Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:33 (313632): wrapper (7.7.26015): starting
00:05:33 (313632): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:05:33] Arguments: --nthreads 8
[2025-11-25 00:05:33] Threads: 8
[2025-11-25 00:05:33] Checking for CVMFS
[2025-11-25 00:05:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:34] 2.13.3.0 12531 28165 440332 153270 2 346 30249396 40960000 25944 16776704 0 140968550 99.692 129480930 39857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:05:34] CVMFS is ok
[2025-11-25 00:05:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:34] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:34] Checking for apptainer binary...
[2025-11-25 00:05:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:34] Running /usr/bin/apptainer --version
[2025-11-25 00:05:34] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:34] c7-13-33.aglt2.org
[2025-11-25 00:05:34] apptainer works
[2025-11-25 00:05:34] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:05:34] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:05:34] Starting ATLAS job with PandaID=6896044168
[2025-11-25 00:05:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:22:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:22:18] 2025-11-26 08:30:16,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:22:18] 2025-11-26 08:30:16,960 | INFO     | time since job start (98647s) is within the limit (172800.0s)
[2025-11-26 05:22:18] 2025-11-26 08:30:18,656 | INFO     | monitor loop #6034: job 0:6896044168 is in state 'finished'
[2025-11-26 05:22:18] 2025-11-26 08:30:18,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:22:18] 2025-11-26 08:30:18,967 | INFO     | time since job start (98649s) is within the limit (172800.0s)
[2025-11-26 05:22:18] 2025-11-26 08:30:20,974 | INFO     | time since job start (98651s) is within the limit (172800.0s)
[2025-11-26 05:22:18] 2025-11-26 08:30:21,161 | INFO     | monitor loop #6035: job 0:6896044168 is in state 'finished'
[2025-11-26 05:22:18] 2025-11-26 08:30:21,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:22:18] 2025-11-26 08:30:22,981 | INFO     | time since job start (98653s) is within the limit (172800.0s)
[2025-11-26 05:22:18] 2025-11-26 08:30:23,666 | INFO     | monitor loop #6036: job 0:6896044168 is in state 'finished'
[2025-11-26 05:22:18] 2025-11-26 08:30:23,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:22:18] 2025-11-26 08:30:24,553 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 05:22:18] 2025-11-26 08:30:24,568 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.845421875001
[2025-11-26 05:22:18] 2025-11-26 08:30:24,738 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6896044168/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:22:18] 2025-11-26 08:30:24,739 | INFO     | extracted standard info from prmon json
[2025-11-26 05:22:18] 2025-11-26 08:30:24,739 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:22:18] 2025-11-26 08:30:24,739 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:22:18] 2025-11-26 08:30:24,963 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:22:18] 2025-11-26 08:30:24,997 | INFO     | sum of square deviations: 1308527090240.5525
[2025-11-26 05:22:18] 2025-11-26 08:30:25,690 | INFO     | sum of deviations: 7654992750793.936
[2025-11-26 05:22:18] 2025-11-26 08:30:25,732 | INFO     | mean x: 1764096521.1522276
[2025-11-26 05:22:18] 2025-11-26 08:30:25,732 | INFO     | mean y: 2878860.8254950494
[2025-11-26 05:22:18] 2025-11-26 08:30:25,732 | INFO     | intersect: -10317233104.635284
[2025-11-26 05:22:18] 2025-11-26 08:30:25,733 | INFO     | chi2: 21.93341051866391
[2025-11-26 05:22:18] 2025-11-26 08:30:25,758 | INFO     | sum of square deviations: 1296418914746.861
[2025-11-26 05:22:18] 2025-11-26 08:30:26,171 | INFO     | sum of deviations: 8240605741548.42
[2025-11-26 05:22:18] 2025-11-26 08:30:26,171 | INFO     | mean x: 1764096368.6573558
[2025-11-26 05:22:18] 2025-11-26 08:30:26,171 | INFO     | mean y: 2886234.7616387336
[2025-11-26 05:22:18] 2025-11-26 08:30:26,171 | INFO     | intersect: -11210481989.691538
[2025-11-26 05:22:18] 2025-11-26 08:30:26,173 | INFO     | chi2: 18.346686922659803
[2025-11-26 05:22:18] 2025-11-26 08:30:26,173 | INFO     | current chi2=18.346686922659803 (change=16.352785595983978 %)
[2025-11-26 05:22:18] 2025-11-26 08:30:26,173 | INFO     | right removable region: 1610
[2025-11-26 05:22:18] 2025-11-26 08:30:26,236 | INFO     | sum of square deviations: 1296417286046.8604
[2025-11-26 05:22:18] 2025-11-26 08:30:26,270 | INFO     | monitor loop #6037: job 0:6896044168 is in state 'finished'
[2025-11-26 05:22:18] 2025-11-26 08:30:26,270 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:22:18] 2025-11-26 08:30:26,861 | INFO     | sum of deviations: 7035513003522.201
[2025-11-26 05:22:18] 2025-11-26 08:30:26,862 | INFO     | mean x: 1764096673.6573558
[2025-11-26 05:22:18] 2025-11-26 08:30:26,862 | INFO     | mean y: 2886661.0800744877
[2025-11-26 05:22:18] 2025-11-26 08:30:26,862 | INFO     | intersect: -9570670572.819666
[2025-11-26 05:22:18] 2025-11-26 08:30:26,863 | INFO     | chi2: 18.04819616592522
[2025-11-26 05:22:18] 2025-11-26 08:30:26,863 | INFO     | current chi2=18.04819616592522 (change=17.713680913566197 %)
[2025-11-26 05:22:18] 2025-11-26 08:30:26,903 | INFO     | left removable region: 10
[2025-11-26 05:22:18] 2025-11-26 08:30:26,905 | INFO     | sum of square deviations: 1270041103176.4375
[2025-11-26 05:22:18] 2025-11-26 08:30:27,612 | INFO     | sum of deviations: 7132166607577.603
[2025-11-26 05:22:18] 2025-11-26 08:30:27,612 | INFO     | mean x: 1764096643.16875
[2025-11-26 05:22:18] 2025-11-26 08:30:27,612 | INFO     | mean y: 2903242.51625
[2025-11-26 05:22:18] 2025-11-26 08:30:27,612 | INFO     | intersect: -9903729810.130707
[2025-11-26 05:22:18] 2025-11-26 08:30:27,656 | INFO     | chi2: 10.091617318046264
[2025-11-26 05:22:18] 2025-11-26 08:30:27,656 | INFO     | current memory leak: 5.62 B/s (using 1600 data points, chi2=10.09)
[2025-11-26 05:22:18] 2025-11-26 08:30:27,657 | INFO     | could have reported an average CPU frequency of 3287 MHz (57 samples)
[2025-11-26 05:22:18] 2025-11-26 08:30:27,657 | INFO     | ..............................
[2025-11-26 05:22:18] 2025-11-26 08:30:27,657 | INFO     | . Timing measurements:
[2025-11-26 05:22:18] 2025-11-26 08:30:27,657 | INFO     | . get job = 0 s
[2025-11-26 05:22:18] 2025-11-26 08:30:27,657 | INFO     | . initial setup = 3 s
[2025-11-26 05:22:18] 2025-11-26 08:30:27,657 | INFO     | . payload setup = 23 s
[2025-11-26 05:22:18] 2025-11-26 08:30:27,658 | INFO     | . stage-in = 0 s
[2025-11-26 05:22:18] 2025-11-26 08:30:27,658 | INFO     | . payload execution = 98541 s
[2025-11-26 05:22:18] 2025-11-26 08:30:27,658 | INFO     | . stage-out = 8 s
[2025-11-26 05:22:18] 2025-11-26 08:30:27,658 | INFO     | . log creation = 3 s
[2025-11-26 05:22:18] 2025-11-26 08:30:27,658 | INFO     | ..............................
[2025-11-26 05:22:18] 2025-11-26 08:30:28,092 | INFO     | 
[2025-11-26 05:22:18] 2025-11-26 08:30:28,092 | INFO     | job summary report
[2025-11-26 05:22:18] 2025-11-26 08:30:28,092 | INFO     | --------------------------------------------------
[2025-11-26 05:22:18] 2025-11-26 08:30:28,092 | INFO     | PanDA job id: 6896044168
[2025-11-26 05:22:18] 2025-11-26 08:30:28,092 | INFO     | task id: 47556185
[2025-11-26 05:22:18] 2025-11-26 08:30:28,092 | INFO     | errors: (none)
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | pilot state: finished 
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | transexitcode: 0
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | exeerrorcode: 0
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | exeerrordiag: 
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | exitcode: 0
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | exitmsg: OK
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | cpuconsumptiontime: 204546 s
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | nevents: 1000
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | neventsw: 0
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | pid: 364363
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | pgrp: 364363
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | corecount: 8
[2025-11-26 05:22:18] 2025-11-26 08:30:28,093 | INFO     | event service: False
[2025-11-26 05:22:18] 2025-11-26 08:30:28,094 | INFO     | sizes: {0: 2283478, 1: 2284334, 12: 2284334, 14: 2284624, 23: 2284652, 98570: 2355440, 98580: 2364439, 98584: 2364495, 98609: 2364741}
[2025-11-26 05:22:18] 2025-11-26 08:30:28,094 | INFO     | --------------------------------------------------
[2025-11-26 05:22:18] 2025-11-26 08:30:28,094 | INFO     | 
[2025-11-26 05:22:18] 2025-11-26 08:30:28,094 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 05:22:18] 2025-11-26 08:30:28,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,277 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,277 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,277 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,279 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,283 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:22:18] 2025-11-26 08:30:28,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,284 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:22:18] 2025-11-26 08:30:28,285 | INFO     | job 6896044168 has completed (purged errors)
[2025-11-26 05:22:18] 2025-11-26 08:30:28,285 | INFO     | overall cleanup function is called
[2025-11-26 05:22:18] 2025-11-26 08:30:28,870 | INFO     | PID=326711 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:22:18] 2025-11-26 08:30:28,870 | INFO     | .. there are 42 such processes running
[2025-11-26 05:22:18] 2025-11-26 08:30:29,325 | INFO     | --- collectZombieJob: --- 10, [364363]
[2025-11-26 05:22:18] 2025-11-26 08:30:29,326 | INFO     | zombie collector waiting for pid 364363
[2025-11-26 05:22:18] 2025-11-26 08:30:29,326 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:22:18] 2025-11-26 08:30:29,326 | INFO     | collected zombie processes
[2025-11-26 05:22:18] 2025-11-26 08:30:29,326 | INFO     | will attempt to kill all subprocesses of pid=364363
[2025-11-26 05:22:18] 2025-11-26 08:30:34,510 | INFO     | process IDs to be killed: [364363] (in reverse order)
[2025-11-26 05:22:18] 2025-11-26 08:30:34,935 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:22:18] 2025-11-26 08:30:34,935 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:22:18] 2025-11-26 08:30:34,957 | INFO     | did not find any defunct processes belonging to 364363
[2025-11-26 05:22:18] 2025-11-26 08:30:35,065 | INFO     | did not find any defunct processes belonging to 364363
[2025-11-26 05:22:18] 2025-11-26 08:30:35,074 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:22:18] 2025-11-26 08:30:35,074 | INFO     | ready for new job
[2025-11-26 05:22:18] 2025-11-26 08:30:35,080 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:22:18] 2025-11-26 08:30:35,131 | INFO     | ***************************************
[2025-11-26 05:22:18] 2025-11-26 08:30:35,131 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:22:18] 2025-11-26 08:30:35,131 | INFO     | ***************************************
[2025-11-26 05:22:18] 2025-11-26 08:30:35,132 | INFO     | 
[2025-11-26 05:22:18] 2025-11-26 08:30:35,165 | INFO     | architecture information:
[2025-11-26 05:22:18] 2025-11-26 08:30:35,177 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:22:18] 2025-11-26 08:30:35,392 | INFO     | cat /etc/os-release:
[2025-11-26 05:22:18] NAME="CentOS Linux"
[2025-11-26 05:22:18] VERSION="7 (Core)"
[2025-11-26 05:22:18] ID="centos"
[2025-11-26 05:22:18] ID_LIKE="rhel fedora"
[2025-11-26 05:22:18] VERSION_ID="7"
[2025-11-26 05:22:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:22:18] ANSI_COLOR="0;31"
[2025-11-26 05:22:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:22:18] HOME_URL="https://www.centos.org/"
[2025-11-26 05:22:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:22:18] 
[2025-11-26 05:22:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:22:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:22:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:22:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:22:18] 
[2025-11-26 05:22:18] 2025-11-26 08:30:35,392 | INFO     | ***************************************
[2025-11-26 05:22:18] 2025-11-26 08:30:35,897 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 05:22:18] 2025-11-26 08:30:36,109 | INFO     | sufficient remaining disk space (77524369408 B)
[2025-11-26 05:22:18] 2025-11-26 08:30:36,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:22:18] 2025-11-26 08:30:36,109 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:22:18] 2025-11-26 08:30:36,109 | INFO     | update_server=False
[2025-11-26 05:22:18] 2025-11-26 08:30:36,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:22:18] 2025-11-26 08:30:36,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:22:18] 2025-11-26 08:30:36,439 | INFO     | all job control threads have been joined
[2025-11-26 05:22:18] 2025-11-26 08:30:36,570 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 05:22:18] 2025-11-26 08:30:36,571 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 05:22:18] 2025-11-26 08:30:36,571 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:22:18] 2025-11-26 08:30:36,571 | INFO     | will abort loop
[2025-11-26 05:22:18] 2025-11-26 08:30:37,117 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:37,155 | INFO     | all data control threads have been joined
[2025-11-26 05:22:18] 2025-11-26 08:30:37,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:22:18] 2025-11-26 08:30:37,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:22:18] 2025-11-26 08:30:37,446 | INFO     | [job] control thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:37,505 | INFO     | all payload control threads have been joined
[2025-11-26 05:22:18] 2025-11-26 08:30:37,577 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:37,731 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:37,892 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,038 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,038 | INFO     | [job] validate thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,162 | INFO     | [data] control thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,231 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,479 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,514 | INFO     | [payload] control thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,547 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:38,578 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:39,318 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:30:40,121 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:22:18] 2025-11-26 08:31:06,599 | INFO     | PID=326711 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:22:18] 2025-11-26 08:31:06,599 | INFO     | .. there are 42 such processes running
[2025-11-26 05:22:18] 2025-11-26 08:31:06,615 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:22:18] 2025-11-26 08:31:06,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:22:18] 2025-11-26 08:31:06,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:22:18] 2025-11-26 08:31:06,735 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:22:18] 2025-11-26 08:31:08,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140585023792960)>', '<ExcThread(monitor, started 140584547251968)>']
[2025-11-26 05:22:18] 2025-11-26 08:31:08,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:22:18] 2025-11-26 08:31:08,629 | INFO     | [monitor] control thread has ended
[2025-11-26 05:22:18] 2025-11-26 08:31:13,578 | INFO     | all workflow threads have been joined
[2025-11-26 05:22:18] 2025-11-26 08:31:13,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:22:18] 2025-11-26 08:31:13,579 | INFO     | traces error code: 0
[2025-11-26 05:22:18] 2025-11-26 08:31:13,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:22:18] 2025-11-26 08:31:14,053 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:22:18] 2025-11-26 08:31:14,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:22:18] 2025-11-26 08:31:14,118 [wrapper] pilotpid: 326711
[2025-11-26 05:22:18] 2025-11-26 08:31:14,121 [wrapper] Pilot exit status: 0
[2025-11-26 05:22:18] 2025-11-26 08:31:14,135 [wrapper] pandaids: 6896044168
[2025-11-26 05:22:18] 2025-11-26 08:31:14,243 [wrapper] cleanup supervisor_pilot 2800540 326712
[2025-11-26 05:22:18] 2025-11-26 08:31:14,248 [wrapper] Test setup, not cleaning
[2025-11-26 05:22:18] 2025-11-26 08:31:14,251 [wrapper] apfmon messages muted
[2025-11-26 05:22:18] 2025-11-26 08:31:14,255 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:22:18] 2025-11-26 08:31:14,257 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:22:18]  *** Error codes and diagnostics ***
[2025-11-26 05:22:18]     "exeErrorCode": 0,
[2025-11-26 05:22:18]     "exeErrorDiag": "",
[2025-11-26 05:22:18]     "pilotErrorCode": 0,
[2025-11-26 05:22:18]     "pilotErrorDiag": "",
[2025-11-26 05:22:18]  *** Listing of results directory ***
[2025-11-26 05:22:18] total 1337512
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:51 queuedata.json
[2025-11-26 05:22:18] -rwx------. 1 boincer umatlas     36292 Nov 24 12:54 runpilot2-wrapper.sh
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:22:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-26 05:22:18] -rw-r--r--. 2 boincer umatlas 410937758 Nov 25 00:05 EVNT.47483658._004238.pool.root.1
[2025-11-26 05:22:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 05:22:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-26 05:22:18] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:05 input.tar.gz
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:05 pandaJob.out
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas        57 Nov 25 00:05 setup.sh.local
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas    991801 Nov 25 00:06 agis_schedconf.cvmfs.json
[2025-11-26 05:22:18] drwx------. 5 boincer umatlas      4096 Nov 25 00:06 pilot3
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas       533 Nov 26 03:08 boinc_task_state.xml
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas 924321472 Nov 26 03:26 HITS.47556185._000012.pool.root.1
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas      1058 Nov 26 03:29 memory_monitor_summary.json
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas   2610274 Nov 26 03:29 log.47556185._000012.job.log.tgz.1
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas      8614 Nov 26 03:30 heartbeat.json
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas        95 Nov 26 03:31 pilot_heartbeat.json
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas      5009 Nov 26 03:31 pilotlog.txt
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas  12605368 Nov 26 03:31 log.47556185._000012.job.log.1
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas       353 Nov 26 03:31 output.list
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:31 runtime_log
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas  15237120 Nov 26 03:31 result.tar.gz
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 03:31 runtime_log.err
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas       664 Nov 26 03:31 kXzNDmFxph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYpLKDmuMBmPm.diag
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas      6902 Nov 26 05:22 init_data.xml
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 05:22 boinc_mmap_file
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas        29 Nov 26 05:22 wrapper_checkpoint.txt
[2025-11-26 05:22:18] -rw-r--r--. 1 boincer umatlas     21597 Nov 26 05:22 stderr.txt
[2025-11-26 05:22:18] HITS file was successfully produced:
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas 924321472 Nov 26 03:26 shared/HITS.pool.root.1
[2025-11-26 05:22:18]  *** Contents of shared directory: ***
[2025-11-26 05:22:18] total 1319448
[2025-11-26 05:22:18] -rw-r--r--. 2 boincer umatlas 410937758 Nov 25 00:05 ATLAS.root_0
[2025-11-26 05:22:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 05:22:18] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:05 input.tar.gz
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas 924321472 Nov 26 03:26 HITS.pool.root.1
[2025-11-26 05:22:18] -rw-------. 1 boincer umatlas  15237120 Nov 26 03:31 result.tar.gz
05:22:20 (313632): run_atlas exited; CPU time 205943.933134
05:22:20 (313632): called boinc_finish(0)

</stderr_txt>
]]>

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