Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:38 (2699633): wrapper (7.7.26015): starting
00:05:38 (2699633): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:05:38] Arguments: --nthreads 12
[2025-11-25 00:05:38] Threads: 12
[2025-11-25 00:05:38] Checking for CVMFS
[2025-11-25 00:05:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:41] 2.13.3.0 12468 28170 359188 153270 1 435 26538701 32947200 32547 16776704 0 110063653 99.419 159490870 33871 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:05:41] CVMFS is ok
[2025-11-25 00:05:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:41] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:41] Checking for apptainer binary...
[2025-11-25 00:05:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:41] Running /usr/bin/apptainer --version
[2025-11-25 00:05:41] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:41] c6-6-8-1.aglt2.org
[2025-11-25 00:05:41] apptainer works
[2025-11-25 00:05:41] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:05:41] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:05:42] Starting ATLAS job with PandaID=6896044231
[2025-11-25 00:05:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:00:09 (2699633): BOINC client no longer exists - exiting
11:00:09 (2699633): timer handler: client dead, exiting
11:12:22 (561807): wrapper (7.7.26015): starting
11:12:22 (561807): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 11:12:22] Arguments: --nthreads 8
[2025-11-25 11:12:22] Threads: 8
[2025-11-25 11:12:22] This job has been restarted, cleaning up previous attempt
[2025-11-25 11:12:22] Checking for CVMFS
[2025-11-25 11:12:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:12:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:12:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:12:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:12:22] 2.13.3.0 12468 28837 367436 153287 0 371 29475494 32947200 29744 16776704 0 112068734 99.426 160171585 33851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 11:12:22] CVMFS is ok
[2025-11-25 11:12:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:12:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:12:22] Further information can be found at the LHC@home message board.
[2025-11-25 11:12:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:12:22] Checking for apptainer binary...
[2025-11-25 11:12:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:12:22] Running /usr/bin/apptainer --version
[2025-11-25 11:12:22] apptainer version 1.4.4-1.el9
[2025-11-25 11:12:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:12:23] c6-6-8-1.aglt2.org
[2025-11-25 11:12:23] apptainer works
[2025-11-25 11:12:23] Set ATHENA_PROC_NUMBER=8
[2025-11-25 11:12:23] Set ATHENA_CORE_NUMBER=8
[2025-11-25 11:12:23] Starting ATLAS job with PandaID=6896044231
[2025-11-25 11:12:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:43:49]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:43:50] 2025-11-26 09:43:01,718 | INFO     | monitor loop #3634: job 0:6896044231 is in state 'finished'
[2025-11-26 04:43:50] 2025-11-26 09:43:01,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:43:50] 2025-11-26 09:43:03,074 | INFO     | time since job start (63024s) is within the limit (172800.0s)
[2025-11-26 04:43:50] 2025-11-26 09:43:04,241 | INFO     | monitor loop #3635: job 0:6896044231 is in state 'finished'
[2025-11-26 04:43:50] 2025-11-26 09:43:04,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:43:50] 2025-11-26 09:43:05,569 | INFO     | PID=580588 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 04:43:50] 2025-11-26 09:43:05,570 | INFO     | .. there are 42 such processes running
[2025-11-26 04:43:50] 2025-11-26 09:43:06,590 | INFO     | time since job start (63027s) is within the limit (172800.0s)
[2025-11-26 04:43:50] 2025-11-26 09:43:06,771 | INFO     | monitor loop #3636: job 0:6896044231 is in state 'finished'
[2025-11-26 04:43:50] 2025-11-26 09:43:06,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:43:50] 2025-11-26 09:43:08,599 | INFO     | time since job start (63029s) is within the limit (172800.0s)
[2025-11-26 04:43:50] 2025-11-26 09:43:09,298 | INFO     | monitor loop #3637: job 0:6896044231 is in state 'finished'
[2025-11-26 04:43:50] 2025-11-26 09:43:09,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:43:50] 2025-11-26 09:43:10,627 | INFO     | time since job start (63031s) is within the limit (172800.0s)
[2025-11-26 04:43:50] 2025-11-26 09:43:11,345 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 04:43:50] 2025-11-26 09:43:11,435 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2671.6936041666663
[2025-11-26 04:43:50] 2025-11-26 09:43:11,552 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896044231/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:43:50] 2025-11-26 09:43:11,582 | INFO     | extracted standard info from prmon json
[2025-11-26 04:43:50] 2025-11-26 09:43:11,582 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:43:50] 2025-11-26 09:43:11,583 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:43:50] 2025-11-26 09:43:11,701 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:43:50] 2025-11-26 09:43:11,774 | INFO     | sum of square deviations: 340827118854.0468
[2025-11-26 04:43:50] 2025-11-26 09:43:11,900 | INFO     | monitor loop #3638: job 0:6896044231 is in state 'finished'
[2025-11-26 04:43:50] 2025-11-26 09:43:11,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:43:50] 2025-11-26 09:43:11,919 | INFO     | sum of deviations: 1240265150795.5193
[2025-11-26 04:43:50] 2025-11-26 09:43:11,919 | INFO     | mean x: 1764118646.6162791
[2025-11-26 04:43:50] 2025-11-26 09:43:11,919 | INFO     | mean y: 2888819.016472868
[2025-11-26 04:43:50] 2025-11-26 09:43:11,919 | INFO     | intersect: -6416714429.17367
[2025-11-26 04:43:50] 2025-11-26 09:43:11,921 | INFO     | chi2: 21.335381786195246
[2025-11-26 04:43:50] 2025-11-26 09:43:11,926 | INFO     | sum of square deviations: 335898055311.544
[2025-11-26 04:43:50] 2025-11-26 09:43:12,041 | INFO     | sum of deviations: 1640673463831.3428
[2025-11-26 04:43:50] 2025-11-26 09:43:12,041 | INFO     | mean x: 1764118494.1265824
[2025-11-26 04:43:50] 2025-11-26 09:43:12,041 | INFO     | mean y: 2901203.9435248296
[2025-11-26 04:43:50] 2025-11-26 09:43:12,041 | INFO     | intersect: -8613827457.028038
[2025-11-26 04:43:50] 2025-11-26 09:43:12,058 | INFO     | chi2: 16.84688702347518
[2025-11-26 04:43:50] 2025-11-26 09:43:12,059 | INFO     | current chi2=16.84688702347518 (change=21.037799124945973 %)
[2025-11-26 04:43:50] 2025-11-26 09:43:12,059 | INFO     | right removable region: 1026
[2025-11-26 04:43:50] 2025-11-26 09:43:12,060 | INFO     | sum of square deviations: 335896973904.5406
[2025-11-26 04:43:50] 2025-11-26 09:43:12,177 | INFO     | sum of deviations: 943136355112.4288
[2025-11-26 04:43:50] 2025-11-26 09:43:12,177 | INFO     | mean x: 1764118799.1226873
[2025-11-26 04:43:50] 2025-11-26 09:43:12,177 | INFO     | mean y: 2897999.758519961
[2025-11-26 04:43:50] 2025-11-26 09:43:12,177 | INFO     | intersect: -4950420140.769673
[2025-11-26 04:43:50] 2025-11-26 09:43:12,179 | INFO     | chi2: 19.045760062450263
[2025-11-26 04:43:50] 2025-11-26 09:43:12,179 | INFO     | current chi2=19.045760062450263 (change=10.731571371394205 %)
[2025-11-26 04:43:50] 2025-11-26 09:43:12,179 | INFO     | left removable region: 10
[2025-11-26 04:43:50] 2025-11-26 09:43:12,195 | INFO     | sum of square deviations: 325219954590.43256
[2025-11-26 04:43:50] 2025-11-26 09:43:12,286 | INFO     | sum of deviations: 1315019428682.61
[2025-11-26 04:43:50] 2025-11-26 09:43:12,308 | INFO     | mean x: 1764118768.6387796
[2025-11-26 04:43:50] 2025-11-26 09:43:12,308 | INFO     | mean y: 2915348.715551181
[2025-11-26 04:43:50] 2025-11-26 09:43:12,308 | INFO     | intersect: -7130258438.806661
[2025-11-26 04:43:50] 2025-11-26 09:43:12,309 | INFO     | chi2: 13.855755828232045
[2025-11-26 04:43:50] 2025-11-26 09:43:12,310 | INFO     | current memory leak: 4.04 B/s (using 1016 data points, chi2=13.86)
[2025-11-26 04:43:50] 2025-11-26 09:43:12,311 | INFO     | could have reported an average CPU frequency of 2655 MHz (38 samples)
[2025-11-26 04:43:50] 2025-11-26 09:43:12,368 | INFO     | ..............................
[2025-11-26 04:43:50] 2025-11-26 09:43:12,368 | INFO     | . Timing measurements:
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | . get job = 0 s
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | . initial setup = 2 s
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | . payload setup = 10 s
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | . stage-in = 0 s
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | . payload execution = 62955 s
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | . stage-out = 8 s
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | . log creation = 1 s
[2025-11-26 04:43:50] 2025-11-26 09:43:12,369 | INFO     | ..............................
[2025-11-26 04:43:50] 2025-11-26 09:43:12,665 | INFO     | time since job start (63033s) is within the limit (172800.0s)
[2025-11-26 04:43:50] 2025-11-26 09:43:13,001 | INFO     | 
[2025-11-26 04:43:50] 2025-11-26 09:43:13,001 | INFO     | job summary report
[2025-11-26 04:43:50] 2025-11-26 09:43:13,001 | INFO     | --------------------------------------------------
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | PanDA job id: 6896044231
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | task id: 47556173
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | errors: (none)
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | pilot state: finished 
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | transexitcode: 0
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | exeerrorcode: 0
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | exeerrordiag: 
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | exitcode: 0
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | exitmsg: OK
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | cpuconsumptiontime: 264985 s
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | nevents: 1000
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | neventsw: 0
[2025-11-26 04:43:50] 2025-11-26 09:43:13,002 | INFO     | pid: 614551
[2025-11-26 04:43:50] 2025-11-26 09:43:13,003 | INFO     | pgrp: 614551
[2025-11-26 04:43:50] 2025-11-26 09:43:13,003 | INFO     | corecount: 8
[2025-11-26 04:43:50] 2025-11-26 09:43:13,003 | INFO     | event service: False
[2025-11-26 04:43:50] 2025-11-26 09:43:13,003 | INFO     | sizes: {0: 2284089, 1: 2284288, 7: 2284550, 12: 2284578, 62968: 2337961, 62977: 2346955, 62978: 2347139, 63016: 2347385}
[2025-11-26 04:43:50] 2025-11-26 09:43:13,003 | INFO     | --------------------------------------------------
[2025-11-26 04:43:50] 2025-11-26 09:43:13,003 | INFO     | 
[2025-11-26 04:43:50] 2025-11-26 09:43:13,003 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 04:43:50] 2025-11-26 09:43:13,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,162 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:43:50] 2025-11-26 09:43:13,163 | INFO     | job 6896044231 has completed (purged errors)
[2025-11-26 04:43:50] 2025-11-26 09:43:13,164 | INFO     | overall cleanup function is called
[2025-11-26 04:43:50] 2025-11-26 09:43:14,234 | INFO     | --- collectZombieJob: --- 10, [614551]
[2025-11-26 04:43:50] 2025-11-26 09:43:14,234 | INFO     | zombie collector waiting for pid 614551
[2025-11-26 04:43:50] 2025-11-26 09:43:14,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:43:50] 2025-11-26 09:43:14,235 | INFO     | collected zombie processes
[2025-11-26 04:43:50] 2025-11-26 09:43:14,235 | INFO     | will attempt to kill all subprocesses of pid=614551
[2025-11-26 04:43:50] 2025-11-26 09:43:16,856 | INFO     | process IDs to be killed: [614551] (in reverse order)
[2025-11-26 04:43:50] 2025-11-26 09:43:17,352 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:43:50] 2025-11-26 09:43:17,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:43:50] 2025-11-26 09:43:17,391 | INFO     | did not find any defunct processes belonging to 614551
[2025-11-26 04:43:50] 2025-11-26 09:43:17,426 | INFO     | did not find any defunct processes belonging to 614551
[2025-11-26 04:43:50] 2025-11-26 09:43:17,430 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:43:50] 2025-11-26 09:43:17,431 | INFO     | ready for new job
[2025-11-26 04:43:50] 2025-11-26 09:43:17,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:43:50] 2025-11-26 09:43:17,439 | INFO     | ***************************************
[2025-11-26 04:43:50] 2025-11-26 09:43:17,440 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:43:50] 2025-11-26 09:43:17,440 | INFO     | ***************************************
[2025-11-26 04:43:50] 2025-11-26 09:43:17,440 | INFO     | 
[2025-11-26 04:43:50] 2025-11-26 09:43:17,449 | INFO     | architecture information:
[2025-11-26 04:43:50] 2025-11-26 09:43:17,453 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:43:50] 2025-11-26 09:43:17,509 | INFO     | cat /etc/os-release:
[2025-11-26 04:43:50] NAME="CentOS Linux"
[2025-11-26 04:43:50] VERSION="7 (Core)"
[2025-11-26 04:43:50] ID="centos"
[2025-11-26 04:43:50] ID_LIKE="rhel fedora"
[2025-11-26 04:43:50] VERSION_ID="7"
[2025-11-26 04:43:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:43:50] ANSI_COLOR="0;31"
[2025-11-26 04:43:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:43:50] HOME_URL="https://www.centos.org/"
[2025-11-26 04:43:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:43:50] 
[2025-11-26 04:43:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:43:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:43:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:43:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:43:50] 
[2025-11-26 04:43:50] 2025-11-26 09:43:17,510 | INFO     | ***************************************
[2025-11-26 04:43:50] 2025-11-26 09:43:18,013 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 04:43:50] 2025-11-26 09:43:18,063 | INFO     | sufficient remaining disk space (66019393536 B)
[2025-11-26 04:43:50] 2025-11-26 09:43:18,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:43:50] 2025-11-26 09:43:18,063 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:43:50] 2025-11-26 09:43:18,063 | INFO     | update_server=False
[2025-11-26 04:43:50] 2025-11-26 09:43:18,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:43:50] 2025-11-26 09:43:18,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:43:50] 2025-11-26 09:43:18,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:43:50] 2025-11-26 09:43:18,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:43:50] 2025-11-26 09:43:18,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:43:50] 2025-11-26 09:43:18,068 | INFO     | aborting loop
[2025-11-26 04:43:50] 2025-11-26 09:43:18,291 | INFO     | all data control threads have been joined
[2025-11-26 04:43:50] 2025-11-26 09:43:18,587 | INFO     | all payload control threads have been joined
[2025-11-26 04:43:50] 2025-11-26 09:43:19,069 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,070 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,074 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,095 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,242 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,242 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,302 | INFO     | [data] control thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,518 | INFO     | all job control threads have been joined
[2025-11-26 04:43:50] 2025-11-26 09:43:19,593 | INFO     | [payload] control thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,750 | INFO     | [job] validate thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:19,869 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:20,092 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:20,186 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:20,187 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:20,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:20,524 | INFO     | [job] control thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:22,107 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:43:50] 2025-11-26 09:43:31,852 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:43:50] 2025-11-26 09:43:33,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704488953664)>', '<ExcThread(monitor, started 140703816455936)>']
[2025-11-26 04:43:50] 2025-11-26 09:43:38,978 | INFO     | all workflow threads have been joined
[2025-11-26 04:43:50] 2025-11-26 09:43:38,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:43:50] 2025-11-26 09:43:38,979 | INFO     | traces error code: 0
[2025-11-26 04:43:50] 2025-11-26 09:43:38,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:43:50] 2025-11-26 09:43:47,999 | INFO     | PID=580588 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 04:43:50] 2025-11-26 09:43:48,004 | INFO     | .. there are 42 such processes running
[2025-11-26 04:43:50] 2025-11-26 09:43:48,005 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:43:50] 2025-11-26 09:43:48,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:43:50] 2025-11-26 09:43:48,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:43:50] 2025-11-26 09:43:48,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:43:50] 2025-11-26 09:43:48,005 | INFO     | [monitor] control thread has ended
[2025-11-26 04:43:50] 2025-11-26 09:43:48,803 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:43:50] 2025-11-26 09:43:48,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:43:50] 2025-11-26 09:43:48,848 [wrapper] pilotpid: 580588
[2025-11-26 04:43:50] 2025-11-26 09:43:48,879 [wrapper] Pilot exit status: 0
[2025-11-26 04:43:50] 2025-11-26 09:43:48,996 [wrapper] pandaids: 6896044231 6896044231
[2025-11-26 04:43:50] 2025-11-26 09:43:49,312 [wrapper] cleanup supervisor_pilot   44231 580590
[2025-11-26 04:43:50] 2025-11-26 09:43:49,348 [wrapper] Test setup, not cleaning
[2025-11-26 04:43:50] 2025-11-26 09:43:49,362 [wrapper] apfmon messages muted
[2025-11-26 04:43:50] 2025-11-26 09:43:49,381 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:43:50] 2025-11-26 09:43:49,397 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:43:50]  *** Error codes and diagnostics ***
[2025-11-26 04:43:50]     "exeErrorCode": 0,
[2025-11-26 04:43:50]     "exeErrorDiag": "",
[2025-11-26 04:43:50]     "pilotErrorCode": 0,
[2025-11-26 04:43:50]     "pilotErrorDiag": "",
[2025-11-26 04:43:50]  *** Listing of results directory ***
[2025-11-26 04:43:50] total 1723336
[2025-11-26 04:43:50] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 12:57 queuedata.json
[2025-11-26 04:43:50] -rwx------ 1 boincer umatlas     36292 Nov 24 12:58 runpilot2-wrapper.sh
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:43:50] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-26 04:43:50] -rw-r--r-- 3 boincer umatlas 409913594 Nov 25 00:05 EVNT.47483658._003024.pool.root.1
[2025-11-26 04:43:50] -rw-r--r-- 3 boincer umatlas 409913594 Nov 25 00:05 ATLAS.root_0
[2025-11-26 04:43:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 04:43:50] drwxrwx--x 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-26 04:43:50] -rw-r--r-- 2 boincer umatlas    590100 Nov 25 00:05 input.tar.gz
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas      2783 Nov 25 11:12 pandaJob.out
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas        57 Nov 25 11:12 setup.sh.local
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas    991909 Nov 25 11:12 agis_schedconf.cvmfs.json
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas       533 Nov 26 03:57 boinc_task_state.xml
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas      6877 Nov 26 04:38 init_data.xml
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas 921098723 Nov 26 04:38 HITS.47556173._000063.pool.root.1
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas      1070 Nov 26 04:42 memory_monitor_summary.json
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas   1516240 Nov 26 04:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas   2154537 Nov 26 04:42 log.47556173._000063.job.log.tgz.1
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas      8635 Nov 26 04:43 heartbeat.json
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 04:43 boinc_mmap_file
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas        29 Nov 26 04:43 wrapper_checkpoint.txt
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas        96 Nov 26 04:43 pilot_heartbeat.json
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas       822 Nov 26 04:43 pilotlog.txt
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas   7764934 Nov 26 04:43 log.47556173._000063.job.log.1
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas       353 Nov 26 04:43 output.list
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas       620 Nov 26 04:43 runtime_log
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas   9943040 Nov 26 04:43 result.tar.gz
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 04:43 runtime_log.err
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas       789 Nov 26 04:43 qosKDm60ph8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmN9IKDmfyxWPn.diag
[2025-11-26 04:43:50] -rw-r--r-- 1 boincer umatlas     24129 Nov 26 04:43 stderr.txt
[2025-11-26 04:43:50] HITS file was successfully produced:
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas 921098723 Nov 26 04:38 shared/HITS.pool.root.1
[2025-11-26 04:43:50]  *** Contents of shared directory: ***
[2025-11-26 04:43:50] total 1310136
[2025-11-26 04:43:50] -rw-r--r-- 3 boincer umatlas 409913594 Nov 25 00:05 ATLAS.root_0
[2025-11-26 04:43:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 04:43:50] -rw-r--r-- 2 boincer umatlas    590100 Nov 25 00:05 input.tar.gz
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas 921098723 Nov 26 04:38 HITS.pool.root.1
[2025-11-26 04:43:50] -rw------- 1 boincer umatlas   9943040 Nov 26 04:43 result.tar.gz
04:43:51 (561807): run_atlas exited; CPU time 267479.419907
04:43:51 (561807): called boinc_finish(0)

</stderr_txt>
]]>

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