Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:18:26 (1503484): wrapper (7.7.26015): starting
00:18:26 (1503484): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:18:26] Arguments: --nthreads 9
[2025-11-25 00:18:26] Threads: 9
[2025-11-25 00:18:26] Checking for CVMFS
[2025-11-25 00:18:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:18:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:18:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:18:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:18:29] 2.13.2.0 7301 34686 235564 153271 0 191 36497911 40960001 34604 16776704 0 219216513 99.679 190455355 35371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:18:29] CVMFS is ok
[2025-11-25 00:18:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:18:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:18:29] Further information can be found at the LHC@home message board.
[2025-11-25 00:18:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:18:29] Checking for apptainer binary...
[2025-11-25 00:18:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:18:29] Running /usr/bin/apptainer --version
[2025-11-25 00:18:30] apptainer version 1.4.4-1.el9
[2025-11-25 00:18:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:18:30] c-212-17.aglt2.org
[2025-11-25 00:18:30] apptainer works
[2025-11-25 00:18:30] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:18:30] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:18:30] Starting ATLAS job with PandaID=6895386879
[2025-11-25 00:18:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:08 (1503484): BOINC client no longer exists - exiting
00:20:08 (1503484): timer handler: client dead, exiting
00:21:04 (1544307): wrapper (7.7.26015): starting
00:21:04 (1544307): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:21:04] Arguments: --nthreads 9
[2025-11-25 00:21:04] Threads: 9
[2025-11-25 00:21:04] This job has been restarted, cleaning up previous attempt
[2025-11-25 00:21:04] Checking for CVMFS
[2025-11-25 00:21:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:21:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:21:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:21:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:21:05] 2.13.2.0 7301 34688 232288 153272 1 168 36519716 40960000 25881 16776704 0 219256921 99.679 190456788 35371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:21:05] CVMFS is ok
[2025-11-25 00:21:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:21:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:21:05] Further information can be found at the LHC@home message board.
[2025-11-25 00:21:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:21:05] Checking for apptainer binary...
[2025-11-25 00:21:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:21:05] Running /usr/bin/apptainer --version
[2025-11-25 00:21:05] apptainer version 1.4.4-1.el9
[2025-11-25 00:21:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:21:05] c-212-17.aglt2.org
[2025-11-25 00:21:05] apptainer works
[2025-11-25 00:21:05] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:21:05] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:21:05] Starting ATLAS job with PandaID=6895386879
[2025-11-25 00:21:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:23:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:23:43] 2025-11-27 02:22:35,682 | INFO     | time since job start (162074s) is within the limit (172800.0s)
[2025-11-26 21:23:43] 2025-11-27 02:22:36,892 | INFO     | monitor loop #9816: job 0:6895386879 is in state 'finished'
[2025-11-26 21:23:43] 2025-11-27 02:22:36,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:23:43] 2025-11-27 02:22:37,689 | INFO     | time since job start (162076s) is within the limit (172800.0s)
[2025-11-26 21:23:43] 2025-11-27 02:22:39,402 | INFO     | monitor loop #9817: job 0:6895386879 is in state 'finished'
[2025-11-26 21:23:43] 2025-11-27 02:22:39,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:23:43] 2025-11-27 02:22:39,698 | INFO     | time since job start (162078s) is within the limit (172800.0s)
[2025-11-26 21:23:43] 2025-11-27 02:22:41,705 | INFO     | time since job start (162080s) is within the limit (172800.0s)
[2025-11-26 21:23:43] 2025-11-27 02:22:41,911 | INFO     | monitor loop #9818: job 0:6895386879 is in state 'finished'
[2025-11-26 21:23:43] 2025-11-27 02:22:41,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:23:43] 2025-11-27 02:22:43,712 | INFO     | time since job start (162082s) is within the limit (172800.0s)
[2025-11-26 21:23:43] 2025-11-27 02:22:44,414 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:23:43] 2025-11-27 02:22:44,422 | INFO     | monitor loop #9819: job 0:6895386879 is in state 'finished'
[2025-11-26 21:23:43] 2025-11-27 02:22:44,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:23:43] 2025-11-27 02:22:44,449 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3138.931052083333
[2025-11-26 21:23:43] 2025-11-27 02:22:44,492 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895386879/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:23:43] 2025-11-27 02:22:44,493 | INFO     | extracted standard info from prmon json
[2025-11-26 21:23:43] 2025-11-27 02:22:44,493 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:23:43] 2025-11-27 02:22:44,493 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:23:43] 2025-11-27 02:22:44,526 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:23:43] 2025-11-27 02:22:44,534 | INFO     | sum of square deviations: 5809464400386.933
[2025-11-26 21:23:43] 2025-11-27 02:22:44,942 | INFO     | sum of deviations: 120811063510745.33
[2025-11-26 21:23:43] 2025-11-27 02:22:44,942 | INFO     | mean x: 1764129100.7447288
[2025-11-26 21:23:43] 2025-11-27 02:22:44,942 | INFO     | mean y: 3637583.9149096385
[2025-11-26 21:23:43] 2025-11-27 02:22:44,942 | INFO     | intersect: -36682414372.44624
[2025-11-26 21:23:43] 2025-11-27 02:22:44,975 | INFO     | chi2: 99.90457211675427
[2025-11-26 21:23:43] 2025-11-27 02:22:44,977 | INFO     | sum of square deviations: 5776716469841.689
[2025-11-26 21:23:43] 2025-11-27 02:22:45,418 | INFO     | sum of deviations: 122016179789319.11
[2025-11-26 21:23:43] 2025-11-27 02:22:45,418 | INFO     | mean x: 1764128948.2489626
[2025-11-26 21:23:43] 2025-11-27 02:22:45,419 | INFO     | mean y: 3643195.39532252
[2025-11-26 21:23:43] 2025-11-27 02:22:45,419 | INFO     | intersect: -37258402820.68461
[2025-11-26 21:23:43] 2025-11-27 02:22:45,420 | INFO     | chi2: 97.14667313365464
[2025-11-26 21:23:43] 2025-11-27 02:22:45,420 | INFO     | current chi2=97.14667313365464 (change=2.7605333015956286 %)
[2025-11-26 21:23:43] 2025-11-27 02:22:45,420 | INFO     | right removable region: 2650
[2025-11-26 21:23:43] 2025-11-27 02:22:45,426 | INFO     | sum of square deviations: 5776712994919.185
[2025-11-26 21:23:43] 2025-11-27 02:22:45,754 | INFO     | time since job start (162084s) is within the limit (172800.0s)
[2025-11-26 21:23:43] 2025-11-27 02:22:46,365 | INFO     | sum of deviations: 119838305562714.56
[2025-11-26 21:23:43] 2025-11-27 02:22:46,365 | INFO     | mean x: 1764129253.2485855
[2025-11-26 21:23:43] 2025-11-27 02:22:46,366 | INFO     | mean y: 3642111.64089023
[2025-11-26 21:23:43] 2025-11-27 02:22:46,366 | INFO     | intersect: -36593339716.75701
[2025-11-26 21:23:43] 2025-11-27 02:22:46,368 | INFO     | chi2: 97.65959766989164
[2025-11-26 21:23:43] 2025-11-27 02:22:46,368 | INFO     | current chi2=97.65959766989164 (change=2.2471188247911424 %)
[2025-11-26 21:23:43] 2025-11-27 02:22:46,388 | INFO     | left removable region: 10
[2025-11-26 21:23:43] 2025-11-27 02:22:46,390 | INFO     | sum of square deviations: 5705100196260.489
[2025-11-26 21:23:43] 2025-11-27 02:22:47,058 | INFO     | monitor loop #9820: job 0:6895386879 is in state 'finished'
[2025-11-26 21:23:43] 2025-11-27 02:22:47,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:23:43] 2025-11-27 02:22:47,318 | INFO     | sum of deviations: 120739123778642.75
[2025-11-26 21:23:43] 2025-11-27 02:22:47,318 | INFO     | mean x: 1764129222.751894
[2025-11-26 21:23:43] 2025-11-27 02:22:47,318 | INFO     | mean y: 3651262.6378787877
[2025-11-26 21:23:43] 2025-11-27 02:22:47,318 | INFO     | intersect: -37331261229.69241
[2025-11-26 21:23:43] 2025-11-27 02:22:47,320 | INFO     | chi2: 94.45114541431708
[2025-11-26 21:23:43] 2025-11-27 02:22:47,320 | INFO     | current memory leak: 21.16 B/s (using 2640 data points, chi2=94.45)
[2025-11-26 21:23:43] 2025-11-27 02:22:47,334 | INFO     | could have reported an average CPU frequency of 3205 MHz (92 samples)
[2025-11-26 21:23:43] 2025-11-27 02:22:47,334 | INFO     | ..............................
[2025-11-26 21:23:43] 2025-11-27 02:22:47,334 | INFO     | . Timing measurements:
[2025-11-26 21:23:43] 2025-11-27 02:22:47,334 | INFO     | . get job = 0 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,334 | INFO     | . initial setup = 1 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,334 | INFO     | . payload setup = 10 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,334 | INFO     | . stage-in = 0 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,335 | INFO     | . payload execution = 162026 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,335 | INFO     | . stage-out = 6 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,335 | INFO     | . log creation = 1 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,335 | INFO     | ..............................
[2025-11-26 21:23:43] 2025-11-27 02:22:47,779 | INFO     | time since job start (162086s) is within the limit (172800.0s)
[2025-11-26 21:23:43] 2025-11-27 02:22:47,880 | INFO     | 
[2025-11-26 21:23:43] 2025-11-27 02:22:47,880 | INFO     | job summary report
[2025-11-26 21:23:43] 2025-11-27 02:22:47,880 | INFO     | --------------------------------------------------
[2025-11-26 21:23:43] 2025-11-27 02:22:47,880 | INFO     | PanDA job id: 6895386879
[2025-11-26 21:23:43] 2025-11-27 02:22:47,880 | INFO     | task id: 47556161
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | errors: (none)
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | pilot state: finished 
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | transexitcode: 0
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | exeerrorcode: 0
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | exeerrordiag: 
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | exitcode: 0
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | exitmsg: OK
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | cpuconsumptiontime: 200575 s
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | nevents: 1000
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | neventsw: 0
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | pid: 1660459
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | pgrp: 1660459
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | corecount: 9
[2025-11-26 21:23:43] 2025-11-27 02:22:47,881 | INFO     | event service: False
[2025-11-26 21:23:43] 2025-11-27 02:22:47,882 | INFO     | sizes: {0: 2284135, 1: 2284334, 8: 2284596, 11: 2284624, 162041: 2383975, 162042: 2383974, 162048: 2393157, 162051: 2393213, 162069: 2393459}
[2025-11-26 21:23:43] 2025-11-27 02:22:47,882 | INFO     | --------------------------------------------------
[2025-11-26 21:23:43] 2025-11-27 02:22:47,882 | INFO     | 
[2025-11-26 21:23:43] 2025-11-27 02:22:47,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 21:23:43] 2025-11-27 02:22:47,998 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:47,999 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | job 6895386879 has completed (purged errors)
[2025-11-26 21:23:43] 2025-11-27 02:22:48,000 | INFO     | overall cleanup function is called
[2025-11-26 21:23:43] 2025-11-27 02:22:49,057 | INFO     | --- collectZombieJob: --- 10, [1660459]
[2025-11-26 21:23:43] 2025-11-27 02:22:49,057 | INFO     | zombie collector waiting for pid 1660459
[2025-11-26 21:23:43] 2025-11-27 02:22:49,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:23:43] 2025-11-27 02:22:49,057 | INFO     | collected zombie processes
[2025-11-26 21:23:43] 2025-11-27 02:22:49,057 | INFO     | will attempt to kill all subprocesses of pid=1660459
[2025-11-26 21:23:43] 2025-11-27 02:22:51,771 | INFO     | process IDs to be killed: [1660459] (in reverse order)
[2025-11-26 21:23:43] 2025-11-27 02:22:52,046 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:23:43] 2025-11-27 02:22:52,047 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:23:43] 2025-11-27 02:22:52,069 | INFO     | did not find any defunct processes belonging to 1660459
[2025-11-26 21:23:43] 2025-11-27 02:22:52,099 | INFO     | did not find any defunct processes belonging to 1660459
[2025-11-26 21:23:43] 2025-11-27 02:22:52,101 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:23:43] 2025-11-27 02:22:52,101 | INFO     | ready for new job
[2025-11-26 21:23:43] 2025-11-27 02:22:52,101 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:23:43] 2025-11-27 02:22:52,112 | INFO     | ***************************************
[2025-11-26 21:23:43] 2025-11-27 02:22:52,113 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:23:43] 2025-11-27 02:22:52,113 | INFO     | ***************************************
[2025-11-26 21:23:43] 2025-11-27 02:22:52,113 | INFO     | 
[2025-11-26 21:23:43] 2025-11-27 02:22:52,122 | INFO     | architecture information:
[2025-11-26 21:23:43] 2025-11-27 02:22:52,123 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:23:43] 2025-11-27 02:22:52,144 | INFO     | cat /etc/os-release:
[2025-11-26 21:23:43] NAME="CentOS Linux"
[2025-11-26 21:23:43] VERSION="7 (Core)"
[2025-11-26 21:23:43] ID="centos"
[2025-11-26 21:23:43] ID_LIKE="rhel fedora"
[2025-11-26 21:23:43] VERSION_ID="7"
[2025-11-26 21:23:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:23:43] ANSI_COLOR="0;31"
[2025-11-26 21:23:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:23:43] HOME_URL="https://www.centos.org/"
[2025-11-26 21:23:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:23:43] 
[2025-11-26 21:23:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:23:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:23:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:23:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:23:43] 
[2025-11-26 21:23:43] 2025-11-27 02:22:52,144 | INFO     | ***************************************
[2025-11-26 21:23:43] 2025-11-27 02:22:52,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 21:23:43] 2025-11-27 02:22:52,686 | INFO     | sufficient remaining disk space (118937878528 B)
[2025-11-26 21:23:43] 2025-11-27 02:22:52,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:23:43] 2025-11-27 02:22:52,686 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:23:43] 2025-11-27 02:22:52,686 | INFO     | update_server=False
[2025-11-26 21:23:43] 2025-11-27 02:22:52,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:23:43] 2025-11-27 02:22:52,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:23:43] 2025-11-27 02:22:52,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:23:43] 2025-11-27 02:22:53,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:23:43] 2025-11-27 02:22:53,123 | INFO     | aborting loop
[2025-11-26 21:23:43] 2025-11-27 02:22:53,540 | INFO     | all payload control threads have been joined
[2025-11-26 21:23:43] 2025-11-27 02:22:53,560 | INFO     | all job control threads have been joined
[2025-11-26 21:23:43] 2025-11-27 02:22:53,691 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:53,743 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:53,752 | INFO     | all data control threads have been joined
[2025-11-26 21:23:43] 2025-11-27 02:22:53,959 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:53,998 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,086 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,128 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,538 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,546 | INFO     | [payload] control thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,566 | INFO     | [job] control thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,615 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:23:43] 2025-11-27 02:22:54,760 | INFO     | [data] control thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,782 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:54,986 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:55,133 | INFO     | [job] validate thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:55,137 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:22:58,715 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:23:43] 2025-11-27 02:23:09,489 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:23:43] 2025-11-27 02:23:11,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755215488832)>', '<ExcThread(monitor, started 139754611930880)>']
[2025-11-26 21:23:43] 2025-11-27 02:23:16,321 | INFO     | all workflow threads have been joined
[2025-11-26 21:23:43] 2025-11-27 02:23:16,321 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:23:43] 2025-11-27 02:23:16,321 | INFO     | traces error code: 0
[2025-11-26 21:23:43] 2025-11-27 02:23:16,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:23:43] 2025-11-27 02:23:21,870 | INFO     | PID=1586208 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:23:43] 2025-11-27 02:23:21,871 | INFO     | .. there are 36 such processes running
[2025-11-26 21:23:43] 2025-11-27 02:23:21,875 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:23:43] 2025-11-27 02:23:21,875 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:23:43] 2025-11-27 02:23:21,875 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:23:43] 2025-11-27 02:23:21,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:23:43] 2025-11-27 02:23:21,875 | INFO     | [monitor] control thread has ended
[2025-11-26 21:23:43] 2025-11-27 02:23:22,679 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:23:43] 2025-11-27 02:23:22,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:23:43] 2025-11-27 02:23:22,689 [wrapper] pilotpid: 1586208
[2025-11-26 21:23:43] 2025-11-27 02:23:22,699 [wrapper] Pilot exit status: 0
[2025-11-26 21:23:43] 2025-11-27 02:23:22,724 [wrapper] pandaids: 6895386879 6895386879
[2025-11-26 21:23:43] 2025-11-27 02:23:22,849 [wrapper] cleanup supervisor_pilot  523236 1586209
[2025-11-26 21:23:43] 2025-11-27 02:23:22,892 [wrapper] Test setup, not cleaning
[2025-11-26 21:23:43] 2025-11-27 02:23:22,914 [wrapper] apfmon messages muted
[2025-11-26 21:23:43] 2025-11-27 02:23:22,917 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:23:43] 2025-11-27 02:23:22,944 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:23:43]  *** Error codes and diagnostics ***
[2025-11-26 21:23:43]     "exeErrorCode": 0,
[2025-11-26 21:23:43]     "exeErrorDiag": "",
[2025-11-26 21:23:43]     "pilotErrorCode": 0,
[2025-11-26 21:23:43]     "pilotErrorDiag": "",
[2025-11-26 21:23:43]  *** Listing of results directory ***
[2025-11-26 21:23:43] total 1745304
[2025-11-26 21:23:43] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:19 queuedata.json
[2025-11-26 21:23:43] -rwx------. 1 boincer umatlas     36292 Nov 24 01:20 runpilot2-wrapper.sh
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:20 pilot3.tar.gz
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:23:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:18 run_atlas
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:18 job.xml
[2025-11-26 21:23:43] -rw-r--r--. 3 boincer umatlas 410699709 Nov 25 00:18 EVNT.47483658._002024.pool.root.1
[2025-11-26 21:23:43] -rw-r--r--. 3 boincer umatlas 410699709 Nov 25 00:18 ATLAS.root_0
[2025-11-26 21:23:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:18 start_atlas.sh
[2025-11-26 21:23:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:18 shared
[2025-11-26 21:23:43] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:18 input.tar.gz
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:18 boinc_lockfile
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:21 pandaJob.out
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas        57 Nov 25 00:21 setup.sh.local
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas    991801 Nov 25 00:21 agis_schedconf.cvmfs.json
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:51 boinc_task_state.xml
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas 914192913 Nov 26 21:20 HITS.47556161._000077.pool.root.1
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 21:21 init_data.xml
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas      1079 Nov 26 21:22 memory_monitor_summary.json
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:22 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas   3436459 Nov 26 21:22 log.47556161._000077.job.log.tgz.1
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas      8642 Nov 26 21:22 heartbeat.json
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas        96 Nov 26 21:23 pilot_heartbeat.json
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas       823 Nov 26 21:23 pilotlog.txt
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas  20400238 Nov 26 21:23 log.47556161._000077.job.log.1
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas       353 Nov 26 21:23 output.list
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:23 runtime_log
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas  23859200 Nov 26 21:23 result.tar.gz
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas       796 Nov 26 21:23 sYJKDmn6eh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbVLKDmBQXGjn.diag
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas      9429 Nov 26 21:23 runtime_log.err
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:23 wrapper_checkpoint.txt
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:23 boinc_mmap_file
[2025-11-26 21:23:43] -rw-r--r--. 1 boincer umatlas     24083 Nov 26 21:23 stderr.txt
[2025-11-26 21:23:43] HITS file was successfully produced:
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas 914192913 Nov 26 21:20 shared/HITS.pool.root.1
[2025-11-26 21:23:43]  *** Contents of shared directory: ***
[2025-11-26 21:23:43] total 1317748
[2025-11-26 21:23:43] -rw-r--r--. 3 boincer umatlas 410699709 Nov 25 00:18 ATLAS.root_0
[2025-11-26 21:23:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:18 start_atlas.sh
[2025-11-26 21:23:43] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:18 input.tar.gz
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas 914192913 Nov 26 21:20 HITS.pool.root.1
[2025-11-26 21:23:43] -rw-------. 1 boincer umatlas  23859200 Nov 26 21:23 result.tar.gz
21:23:45 (1544307): run_atlas exited; CPU time 203947.096460
21:23:45 (1544307): called boinc_finish(0)

</stderr_txt>
]]>

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