Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:59 (25243): wrapper (7.7.26015): starting
00:05:59 (25243): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:06:00] Arguments: --nthreads 12
[2025-11-25 00:06:00] Threads: 12
[2025-11-25 00:06:00] Checking for CVMFS
[2025-11-25 00:06:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:06:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:06:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:06:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:06:00] 2.11.2.0 2979 285813 94540 153270 0 81 14636295 20275200 1 130560 1 127908710 99.975 15970847 13840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:06:00] CVMFS is ok
[2025-11-25 00:06:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:06:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:06:00] Further information can be found at the LHC@home message board.
[2025-11-25 00:06:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:06:00] Checking for apptainer binary...
[2025-11-25 00:06:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:06:00] Running /usr/bin/apptainer --version
[2025-11-25 00:06:00] apptainer version 1.3.2-1.el7
[2025-11-25 00:06:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:06:01] c-205-21.aglt2.org
[2025-11-25 00:06:01] apptainer works
[2025-11-25 00:06:01] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:06:01] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:06:01] Starting ATLAS job with PandaID=6896044237
[2025-11-25 00:06:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:18:21]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:18:21] 2025-11-25 12:17:46,166 | INFO     | time since job start (25889s) is within the limit (172800.0s)
[2025-11-25 07:18:21] 2025-11-25 12:17:46,537 | INFO     | monitor loop #1941: job 0:6896044237 is in state 'finished'
[2025-11-25 07:18:21] 2025-11-25 12:17:46,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,169 | INFO     | time since job start (25891s) is within the limit (172800.0s)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,493 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 07:18:21] 2025-11-25 12:17:48,497 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-11-25 07:18:21] 2025-11-25 12:17:48,499 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896044237/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,500 | INFO     | extracted standard info from prmon json
[2025-11-25 07:18:21] 2025-11-25 12:17:48,500 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 07:18:21] 2025-11-25 12:17:48,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 07:18:21] 2025-11-25 12:17:48,507 | INFO     | fitting pss+swap vs Time
[2025-11-25 07:18:21] 2025-11-25 12:17:48,507 | INFO     | sum of square deviations: 23636146907.318287
[2025-11-25 07:18:21] 2025-11-25 12:17:48,511 | INFO     | sum of deviations: 403709469002.5236
[2025-11-25 07:18:21] 2025-11-25 12:17:48,511 | INFO     | mean x: 1764060106.7099056
[2025-11-25 07:18:21] 2025-11-25 12:17:48,512 | INFO     | mean y: 3420935.5896226414
[2025-11-25 07:18:21] 2025-11-25 12:17:48,512 | INFO     | intersect: -30127030180.69989
[2025-11-25 07:18:21] 2025-11-25 12:17:48,512 | INFO     | chi2: 5.426927115537511
[2025-11-25 07:18:21] 2025-11-25 12:17:48,513 | INFO     | sum of square deviations: 22809814372.09535
[2025-11-25 07:18:21] 2025-11-25 12:17:48,516 | INFO     | sum of deviations: 551110285683.2268
[2025-11-25 07:18:21] 2025-11-25 12:17:48,516 | INFO     | mean x: 1764059954.2124104
[2025-11-25 07:18:21] 2025-11-25 12:17:48,517 | INFO     | mean y: 3448105.3794749402
[2025-11-25 07:18:21] 2025-11-25 12:17:48,517 | INFO     | intersect: -42618187014.88189
[2025-11-25 07:18:21] 2025-11-25 12:17:48,517 | INFO     | chi2: 2.8324199150458322
[2025-11-25 07:18:21] 2025-11-25 12:17:48,517 | INFO     | current chi2=2.8324199150458322 (change=47.80803473596504 %)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,518 | INFO     | sum of square deviations: 22002945258.794617
[2025-11-25 07:18:21] 2025-11-25 12:17:48,522 | INFO     | sum of deviations: 594782263451.8768
[2025-11-25 07:18:21] 2025-11-25 12:17:48,522 | INFO     | mean x: 1764059801.7125604
[2025-11-25 07:18:21] 2025-11-25 12:17:48,522 | INFO     | mean y: 3456307.427536232
[2025-11-25 07:18:21] 2025-11-25 12:17:48,522 | INFO     | intersect: -47682499794.63957
[2025-11-25 07:18:21] 2025-11-25 12:17:48,522 | INFO     | chi2: 2.3323373854737808
[2025-11-25 07:18:21] 2025-11-25 12:17:48,523 | INFO     | current chi2=2.3323373854737808 (change=17.655663516401997 %)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,523 | INFO     | right removable region: 413
[2025-11-25 07:18:21] 2025-11-25 12:17:48,523 | INFO     | sum of square deviations: 22809760082.095364
[2025-11-25 07:18:21] 2025-11-25 12:17:48,527 | INFO     | sum of deviations: 274179185623.58005
[2025-11-25 07:18:21] 2025-11-25 12:17:48,527 | INFO     | mean x: 1764060259.2124104
[2025-11-25 07:18:21] 2025-11-25 12:17:48,527 | INFO     | mean y: 3444757.4653937947
[2025-11-25 07:18:21] 2025-11-25 12:17:48,527 | INFO     | intersect: -21201013488.52196
[2025-11-25 07:18:21] 2025-11-25 12:17:48,528 | INFO     | chi2: 3.33073699531444
[2025-11-25 07:18:21] 2025-11-25 12:17:48,528 | INFO     | current chi2=3.33073699531444 (change=38.62572825460644 %)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,528 | INFO     | sum of square deviations: 22002887552.794617
[2025-11-25 07:18:21] 2025-11-25 12:17:48,532 | INFO     | sum of deviations: 232202624956.45233
[2025-11-25 07:18:21] 2025-11-25 12:17:48,532 | INFO     | mean x: 1764060411.7125604
[2025-11-25 07:18:21] 2025-11-25 12:17:48,532 | INFO     | mean y: 3452684.4323671497
[2025-11-25 07:18:21] 2025-11-25 12:17:48,532 | INFO     | intersect: -18613170120.122677
[2025-11-25 07:18:21] 2025-11-25 12:17:48,533 | INFO     | chi2: 3.226488013636107
[2025-11-25 07:18:21] 2025-11-25 12:17:48,533 | INFO     | current chi2=3.226488013636107 (change=3.129907339576395 %)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,533 | INFO     | left removable region: 20
[2025-11-25 07:18:21] 2025-11-25 12:17:48,533 | INFO     | sum of square deviations: 18821653278.04577
[2025-11-25 07:18:21] 2025-11-25 12:17:48,537 | INFO     | sum of deviations: 364028438997.37427
[2025-11-25 07:18:21] 2025-11-25 12:17:48,537 | INFO     | mean x: 1764060381.2137403
[2025-11-25 07:18:21] 2025-11-25 12:17:48,537 | INFO     | mean y: 3500944.078880407
[2025-11-25 07:18:21] 2025-11-25 12:17:48,537 | INFO     | intersect: -34115082444.09766
[2025-11-25 07:18:21] 2025-11-25 12:17:48,538 | INFO     | chi2: 0.06322424447801589
[2025-11-25 07:18:21] 2025-11-25 12:17:48,538 | INFO     | current memory leak: 19.34 B/s (using 393 data points, chi2=0.06)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,538 | INFO     | could have reported an average CPU frequency of 2439 MHz (18 samples)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,538 | INFO     | ..............................
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . Timing measurements:
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . get job = 0 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . initial setup = 2 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . payload setup = 7 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . stage-in = 0 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . payload execution = 25853 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . stage-out = 3 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | . log creation = 0 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,539 | INFO     | ..............................
[2025-11-25 07:18:21] 2025-11-25 12:17:48,620 | INFO     | 
[2025-11-25 07:18:21] 2025-11-25 12:17:48,621 | INFO     | job summary report
[2025-11-25 07:18:21] 2025-11-25 12:17:48,621 | INFO     | --------------------------------------------------
[2025-11-25 07:18:21] 2025-11-25 12:17:48,621 | INFO     | PanDA job id: 6896044237
[2025-11-25 07:18:21] 2025-11-25 12:17:48,621 | INFO     | task id: 47556173
[2025-11-25 07:18:21] 2025-11-25 12:17:48,621 | INFO     | errors: (none)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,621 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 07:18:21] 2025-11-25 12:17:48,622 | INFO     | pilot state: finished 
[2025-11-25 07:18:21] 2025-11-25 12:17:48,622 | INFO     | transexitcode: 0
[2025-11-25 07:18:21] 2025-11-25 12:17:48,622 | INFO     | exeerrorcode: 0
[2025-11-25 07:18:21] 2025-11-25 12:17:48,622 | INFO     | exeerrordiag: 
[2025-11-25 07:18:21] 2025-11-25 12:17:48,622 | INFO     | exitcode: 0
[2025-11-25 07:18:21] 2025-11-25 12:17:48,622 | INFO     | exitmsg: OK
[2025-11-25 07:18:21] 2025-11-25 12:17:48,623 | INFO     | cpuconsumptiontime: 296623 s
[2025-11-25 07:18:21] 2025-11-25 12:17:48,623 | INFO     | nevents: 1000
[2025-11-25 07:18:21] 2025-11-25 12:17:48,623 | INFO     | neventsw: 0
[2025-11-25 07:18:21] 2025-11-25 12:17:48,623 | INFO     | pid: 3084
[2025-11-25 07:18:21] 2025-11-25 12:17:48,623 | INFO     | pgrp: 3084
[2025-11-25 07:18:21] 2025-11-25 12:17:48,623 | INFO     | corecount: 12
[2025-11-25 07:18:21] 2025-11-25 12:17:48,624 | INFO     | event service: False
[2025-11-25 07:18:21] 2025-11-25 12:17:48,624 | INFO     | sizes: {0: 2284134, 1: 2284333, 6: 2284595, 12: 2284623, 25864: 2321914, 25865: 2321913, 25868: 2331152, 25876: 2331342}
[2025-11-25 07:18:21] 2025-11-25 12:17:48,624 | INFO     | --------------------------------------------------
[2025-11-25 07:18:21] 2025-11-25 12:17:48,624 | INFO     | 
[2025-11-25 07:18:21] 2025-11-25 12:17:48,624 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 07:18:21] 2025-11-25 12:17:48,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,652 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,652 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,652 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,652 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,653 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,654 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,655 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 07:18:21] 2025-11-25 12:17:48,655 | INFO     | job 6896044237 has completed (purged errors)
[2025-11-25 07:18:21] 2025-11-25 12:17:48,655 | INFO     | overall cleanup function is called
[2025-11-25 07:18:21] 2025-11-25 12:17:49,672 | INFO     | --- collectZombieJob: --- 10, [3084]
[2025-11-25 07:18:21] 2025-11-25 12:17:49,673 | INFO     | zombie collector waiting for pid 3084
[2025-11-25 07:18:21] 2025-11-25 12:17:49,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 07:18:21] 2025-11-25 12:17:49,673 | INFO     | collected zombie processes
[2025-11-25 07:18:21] 2025-11-25 12:17:49,673 | INFO     | will attempt to kill all subprocesses of pid=3084
[2025-11-25 07:18:21] 2025-11-25 12:17:49,764 | INFO     | process IDs to be killed: [3084] (in reverse order)
[2025-11-25 07:18:21] 2025-11-25 12:17:49,815 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 07:18:21] 2025-11-25 12:17:49,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 07:18:21] 2025-11-25 12:17:49,819 | INFO     | did not find any defunct processes belonging to 3084
[2025-11-25 07:18:21] 2025-11-25 12:17:49,822 | INFO     | did not find any defunct processes belonging to 3084
[2025-11-25 07:18:21] 2025-11-25 12:17:49,824 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:18:21] 2025-11-25 12:17:49,824 | INFO     | ready for new job
[2025-11-25 07:18:21] 2025-11-25 12:17:49,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:18:21] 2025-11-25 12:17:49,826 | INFO     | ***************************************
[2025-11-25 07:18:21] 2025-11-25 12:17:49,826 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:18:21] 2025-11-25 12:17:49,826 | INFO     | ***************************************
[2025-11-25 07:18:21] 2025-11-25 12:17:49,826 | INFO     | 
[2025-11-25 07:18:21] 2025-11-25 12:17:49,827 | INFO     | architecture information:
[2025-11-25 07:18:21] 2025-11-25 12:17:49,828 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:18:21] 2025-11-25 12:17:49,844 | INFO     | cat /etc/os-release:
[2025-11-25 07:18:21] NAME="CentOS Linux"
[2025-11-25 07:18:21] VERSION="7 (Core)"
[2025-11-25 07:18:21] ID="centos"
[2025-11-25 07:18:21] ID_LIKE="rhel fedora"
[2025-11-25 07:18:21] VERSION_ID="7"
[2025-11-25 07:18:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:18:21] ANSI_COLOR="0;31"
[2025-11-25 07:18:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:18:21] HOME_URL="https://www.centos.org/"
[2025-11-25 07:18:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:18:21] 
[2025-11-25 07:18:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:18:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:18:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:18:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:18:21] 
[2025-11-25 07:18:21] 2025-11-25 12:17:49,844 | INFO     | ***************************************
[2025-11-25 07:18:21] 2025-11-25 12:17:50,347 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 07:18:21] 2025-11-25 12:17:50,364 | INFO     | sufficient remaining disk space (28252831744 B)
[2025-11-25 07:18:21] 2025-11-25 12:17:50,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:18:21] 2025-11-25 12:17:50,364 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:18:21] 2025-11-25 12:17:50,365 | INFO     | update_server=False
[2025-11-25 07:18:21] 2025-11-25 12:17:50,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:18:21] 2025-11-25 12:17:50,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:18:21] 2025-11-25 12:17:50,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:18:21] 2025-11-25 12:17:50,366 | INFO     | aborting loop
[2025-11-25 07:18:21] 2025-11-25 12:17:50,474 | INFO     | all payload control threads have been joined
[2025-11-25 07:18:21] 2025-11-25 12:17:51,067 | INFO     | all data control threads have been joined
[2025-11-25 07:18:21] 2025-11-25 12:17:51,370 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:51,371 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:51,371 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:51,480 | INFO     | [payload] control thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:51,480 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:51,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:18:21] 2025-11-25 12:17:51,586 | INFO     | all job control threads have been joined
[2025-11-25 07:18:21] 2025-11-25 12:17:51,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:18:21] 2025-11-25 12:17:51,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,072 | INFO     | [data] control thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,168 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,478 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,493 | INFO     | [job] validate thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,519 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,589 | INFO     | [job] control thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,633 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:52,968 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:53,529 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:55,606 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:18:21] 2025-11-25 12:17:58,705 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:18:21] 2025-11-25 12:18:00,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771571410752)>', '<ExcThread(monitor, started 139770902599424)>']
[2025-11-25 07:18:21] 2025-11-25 12:18:05,507 | INFO     | all workflow threads have been joined
[2025-11-25 07:18:21] 2025-11-25 12:18:05,507 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:18:21] 2025-11-25 12:18:05,507 | INFO     | traces error code: 0
[2025-11-25 07:18:21] 2025-11-25 12:18:05,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:18:21] 2025-11-25 12:18:21,375 | INFO     | PID=28996 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 07:18:21] 2025-11-25 12:18:21,376 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:18:21] 2025-11-25 12:18:21,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:18:21] 2025-11-25 12:18:21,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:18:21] 2025-11-25 12:18:21,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:18:21] 2025-11-25 12:18:21,376 | INFO     | [monitor] control thread has ended
[2025-11-25 07:18:21] 2025-11-25 12:18:21,473 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:18:21] 2025-11-25 12:18:21,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:18:21] 2025-11-25 12:18:21,480 [wrapper] pilotpid: 28996
[2025-11-25 07:18:21] 2025-11-25 12:18:21,484 [wrapper] Pilot exit status: 0
[2025-11-25 07:18:21] 2025-11-25 12:18:21,497 [wrapper] pandaids: 6896044237
[2025-11-25 07:18:21] 2025-11-25 12:18:21,538 [wrapper] cleanup supervisor_pilot 21304 28997
[2025-11-25 07:18:21] 2025-11-25 12:18:21,542 [wrapper] Test setup, not cleaning
[2025-11-25 07:18:21] 2025-11-25 12:18:21,546 [wrapper] apfmon messages muted
[2025-11-25 07:18:21] 2025-11-25 12:18:21,550 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:18:21] 2025-11-25 12:18:21,554 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:18:21]  *** Error codes and diagnostics ***
[2025-11-25 07:18:21]     "exeErrorCode": 0,
[2025-11-25 07:18:21]     "exeErrorDiag": "",
[2025-11-25 07:18:21]     "pilotErrorCode": 0,
[2025-11-25 07:18:21]     "pilotErrorDiag": "",
[2025-11-25 07:18:21]  *** Listing of results directory ***
[2025-11-25 07:18:21] total 1300524
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 12:57 queuedata.json
[2025-11-25 07:18:21] -rwx------ 1 boincer umatlas     36292 Nov 24 13:00 runpilot2-wrapper.sh
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:18:21] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-25 07:18:21] -rw-r--r-- 2 boincer umatlas 409913594 Nov 25 00:05 EVNT.47483658._003024.pool.root.1
[2025-11-25 07:18:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-25 07:18:21] drwxrwx--x 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-25 07:18:21] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 00:05 input.tar.gz
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas      2783 Nov 25 00:06 pandaJob.out
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas        57 Nov 25 00:06 setup.sh.local
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas    991801 Nov 25 00:06 agis_schedconf.cvmfs.json
[2025-11-25 07:18:21] drwx------ 5 boincer umatlas      4096 Nov 25 00:06 pilot3
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas       532 Nov 25 07:08 boinc_task_state.xml
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas      5956 Nov 25 07:10 init_data.xml
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas 906234408 Nov 25 07:17 HITS.47556173._000069.pool.root.1
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas        95 Nov 25 07:17 pilot_heartbeat.json
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas      1064 Nov 25 07:17 memory_monitor_summary.json
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas   1516240 Nov 25 07:17 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas   2192493 Nov 25 07:17 log.47556173._000069.job.log.tgz.1
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas      8676 Nov 25 07:17 heartbeat.json
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 07:17 boinc_mmap_file
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas        29 Nov 25 07:17 wrapper_checkpoint.txt
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas       745 Nov 25 07:18 pilotlog.txt
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas   3641264 Nov 25 07:18 log.47556173._000069.job.log.1
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas       353 Nov 25 07:18 output.list
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas       620 Nov 25 07:18 runtime_log
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas   5857280 Nov 25 07:18 result.tar.gz
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas      9345 Nov 25 07:18 runtime_log.err
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas       670 Nov 25 07:18 NM5NDmE2ph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgpLKDmKUQN5n.diag
[2025-11-25 07:18:21] -rw-r--r-- 1 boincer umatlas     21328 Nov 25 07:18 stderr.txt
[2025-11-25 07:18:21] HITS file was successfully produced:
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas 906234408 Nov 25 07:17 shared/HITS.pool.root.1
[2025-11-25 07:18:21]  *** Contents of shared directory: ***
[2025-11-25 07:18:21] total 1291628
[2025-11-25 07:18:21] -rw-r--r-- 2 boincer umatlas 409913594 Nov 25 00:05 ATLAS.root_0
[2025-11-25 07:18:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-25 07:18:21] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 00:05 input.tar.gz
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas 906234408 Nov 25 07:17 HITS.pool.root.1
[2025-11-25 07:18:21] -rw------- 1 boincer umatlas   5857280 Nov 25 07:18 result.tar.gz
07:18:23 (25243): run_atlas exited; CPU time 289735.894090
07:18:23 (25243): called boinc_finish(0)

</stderr_txt>
]]>

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