Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:59:07 (278711): wrapper (7.7.26015): starting
10:59:07 (278711): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 10:59:07] Arguments: --nthreads 8
[2025-11-25 10:59:07] Threads: 8
[2025-11-25 10:59:07] Checking for CVMFS
[2025-11-25 10:59:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:59:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:59:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:59:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:59:30] 2.13.3.0 15551 27119 265972 153287 1 546 25261469 32935937 30641 16776704 0 48495500 99.584 53713408 38392 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 10:59:30] CVMFS is ok
[2025-11-25 10:59:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:59:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:59:30] Further information can be found at the LHC@home message board.
[2025-11-25 10:59:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:59:30] Checking for apptainer binary...
[2025-11-25 10:59:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:59:30] Running /usr/bin/apptainer --version
[2025-11-25 10:59:30] apptainer version 1.4.4-1.el9
[2025-11-25 10:59:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:59:30] c6-5-7-3.aglt2.org
[2025-11-25 10:59:30] apptainer works
[2025-11-25 10:59:31] Set ATHENA_PROC_NUMBER=8
[2025-11-25 10:59:31] Set ATHENA_CORE_NUMBER=8
[2025-11-25 10:59:31] Starting ATLAS job with PandaID=6895386971
[2025-11-25 10:59:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:17:34]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:17:35] 2025-11-26 10:16:41,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:17:35] 2025-11-26 10:16:43,091 | INFO     | time since job start (65773s) is within the limit (172800.0s)
[2025-11-26 05:17:35] 2025-11-26 10:16:44,357 | INFO     | monitor loop #4241: job 0:6895386971 is in state 'finished'
[2025-11-26 05:17:35] 2025-11-26 10:16:44,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:17:35] 2025-11-26 10:16:44,746 | INFO     | PID=284858 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:17:35] 2025-11-26 10:16:44,746 | INFO     | .. there are 40 such processes running
[2025-11-26 05:17:35] 2025-11-26 10:16:45,747 | INFO     | time since job start (65775s) is within the limit (172800.0s)
[2025-11-26 05:17:35] 2025-11-26 10:16:46,862 | INFO     | monitor loop #4242: job 0:6895386971 is in state 'finished'
[2025-11-26 05:17:35] 2025-11-26 10:16:46,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:17:35] 2025-11-26 10:16:47,777 | INFO     | time since job start (65777s) is within the limit (172800.0s)
[2025-11-26 05:17:35] 2025-11-26 10:16:49,375 | INFO     | monitor loop #4243: job 0:6895386971 is in state 'finished'
[2025-11-26 05:17:35] 2025-11-26 10:16:49,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:17:35] 2025-11-26 10:16:49,789 | INFO     | time since job start (65779s) is within the limit (172800.0s)
[2025-11-26 05:17:35] 2025-11-26 10:16:51,799 | INFO     | time since job start (65781s) is within the limit (172800.0s)
[2025-11-26 05:17:35] 2025-11-26 10:16:51,906 | INFO     | monitor loop #4244: job 0:6895386971 is in state 'finished'
[2025-11-26 05:17:35] 2025-11-26 10:16:51,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:17:35] 2025-11-26 10:16:53,806 | INFO     | time since job start (65783s) is within the limit (172800.0s)
[2025-11-26 05:17:35] 2025-11-26 10:16:54,267 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 05:17:35] 2025-11-26 10:16:54,279 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3175.8326071428573
[2025-11-26 05:17:35] 2025-11-26 10:16:54,296 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895386971/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:17:35] 2025-11-26 10:16:54,302 | INFO     | extracted standard info from prmon json
[2025-11-26 05:17:35] 2025-11-26 10:16:54,302 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:17:35] 2025-11-26 10:16:54,303 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:17:35] 2025-11-26 10:16:54,317 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:17:35] 2025-11-26 10:16:54,319 | INFO     | sum of square deviations: 386298973824.55054
[2025-11-26 05:17:35] 2025-11-26 10:16:54,338 | INFO     | sum of deviations: 2846763825618.0723
[2025-11-26 05:17:35] 2025-11-26 10:16:54,338 | INFO     | mean x: 1764119346.479554
[2025-11-26 05:17:35] 2025-11-26 10:16:54,338 | INFO     | mean y: 2870095.730483271
[2025-11-26 05:17:35] 2025-11-26 10:16:54,338 | INFO     | intersect: -12997503914.871721
[2025-11-26 05:17:35] 2025-11-26 10:16:54,339 | INFO     | chi2: 15.917548960912596
[2025-11-26 05:17:35] 2025-11-26 10:16:54,340 | INFO     | sum of square deviations: 380939176184.73395
[2025-11-26 05:17:35] 2025-11-26 10:16:54,359 | INFO     | sum of deviations: 3220695468286.335
[2025-11-26 05:17:35] 2025-11-26 10:16:54,360 | INFO     | mean x: 1764119193.984127
[2025-11-26 05:17:35] 2025-11-26 10:16:54,360 | INFO     | mean y: 2880731.6078431373
[2025-11-26 05:17:35] 2025-11-26 10:16:54,360 | INFO     | intersect: -14912074328.898512
[2025-11-26 05:17:35] 2025-11-26 10:16:54,361 | INFO     | chi2: 12.377927154866466
[2025-11-26 05:17:35] 2025-11-26 10:16:54,361 | INFO     | current chi2=12.377927154866466 (change=22.237228952385102 %)
[2025-11-26 05:17:35] 2025-11-26 10:16:54,361 | INFO     | right removable region: 1070
[2025-11-26 05:17:35] 2025-11-26 10:16:54,362 | INFO     | sum of square deviations: 380938533244.7342
[2025-11-26 05:17:35] 2025-11-26 10:16:54,381 | INFO     | sum of deviations: 2440255496957.9526
[2025-11-26 05:17:35] 2025-11-26 10:16:54,381 | INFO     | mean x: 1764119498.984127
[2025-11-26 05:17:35] 2025-11-26 10:16:54,381 | INFO     | mean y: 2881657.4089635853
[2025-11-26 05:17:35] 2025-11-26 10:16:54,381 | INFO     | intersect: -11297897678.350798
[2025-11-26 05:17:35] 2025-11-26 10:16:54,383 | INFO     | chi2: 12.278389698499453
[2025-11-26 05:17:35] 2025-11-26 10:16:54,383 | INFO     | current chi2=12.278389698499453 (change=22.86256050695697 %)
[2025-11-26 05:17:35] 2025-11-26 10:16:54,383 | INFO     | left removable region: 10
[2025-11-26 05:17:35] 2025-11-26 10:16:54,384 | INFO     | sum of square deviations: 369321356452.9658
[2025-11-26 05:17:35] 2025-11-26 10:16:54,402 | INFO     | sum of deviations: 2582980196614.898
[2025-11-26 05:17:35] 2025-11-26 10:16:54,403 | INFO     | mean x: 1764119468.4943397
[2025-11-26 05:17:35] 2025-11-26 10:16:54,403 | INFO     | mean y: 2904238.566981132
[2025-11-26 05:17:35] 2025-11-26 10:16:54,403 | INFO     | intersect: -12335092392.191053
[2025-11-26 05:17:35] 2025-11-26 10:16:54,404 | INFO     | chi2: 5.567621252546482
[2025-11-26 05:17:35] 2025-11-26 10:16:54,404 | INFO     | current memory leak: 6.99 B/s (using 1060 data points, chi2=5.57)
[2025-11-26 05:17:35] 2025-11-26 10:16:54,405 | INFO     | could have reported an average CPU frequency of 3082 MHz (39 samples)
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | ..............................
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . Timing measurements:
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . get job = 0 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . initial setup = 4 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . payload setup = 41 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . stage-in = 0 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . payload execution = 65639 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . stage-out = 6 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | . log creation = 1 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,406 | INFO     | ..............................
[2025-11-26 05:17:35] 2025-11-26 10:16:54,936 | INFO     | 
[2025-11-26 05:17:35] 2025-11-26 10:16:54,936 | INFO     | job summary report
[2025-11-26 05:17:35] 2025-11-26 10:16:54,936 | INFO     | --------------------------------------------------
[2025-11-26 05:17:35] 2025-11-26 10:16:54,936 | INFO     | PanDA job id: 6895386971
[2025-11-26 05:17:35] 2025-11-26 10:16:54,936 | INFO     | task id: 47556149
[2025-11-26 05:17:35] 2025-11-26 10:16:54,936 | INFO     | errors: (none)
[2025-11-26 05:17:35] 2025-11-26 10:16:54,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:17:35] 2025-11-26 10:16:54,937 | INFO     | pilot state: finished 
[2025-11-26 05:17:35] 2025-11-26 10:16:54,937 | INFO     | transexitcode: 0
[2025-11-26 05:17:35] 2025-11-26 10:16:54,937 | INFO     | exeerrorcode: 0
[2025-11-26 05:17:35] 2025-11-26 10:16:54,937 | INFO     | exeerrordiag: 
[2025-11-26 05:17:35] 2025-11-26 10:16:54,937 | INFO     | exitcode: 0
[2025-11-26 05:17:35] 2025-11-26 10:16:54,937 | INFO     | exitmsg: OK
[2025-11-26 05:17:35] 2025-11-26 10:16:54,961 | INFO     | cpuconsumptiontime: 236858 s
[2025-11-26 05:17:35] 2025-11-26 10:16:54,961 | INFO     | nevents: 1000
[2025-11-26 05:17:35] 2025-11-26 10:16:54,961 | INFO     | neventsw: 0
[2025-11-26 05:17:35] 2025-11-26 10:16:54,961 | INFO     | pid: 292844
[2025-11-26 05:17:35] 2025-11-26 10:16:54,961 | INFO     | pgrp: 292844
[2025-11-26 05:17:35] 2025-11-26 10:16:54,961 | INFO     | corecount: 8
[2025-11-26 05:17:35] 2025-11-26 10:16:54,962 | INFO     | event service: False
[2025-11-26 05:17:35] 2025-11-26 10:16:54,962 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 29: 2284689, 34: 2284845, 65685: 2341073, 65694: 2350067, 65697: 2350123, 65724: 2350369}
[2025-11-26 05:17:35] 2025-11-26 10:16:54,962 | INFO     | --------------------------------------------------
[2025-11-26 05:17:35] 2025-11-26 10:16:54,962 | INFO     | 
[2025-11-26 05:17:35] 2025-11-26 10:16:54,962 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 05:17:35] 2025-11-26 10:16:55,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,034 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:17:35] 2025-11-26 10:16:55,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:17:35] 2025-11-26 10:16:55,035 | INFO     | job 6895386971 has completed (purged errors)
[2025-11-26 05:17:35] 2025-11-26 10:16:55,035 | INFO     | overall cleanup function is called
[2025-11-26 05:17:35] 2025-11-26 10:16:56,096 | INFO     | --- collectZombieJob: --- 10, [292844]
[2025-11-26 05:17:35] 2025-11-26 10:16:56,096 | INFO     | zombie collector waiting for pid 292844
[2025-11-26 05:17:35] 2025-11-26 10:16:56,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:17:35] 2025-11-26 10:16:56,096 | INFO     | collected zombie processes
[2025-11-26 05:17:35] 2025-11-26 10:16:56,096 | INFO     | will attempt to kill all subprocesses of pid=292844
[2025-11-26 05:17:35] 2025-11-26 10:16:57,141 | INFO     | process IDs to be killed: [292844] (in reverse order)
[2025-11-26 05:17:35] 2025-11-26 10:16:57,607 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:17:35] 2025-11-26 10:16:57,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:17:35] 2025-11-26 10:16:57,622 | INFO     | did not find any defunct processes belonging to 292844
[2025-11-26 05:17:35] 2025-11-26 10:16:57,637 | INFO     | did not find any defunct processes belonging to 292844
[2025-11-26 05:17:35] 2025-11-26 10:16:57,638 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:17:35] 2025-11-26 10:16:57,638 | INFO     | ready for new job
[2025-11-26 05:17:35] 2025-11-26 10:16:57,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:17:35] 2025-11-26 10:16:57,642 | INFO     | ***************************************
[2025-11-26 05:17:35] 2025-11-26 10:16:57,643 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:17:35] 2025-11-26 10:16:57,643 | INFO     | ***************************************
[2025-11-26 05:17:35] 2025-11-26 10:16:57,643 | INFO     | 
[2025-11-26 05:17:35] 2025-11-26 10:16:57,646 | INFO     | architecture information:
[2025-11-26 05:17:35] 2025-11-26 10:16:57,650 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:17:35] 2025-11-26 10:16:57,697 | INFO     | cat /etc/os-release:
[2025-11-26 05:17:35] NAME="CentOS Linux"
[2025-11-26 05:17:35] VERSION="7 (Core)"
[2025-11-26 05:17:35] ID="centos"
[2025-11-26 05:17:35] ID_LIKE="rhel fedora"
[2025-11-26 05:17:35] VERSION_ID="7"
[2025-11-26 05:17:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:17:35] ANSI_COLOR="0;31"
[2025-11-26 05:17:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:17:35] HOME_URL="https://www.centos.org/"
[2025-11-26 05:17:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:17:35] 
[2025-11-26 05:17:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:17:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:17:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:17:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:17:35] 
[2025-11-26 05:17:35] 2025-11-26 10:16:57,697 | INFO     | ***************************************
[2025-11-26 05:17:35] 2025-11-26 10:16:58,201 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 05:17:35] 2025-11-26 10:16:58,291 | INFO     | sufficient remaining disk space (69893881856 B)
[2025-11-26 05:17:35] 2025-11-26 10:16:58,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:17:35] 2025-11-26 10:16:58,292 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:17:35] 2025-11-26 10:16:58,292 | INFO     | update_server=False
[2025-11-26 05:17:35] 2025-11-26 10:16:58,292 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:17:35] 2025-11-26 10:16:58,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:17:35] 2025-11-26 10:16:58,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:17:35] 2025-11-26 10:16:58,292 | INFO     | aborting loop
[2025-11-26 05:17:35] 2025-11-26 10:16:58,392 | INFO     | all job control threads have been joined
[2025-11-26 05:17:35] 2025-11-26 10:16:58,452 | INFO     | all data control threads have been joined
[2025-11-26 05:17:35] 2025-11-26 10:16:59,298 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,298 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,369 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,412 | INFO     | [job] control thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,458 | INFO     | [data] control thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:17:35] 2025-11-26 10:16:59,598 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,792 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,793 | INFO     | all payload control threads have been joined
[2025-11-26 05:17:35] 2025-11-26 10:16:59,798 | INFO     | [job] validate thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:16:59,806 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:00,091 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:00,299 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:00,366 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:17:35] 2025-11-26 10:17:00,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:00,455 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:00,543 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:00,799 | INFO     | [payload] control thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:04,384 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:17:35] 2025-11-26 10:17:26,133 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:17:35] 2025-11-26 10:17:27,809 | INFO     | PID=284858 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:17:35] 2025-11-26 10:17:27,809 | INFO     | .. there are 40 such processes running
[2025-11-26 05:17:35] 2025-11-26 10:17:27,809 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:17:35] 2025-11-26 10:17:27,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:17:35] 2025-11-26 10:17:27,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:17:35] 2025-11-26 10:17:28,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139696782812992)>', '<ExcThread(monitor, started 139696151717632)>']
[2025-11-26 05:17:35] 2025-11-26 10:17:28,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:17:35] 2025-11-26 10:17:28,815 | INFO     | [monitor] control thread has ended
[2025-11-26 05:17:35] 2025-11-26 10:17:33,124 | INFO     | all workflow threads have been joined
[2025-11-26 05:17:35] 2025-11-26 10:17:33,124 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:17:35] 2025-11-26 10:17:33,124 | INFO     | traces error code: 0
[2025-11-26 05:17:35] 2025-11-26 10:17:33,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:17:35] 2025-11-26 10:17:33,688 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:17:35] 2025-11-26 10:17:33,748 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:17:35] 2025-11-26 10:17:33,768 [wrapper] pilotpid: 284858
[2025-11-26 05:17:35] 2025-11-26 10:17:33,790 [wrapper] Pilot exit status: 0
[2025-11-26 05:17:35] 2025-11-26 10:17:33,905 [wrapper] pandaids: 6895386971
[2025-11-26 05:17:35] 2025-11-26 10:17:34,391 [wrapper] cleanup supervisor_pilot 3789808 284859
[2025-11-26 05:17:35] 2025-11-26 10:17:34,402 [wrapper] Test setup, not cleaning
[2025-11-26 05:17:35] 2025-11-26 10:17:34,417 [wrapper] apfmon messages muted
[2025-11-26 05:17:35] 2025-11-26 10:17:34,436 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:17:35] 2025-11-26 10:17:34,454 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:17:35]  *** Error codes and diagnostics ***
[2025-11-26 05:17:35]     "exeErrorCode": 0,
[2025-11-26 05:17:35]     "exeErrorDiag": "",
[2025-11-26 05:17:35]     "pilotErrorCode": 0,
[2025-11-26 05:17:35]     "pilotErrorDiag": "",
[2025-11-26 05:17:35]  *** Listing of results directory ***
[2025-11-26 05:17:35] total 1319776
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:19 queuedata.json
[2025-11-26 05:17:35] -rwx------. 1 boincer umatlas     36292 Nov 24 01:20 runpilot2-wrapper.sh
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:20 pilot3.tar.gz
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas       100 Nov 25 10:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:17:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 10:59 run_atlas
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas       105 Nov 25 10:59 job.xml
[2025-11-26 05:17:35] -rw-r--r--. 2 boincer umatlas 408206275 Nov 25 10:59 EVNT.47483658._001256.pool.root.1
[2025-11-26 05:17:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:59 start_atlas.sh
[2025-11-26 05:17:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 10:59 shared
[2025-11-26 05:17:35] -rw-r--r--. 2 boincer umatlas    590096 Nov 25 10:59 input.tar.gz
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas         0 Nov 25 10:59 boinc_lockfile
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 10:59 pandaJob.out
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas        57 Nov 25 10:59 setup.sh.local
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas    991909 Nov 25 11:00 agis_schedconf.cvmfs.json
[2025-11-26 05:17:35] drwx------. 5 boincer umatlas      4096 Nov 25 11:00 pilot3
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas       533 Nov 26 04:48 boinc_task_state.xml
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 05:12 init_data.xml
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas 917507094 Nov 26 05:14 HITS.47556149._002422.pool.root.1
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas      1058 Nov 26 05:16 memory_monitor_summary.json
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas   1516240 Nov 26 05:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas   2223723 Nov 26 05:16 log.47556149._002422.job.log.tgz.1
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas        95 Nov 26 05:16 pilot_heartbeat.json
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas      8631 Nov 26 05:16 heartbeat.json
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas      4823 Nov 26 05:17 pilotlog.txt
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 05:17 boinc_mmap_file
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas        29 Nov 26 05:17 wrapper_checkpoint.txt
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas   8686724 Nov 26 05:17 log.47556149._002422.job.log.1
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas       353 Nov 26 05:17 output.list
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas       620 Nov 26 05:17 runtime_log
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas  10926080 Nov 26 05:17 result.tar.gz
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 05:17 runtime_log.err
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas       660 Nov 26 05:17 dHEODmm6eh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTVLKDmLg68bn.diag
[2025-11-26 05:17:35] -rw-r--r--. 1 boincer umatlas     21885 Nov 26 05:17 stderr.txt
[2025-11-26 05:17:35] HITS file was successfully produced:
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas 917507094 Nov 26 05:14 shared/HITS.pool.root.1
[2025-11-26 05:17:35]  *** Contents of shared directory: ***
[2025-11-26 05:17:35] total 1305920
[2025-11-26 05:17:35] -rw-r--r--. 2 boincer umatlas 408206275 Nov 25 10:59 ATLAS.root_0
[2025-11-26 05:17:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:59 start_atlas.sh
[2025-11-26 05:17:35] -rw-r--r--. 2 boincer umatlas    590096 Nov 25 10:59 input.tar.gz
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas 917507094 Nov 26 05:14 HITS.pool.root.1
[2025-11-26 05:17:35] -rw-------. 1 boincer umatlas  10926080 Nov 26 05:17 result.tar.gz
05:17:36 (278711): run_atlas exited; CPU time 238343.426635
05:17:36 (278711): called boinc_finish(0)

</stderr_txt>
]]>

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