25 16:04 runtime_log
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas   9768960 Nov 25 16:04 result.tar.gz
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 16:04 runtime_log.err
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas       664 Nov 25 16:04 dqOKDmn6eh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeVLKDm8BddTn.diag
[2025-11-25 16:04:49] -rw-r--r--. 1 boincer umatlas     21354 Nov 25 16:04 stderr.txt
[2025-11-25 16:04:49] HITS file was successfully produced:
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas 916196356 Nov 25 16:03 shared/HITS.pool.root.1
[2025-11-25 16:04:49]  *** Contents of shared directory: ***
[2025-11-25 16:04:49] total 1305944
[2025-11-25 16:04:49] -rw-r--r--. 2 boincer umatlas 410699709 Nov 25 00:09 ATLAS.root_0
[2025-11-25 16:04:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:09 start_atlas.sh
[2025-11-25 16:04:49] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:09 input.tar.gz
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas 916196356 Nov 25 16:03 HITS.pool.root.1
[2025-11-25 16:04:49] -rw-------. 1 boincer umatlas   9768960 Nov 25 16:04 result.tar.gz
16:04:51 (4054764): run_atlas exited; CPU time 195760.426835
16:04:51 (4054764): called boinc_finish(0)

</stderr_txt>
]]>

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