Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:13 (3555944): wrapper (7.7.26015): starting
00:05:13 (3555944): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:05:13] Arguments: --nthreads 12
[2025-11-25 00:05:13] Threads: 12
[2025-11-25 00:05:13] Checking for CVMFS
[2025-11-25 00:05:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:16] 2.13.2.0 6307 31012 298248 153270 2 372 28475671 40960001 12657 16776704 0 45674124 99.753 26511074 39594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:05:16] CVMFS is ok
[2025-11-25 00:05:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:16] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:16] Checking for apptainer binary...
[2025-11-25 00:05:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:16] Running /usr/bin/apptainer --version
[2025-11-25 00:05:16] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:17] c-206-39.aglt2.org
[2025-11-25 00:05:17] apptainer works
[2025-11-25 00:05:17] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:05:17] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:05:17] Starting ATLAS job with PandaID=6895386728
[2025-11-25 00:05:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:20:07 (3555944): BOINC client no longer exists - exiting
17:20:07 (3555944): timer handler: client dead, exiting
17:58:04 (1660669): wrapper (7.7.26015): starting
17:58:04 (1660669): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:58:04] Arguments: --nthreads 8
[2025-11-25 17:58:04] Threads: 8
[2025-11-25 17:58:04] This job has been restarted, cleaning up previous attempt
[2025-11-25 17:58:04] Checking for CVMFS
[2025-11-25 17:58:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:58:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:58:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:58:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:58:05] 2.13.2.0 6307 32084 303828 153300 3 522 22226067 40960001 11618 16776704 0 48104692 99.744 28178009 39000 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 17:58:05] CVMFS is ok
[2025-11-25 17:58:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:58:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:58:05] Further information can be found at the LHC@home message board.
[2025-11-25 17:58:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:58:05] Checking for apptainer binary...
[2025-11-25 17:58:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:58:05] Running /usr/bin/apptainer --version
[2025-11-25 17:58:05] apptainer version 1.4.4-1.el9
[2025-11-25 17:58:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:58:05] c-206-39.aglt2.org
[2025-11-25 17:58:05] apptainer works
[2025-11-25 17:58:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:58:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:58:05] Starting ATLAS job with PandaID=6895386728
[2025-11-25 17:58:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:35:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:35:30] 2025-11-26 17:34:28,081 | INFO     | monitor loop #4048: job 0:6895386728 is in state 'finished'
[2025-11-26 12:35:30] 2025-11-26 17:34:28,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,134 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 12:35:30] 2025-11-26 17:34:28,149 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3219.856609374999
[2025-11-26 12:35:30] 2025-11-26 17:34:28,200 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895386728/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,200 | INFO     | extracted standard info from prmon json
[2025-11-26 12:35:30] 2025-11-26 17:34:28,200 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:35:30] 2025-11-26 17:34:28,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:35:30] 2025-11-26 17:34:28,283 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:35:30] 2025-11-26 17:34:28,285 | INFO     | sum of square deviations: 409344955015.14844
[2025-11-26 12:35:30] 2025-11-26 17:34:28,304 | INFO     | sum of deviations: 2618147889110.072
[2025-11-26 12:35:30] 2025-11-26 17:34:28,304 | INFO     | mean x: 1764144977.0592525
[2025-11-26 12:35:30] 2025-11-26 17:34:28,304 | INFO     | mean y: 2919610.0911577027
[2025-11-26 12:35:30] 2025-11-26 17:34:28,304 | INFO     | intersect: -11280454940.35589
[2025-11-26 12:35:30] 2025-11-26 17:34:28,305 | INFO     | chi2: 5.446780502947264
[2025-11-26 12:35:30] 2025-11-26 17:34:28,306 | INFO     | sum of square deviations: 403774097333.139
[2025-11-26 12:35:30] 2025-11-26 17:34:28,325 | INFO     | sum of deviations: 2959931919749.4224
[2025-11-26 12:35:30] 2025-11-26 17:34:28,325 | INFO     | mean x: 1764144824.57326
[2025-11-26 12:35:30] 2025-11-26 17:34:28,325 | INFO     | mean y: 2928963.144688645
[2025-11-26 12:35:30] 2025-11-26 17:34:28,326 | INFO     | intersect: -12929422596.313734
[2025-11-26 12:35:30] 2025-11-26 17:34:28,326 | INFO     | chi2: 2.674029891215443
[2025-11-26 12:35:30] 2025-11-26 17:34:28,327 | INFO     | current chi2=2.674029891215443 (change=50.906230023983525 %)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,328 | INFO     | sum of square deviations: 398253898331.0433
[2025-11-26 12:35:30] 2025-11-26 17:34:28,348 | INFO     | sum of deviations: 3026526794622.7456
[2025-11-26 12:35:30] 2025-11-26 17:34:28,348 | INFO     | mean x: 1764144672.0855565
[2025-11-26 12:35:30] 2025-11-26 17:34:28,348 | INFO     | mean y: 2930798.518859246
[2025-11-26 12:35:30] 2025-11-26 17:34:28,348 | INFO     | intersect: -13403670221.666834
[2025-11-26 12:35:30] 2025-11-26 17:34:28,349 | INFO     | chi2: 2.400622368573167
[2025-11-26 12:35:30] 2025-11-26 17:34:28,350 | INFO     | current chi2=2.400622368573167 (change=10.224549977562244 %)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,350 | INFO     | right removable region: 1086
[2025-11-26 12:35:30] 2025-11-26 17:34:28,351 | INFO     | sum of square deviations: 403772116851.28516
[2025-11-26 12:35:30] 2025-11-26 17:34:28,375 | INFO     | sum of deviations: 2328201148570.1226
[2025-11-26 12:35:30] 2025-11-26 17:34:28,375 | INFO     | mean x: 1764145129.5723443
[2025-11-26 12:35:30] 2025-11-26 17:34:28,375 | INFO     | mean y: 2927534.163003663
[2025-11-26 12:35:30] 2025-11-26 17:34:28,375 | INFO     | intersect: -10169356646.68718
[2025-11-26 12:35:30] 2025-11-26 17:34:28,376 | INFO     | chi2: 3.2523553141274273
[2025-11-26 12:35:30] 2025-11-26 17:34:28,376 | INFO     | current chi2=3.2523553141274273 (change=40.28848211585594 %)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,377 | INFO     | sum of square deviations: 398250337049.7135
[2025-11-26 12:35:30] 2025-11-26 17:34:28,398 | INFO     | sum of deviations: 2251795314748.0
[2025-11-26 12:35:30] 2025-11-26 17:34:28,398 | INFO     | mean x: 1764145282.0818768
[2025-11-26 12:35:30] 2025-11-26 17:34:28,398 | INFO     | mean y: 2929643.685372585
[2025-11-26 12:35:30] 2025-11-26 17:34:28,398 | INFO     | intersect: -9971937195.48788
[2025-11-26 12:35:30] 2025-11-26 17:34:28,399 | INFO     | chi2: 3.206703430262379
[2025-11-26 12:35:30] 2025-11-26 17:34:28,399 | INFO     | current chi2=3.206703430262379 (change=1.4036561032168795 %)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,399 | INFO     | left removable region: 20
[2025-11-26 12:35:30] 2025-11-26 17:34:28,400 | INFO     | sum of square deviations: 375612019273.1501
[2025-11-26 12:35:30] 2025-11-26 17:34:28,420 | INFO     | sum of deviations: 2542685003196.3247
[2025-11-26 12:35:30] 2025-11-26 17:34:28,421 | INFO     | mean x: 1764145251.6275797
[2025-11-26 12:35:30] 2025-11-26 17:34:28,421 | INFO     | mean y: 2943982.7917448403
[2025-11-26 12:35:30] 2025-11-26 17:34:28,421 | INFO     | intersect: -11939340727.51572
[2025-11-26 12:35:30] 2025-11-26 17:34:28,422 | INFO     | chi2: 0.12624633822857115
[2025-11-26 12:35:30] 2025-11-26 17:34:28,422 | INFO     | current memory leak: 6.77 B/s (using 1066 data points, chi2=0.13)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | could have reported an average CPU frequency of 3235 MHz (40 samples)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | ..............................
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . Timing measurements:
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . get job = 0 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . initial setup = 1 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . payload setup = 12 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . stage-in = 0 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . payload execution = 66917 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . stage-out = 3 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | . log creation = 0 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,423 | INFO     | ..............................
[2025-11-26 12:35:30] 2025-11-26 17:34:28,592 | INFO     | time since job start (66965s) is within the limit (172800.0s)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,627 | INFO     | 
[2025-11-26 12:35:30] 2025-11-26 17:34:28,627 | INFO     | job summary report
[2025-11-26 12:35:30] 2025-11-26 17:34:28,627 | INFO     | --------------------------------------------------
[2025-11-26 12:35:30] 2025-11-26 17:34:28,627 | INFO     | PanDA job id: 6895386728
[2025-11-26 12:35:30] 2025-11-26 17:34:28,627 | INFO     | task id: 47556149
[2025-11-26 12:35:30] 2025-11-26 17:34:28,627 | INFO     | errors: (none)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,627 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | pilot state: finished 
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | transexitcode: 0
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | exeerrorcode: 0
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | exeerrordiag: 
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | exitcode: 0
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | exitmsg: OK
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | cpuconsumptiontime: 202121 s
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | nevents: 1000
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | neventsw: 0
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | pid: 1677350
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | pgrp: 1677350
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | corecount: 8
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | event service: False
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | sizes: {0: 2284264, 1: 2284264, 10: 2284554, 11: 2284582, 66933: 2340765, 66936: 2349759, 66938: 2349943, 66944: 2350189}
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | --------------------------------------------------
[2025-11-26 12:35:30] 2025-11-26 17:34:28,628 | INFO     | 
[2025-11-26 12:35:30] 2025-11-26 17:34:28,629 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 12:35:30] 2025-11-26 17:34:28,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,650 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:35:30] 2025-11-26 17:34:28,651 | INFO     | job 6895386728 has completed (purged errors)
[2025-11-26 12:35:30] 2025-11-26 17:34:28,651 | INFO     | overall cleanup function is called
[2025-11-26 12:35:30] 2025-11-26 17:34:29,680 | INFO     | --- collectZombieJob: --- 10, [1677350]
[2025-11-26 12:35:30] 2025-11-26 17:34:29,680 | INFO     | zombie collector waiting for pid 1677350
[2025-11-26 12:35:30] 2025-11-26 17:34:29,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:35:30] 2025-11-26 17:34:29,680 | INFO     | collected zombie processes
[2025-11-26 12:35:30] 2025-11-26 17:34:29,680 | INFO     | will attempt to kill all subprocesses of pid=1677350
[2025-11-26 12:35:30] 2025-11-26 17:34:30,489 | INFO     | process IDs to be killed: [1677350] (in reverse order)
[2025-11-26 12:35:30] 2025-11-26 17:34:30,589 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:35:30] 2025-11-26 17:34:30,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:35:30] 2025-11-26 17:34:30,601 | INFO     | did not find any defunct processes belonging to 1677350
[2025-11-26 12:35:30] 2025-11-26 17:34:30,610 | INFO     | did not find any defunct processes belonging to 1677350
[2025-11-26 12:35:30] 2025-11-26 17:34:30,611 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:35:30] 2025-11-26 17:34:30,611 | INFO     | ready for new job
[2025-11-26 12:35:30] 2025-11-26 17:34:30,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:35:30] 2025-11-26 17:34:30,616 | INFO     | ***************************************
[2025-11-26 12:35:30] 2025-11-26 17:34:30,616 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:35:30] 2025-11-26 17:34:30,616 | INFO     | ***************************************
[2025-11-26 12:35:30] 2025-11-26 17:34:30,616 | INFO     | 
[2025-11-26 12:35:30] 2025-11-26 17:34:30,620 | INFO     | architecture information:
[2025-11-26 12:35:30] 2025-11-26 17:34:30,621 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:35:30] 2025-11-26 17:34:30,637 | INFO     | cat /etc/os-release:
[2025-11-26 12:35:30] NAME="CentOS Linux"
[2025-11-26 12:35:30] VERSION="7 (Core)"
[2025-11-26 12:35:30] ID="centos"
[2025-11-26 12:35:30] ID_LIKE="rhel fedora"
[2025-11-26 12:35:30] VERSION_ID="7"
[2025-11-26 12:35:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:35:30] ANSI_COLOR="0;31"
[2025-11-26 12:35:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:35:30] HOME_URL="https://www.centos.org/"
[2025-11-26 12:35:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:35:30] 
[2025-11-26 12:35:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:35:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:35:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:35:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:35:30] 
[2025-11-26 12:35:30] 2025-11-26 17:34:30,637 | INFO     | ***************************************
[2025-11-26 12:35:30] 2025-11-26 17:34:31,139 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 12:35:30] 2025-11-26 17:34:31,166 | INFO     | sufficient remaining disk space (78856060928 B)
[2025-11-26 12:35:30] 2025-11-26 17:34:31,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:35:30] 2025-11-26 17:34:31,166 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:35:30] 2025-11-26 17:34:31,166 | INFO     | update_server=False
[2025-11-26 12:35:30] 2025-11-26 17:34:31,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:35:30] 2025-11-26 17:34:31,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:35:30] 2025-11-26 17:34:31,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:35:30] 2025-11-26 17:34:31,661 | INFO     | aborting loop
[2025-11-26 12:35:30] 2025-11-26 17:34:31,735 | INFO     | all job control threads have been joined
[2025-11-26 12:35:30] 2025-11-26 17:34:32,036 | INFO     | all data control threads have been joined
[2025-11-26 12:35:30] 2025-11-26 17:34:32,172 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:32,294 | INFO     | all payload control threads have been joined
[2025-11-26 12:35:30] 2025-11-26 17:34:32,425 | INFO     | [job] validate thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:32,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:35:30] 2025-11-26 17:34:32,645 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:32,659 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:32,666 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:32,740 | INFO     | [job] control thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,041 | INFO     | [data] control thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,043 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,102 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,173 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,299 | INFO     | [payload] control thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,401 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,490 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:33,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:35:30] 2025-11-26 17:34:34,529 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:34:36,558 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:35:30] 2025-11-26 17:35:02,058 | INFO     | PID=1664628 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 12:35:30] 2025-11-26 17:35:02,058 | INFO     | .. there are 15 such processes running
[2025-11-26 12:35:30] 2025-11-26 17:35:02,059 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:35:30] 2025-11-26 17:35:02,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:35:30] 2025-11-26 17:35:02,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:35:30] 2025-11-26 17:35:24,966 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:35:30] 2025-11-26 17:35:25,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139744673601344)>', '<ExcThread(monitor, started 139744033875712)>']
[2025-11-26 12:35:30] 2025-11-26 17:35:25,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:35:30] 2025-11-26 17:35:25,237 | INFO     | [monitor] control thread has ended
[2025-11-26 12:35:30] 2025-11-26 17:35:30,122 | INFO     | all workflow threads have been joined
[2025-11-26 12:35:30] 2025-11-26 17:35:30,126 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:35:30] 2025-11-26 17:35:30,126 | INFO     | traces error code: 0
[2025-11-26 12:35:30] 2025-11-26 17:35:30,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:35:30] 2025-11-26 17:35:30,237 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:35:30] 2025-11-26 17:35:30,241 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:35:30] 2025-11-26 17:35:30,249 [wrapper] pilotpid: 1664628
[2025-11-26 12:35:30] 2025-11-26 17:35:30,253 [wrapper] Pilot exit status: 0
[2025-11-26 12:35:30] 2025-11-26 17:35:30,268 [wrapper] pandaids: 6895386728 6895386728
[2025-11-26 12:35:30] 2025-11-26 17:35:30,368 [wrapper] cleanup supervisor_pilot   82405 1664629
[2025-11-26 12:35:30] 2025-11-26 17:35:30,374 [wrapper] Test setup, not cleaning
[2025-11-26 12:35:30] 2025-11-26 17:35:30,376 [wrapper] apfmon messages muted
[2025-11-26 12:35:30] 2025-11-26 17:35:30,379 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:35:30] 2025-11-26 17:35:30,381 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:35:30]  *** Error codes and diagnostics ***
[2025-11-26 12:35:30]     "exeErrorCode": 0,
[2025-11-26 12:35:30]     "exeErrorDiag": "",
[2025-11-26 12:35:30]     "pilotErrorCode": 0,
[2025-11-26 12:35:30]     "pilotErrorDiag": "",
[2025-11-26 12:35:30]  *** Listing of results directory ***
[2025-11-26 12:35:30] total 1719564
[2025-11-26 12:35:30] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:52 queuedata.json
[2025-11-26 12:35:30] -rwx------. 1 boincer umatlas     36292 Nov 24 00:53 runpilot2-wrapper.sh
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:35:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-26 12:35:30] -rw-r--r--. 3 boincer umatlas 409435273 Nov 25 00:05 EVNT.47483658._001252.pool.root.1
[2025-11-26 12:35:30] -rw-r--r--. 3 boincer umatlas 409435273 Nov 25 00:05 ATLAS.root_0
[2025-11-26 12:35:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-26 12:35:30] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:05 input.tar.gz
[2025-11-26 12:35:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 17:58 pandaJob.out
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas        57 Nov 25 17:58 setup.sh.local
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas    991877 Nov 25 17:58 agis_schedconf.cvmfs.json
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas       533 Nov 26 12:24 boinc_task_state.xml
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas      6903 Nov 26 12:29 init_data.xml
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas 916597172 Nov 26 12:33 HITS.47556149._002388.pool.root.1
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas      1059 Nov 26 12:34 memory_monitor_summary.json
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas   2194466 Nov 26 12:34 log.47556149._002388.job.log.tgz.1
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas      8607 Nov 26 12:34 heartbeat.json
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas        97 Nov 26 12:35 pilot_heartbeat.json
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:35 boinc_mmap_file
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas        29 Nov 26 12:35 wrapper_checkpoint.txt
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas      4824 Nov 26 12:35 pilotlog.txt
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas   8522308 Nov 26 12:35 log.47556149._002388.job.log.1
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas       353 Nov 26 12:35 output.list
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:35 runtime_log
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas  10741760 Nov 26 12:35 result.tar.gz
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas      9428 Nov 26 12:35 runtime_log.err
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas       789 Nov 26 12:35 II8KDmogeh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmswIKDmpnnGFm.diag
[2025-11-26 12:35:30] -rw-r--r--. 1 boincer umatlas     23623 Nov 26 12:35 stderr.txt
[2025-11-26 12:35:30] HITS file was successfully produced:
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas 916597172 Nov 26 12:33 shared/HITS.pool.root.1
[2025-11-26 12:35:30]  *** Contents of shared directory: ***
[2025-11-26 12:35:30] total 1306052
[2025-11-26 12:35:30] -rw-r--r--. 3 boincer umatlas 409435273 Nov 25 00:05 ATLAS.root_0
[2025-11-26 12:35:30] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:05 input.tar.gz
[2025-11-26 12:35:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas 916597172 Nov 26 12:33 HITS.pool.root.1
[2025-11-26 12:35:30] -rw-------. 1 boincer umatlas  10741760 Nov 26 12:35 result.tar.gz
12:35:32 (1660669): run_atlas exited; CPU time 201908.321014
12:35:32 (1660669): called boinc_finish(0)

</stderr_txt>
]]>

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