Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:42 (4029354): wrapper (7.7.26015): starting
00:04:42 (4029354): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:04:42] Arguments: --nthreads 8
[2025-11-25 00:04:42] Threads: 8
[2025-11-25 00:04:42] Checking for CVMFS
[2025-11-25 00:04:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:04:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:04:43] 2.13.3.0 12275 28164 385128 153270 3 490 39445914 40960000 26135 16776704 25 170757228 99.690 140634804 35916 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:04:43] CVMFS is ok
[2025-11-25 00:04:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:04:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:04:43] Further information can be found at the LHC@home message board.
[2025-11-25 00:04:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:04:43] Checking for apptainer binary...
[2025-11-25 00:04:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:04:43] Running /usr/bin/apptainer --version
[2025-11-25 00:04:43] apptainer version 1.4.4-1.el9
[2025-11-25 00:04:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:04:43] c7-11-11.aglt2.org
[2025-11-25 00:04:43] apptainer works
[2025-11-25 00:04:43] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:04:43] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:04:43] Starting ATLAS job with PandaID=6895366966
[2025-11-25 00:04:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:39:26]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:39:26] 2025-11-26 03:38:37,050 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 22:39:26] 2025-11-26 03:38:37,051 | INFO     | executing command: lscpu
[2025-11-25 22:39:26] 2025-11-26 03:38:37,116 | INFO     | time since job start (81222s) is within the limit (172800.0s)
[2025-11-25 22:39:26] 2025-11-26 03:38:37,116 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 22:39:26] 2025-11-26 03:38:39,149 | INFO     | time since job start (81224s) is within the limit (172800.0s)
[2025-11-25 22:39:26] 2025-11-26 03:38:39,247 | INFO     | monitor loop #5113: job 0:6895366966 is in state 'finished'
[2025-11-25 22:39:26] 2025-11-26 03:38:39,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:26] 2025-11-26 03:38:41,161 | INFO     | time since job start (81226s) is within the limit (172800.0s)
[2025-11-25 22:39:26] 2025-11-26 03:38:41,756 | INFO     | monitor loop #5114: job 0:6895366966 is in state 'finished'
[2025-11-25 22:39:26] 2025-11-26 03:38:41,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:26] 2025-11-26 03:38:43,168 | INFO     | time since job start (81228s) is within the limit (172800.0s)
[2025-11-25 22:39:26] 2025-11-26 03:38:44,271 | INFO     | monitor loop #5115: job 0:6895366966 is in state 'finished'
[2025-11-25 22:39:26] 2025-11-26 03:38:44,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:26] 2025-11-26 03:38:45,175 | INFO     | time since job start (81230s) is within the limit (172800.0s)
[2025-11-25 22:39:26] 2025-11-26 03:38:46,729 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 22:39:26] 2025-11-26 03:38:46,733 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3262.26990625
[2025-11-25 22:39:26] 2025-11-26 03:38:46,743 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895366966/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:39:26] 2025-11-26 03:38:46,744 | INFO     | extracted standard info from prmon json
[2025-11-25 22:39:26] 2025-11-26 03:38:46,744 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:39:26] 2025-11-26 03:38:46,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:39:26] 2025-11-26 03:38:46,761 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:39:26] 2025-11-26 03:38:46,763 | INFO     | sum of square deviations: 731149004340.7151
[2025-11-25 22:39:26] 2025-11-26 03:38:46,788 | INFO     | monitor loop #5116: job 0:6895366966 is in state 'finished'
[2025-11-25 22:39:26] 2025-11-26 03:38:46,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:26] 2025-11-26 03:38:46,807 | INFO     | sum of deviations: 5193561917109.503
[2025-11-25 22:39:26] 2025-11-26 03:38:46,807 | INFO     | mean x: 1764087704.078888
[2025-11-25 22:39:26] 2025-11-26 03:38:46,807 | INFO     | mean y: 2780119.7761081895
[2025-11-25 22:39:26] 2025-11-26 03:38:46,807 | INFO     | intersect: -12528042823.225275
[2025-11-25 22:39:26] 2025-11-26 03:38:46,808 | INFO     | chi2: 13.343855530862108
[2025-11-25 22:39:26] 2025-11-26 03:38:46,810 | INFO     | sum of square deviations: 722940386072.375
[2025-11-25 22:39:26] 2025-11-26 03:38:46,864 | INFO     | sum of deviations: 5634457161172.372
[2025-11-25 22:39:26] 2025-11-26 03:38:46,865 | INFO     | mean x: 1764087551.5829563
[2025-11-25 22:39:26] 2025-11-26 03:38:46,865 | INFO     | mean y: 2788311.7330316743
[2025-11-25 22:39:26] 2025-11-26 03:38:46,865 | INFO     | intersect: -13746167936.170572
[2025-11-25 22:39:26] 2025-11-26 03:38:46,866 | INFO     | chi2: 10.126835183626056
[2025-11-25 22:39:26] 2025-11-26 03:38:46,866 | INFO     | current chi2=10.126835183626056 (change=24.10862692417211 %)
[2025-11-25 22:39:26] 2025-11-26 03:38:46,866 | INFO     | right removable region: 1325
[2025-11-25 22:39:26] 2025-11-26 03:38:46,867 | INFO     | sum of square deviations: 722939510112.374
[2025-11-25 22:39:26] 2025-11-26 03:38:46,904 | INFO     | sum of deviations: 4738806227916.7
[2025-11-25 22:39:26] 2025-11-26 03:38:46,905 | INFO     | mean x: 1764087856.5829563
[2025-11-25 22:39:26] 2025-11-26 03:38:46,905 | INFO     | mean y: 2788565.5889894417
[2025-11-25 22:39:26] 2025-11-26 03:38:46,905 | INFO     | intersect: -11560655407.846775
[2025-11-25 22:39:26] 2025-11-26 03:38:46,906 | INFO     | chi2: 10.103594562561517
[2025-11-25 22:39:26] 2025-11-26 03:38:46,906 | INFO     | current chi2=10.103594562561517 (change=24.282794135521094 %)
[2025-11-25 22:39:26] 2025-11-26 03:38:46,906 | INFO     | left removable region: 10
[2025-11-25 22:39:26] 2025-11-26 03:38:46,907 | INFO     | sum of square deviations: 705096444537.8671
[2025-11-25 22:39:26] 2025-11-26 03:38:46,944 | INFO     | sum of deviations: 4765287418495.171
[2025-11-25 22:39:26] 2025-11-26 03:38:46,944 | INFO     | mean x: 1764087826.0920153
[2025-11-25 22:39:26] 2025-11-26 03:38:46,944 | INFO     | mean y: 2806228.196958175
[2025-11-25 22:39:26] 2025-11-26 03:38:46,944 | INFO     | intersect: -11919513885.481213
[2025-11-25 22:39:26] 2025-11-26 03:38:46,945 | INFO     | chi2: 3.453195422310649
[2025-11-25 22:39:26] 2025-11-26 03:38:46,946 | INFO     | current memory leak: 6.76 B/s (using 1315 data points, chi2=3.45)
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | could have reported an average CPU frequency of 3281 MHz (48 samples)
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | ..............................
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . Timing measurements:
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . get job = 0 s
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . initial setup = 2 s
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . payload setup = 8 s
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . stage-in = 0 s
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . payload execution = 81184 s
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . stage-out = 4 s
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | . log creation = 0 s
[2025-11-25 22:39:26] 2025-11-26 03:38:46,947 | INFO     | ..............................
[2025-11-25 22:39:26] 2025-11-26 03:38:47,185 | INFO     | time since job start (81232s) is within the limit (172800.0s)
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | 
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | job summary report
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | --------------------------------------------------
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | PanDA job id: 6895366966
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | task id: 47556137
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | errors: (none)
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:39:26] 2025-11-26 03:38:47,338 | INFO     | pilot state: finished 
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | transexitcode: 0
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | exeerrorcode: 0
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | exeerrordiag: 
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | exitcode: 0
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | exitmsg: OK
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | cpuconsumptiontime: 198356 s
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | nevents: 1000
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | neventsw: 0
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | pid: 4072610
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | pgrp: 4072610
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | corecount: 8
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | event service: False
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | sizes: {0: 2284088, 1: 2284287, 9: 2284549, 11: 2284577, 81194: 2348092, 81200: 2357091, 81203: 2357275, 81213: 2357521}
[2025-11-25 22:39:26] 2025-11-26 03:38:47,339 | INFO     | --------------------------------------------------
[2025-11-25 22:39:26] 2025-11-26 03:38:47,340 | INFO     | 
[2025-11-25 22:39:26] 2025-11-26 03:38:47,340 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 22:39:26] 2025-11-26 03:38:47,411 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,411 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | job 6895366966 has completed (purged errors)
[2025-11-25 22:39:27] 2025-11-26 03:38:47,413 | INFO     | overall cleanup function is called
[2025-11-25 22:39:27] 2025-11-26 03:38:48,437 | INFO     | --- collectZombieJob: --- 10, [4072610]
[2025-11-25 22:39:27] 2025-11-26 03:38:48,437 | INFO     | zombie collector waiting for pid 4072610
[2025-11-25 22:39:27] 2025-11-26 03:38:48,437 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:39:27] 2025-11-26 03:38:48,437 | INFO     | collected zombie processes
[2025-11-25 22:39:27] 2025-11-26 03:38:48,437 | INFO     | will attempt to kill all subprocesses of pid=4072610
[2025-11-25 22:39:27] 2025-11-26 03:38:48,916 | INFO     | process IDs to be killed: [4072610] (in reverse order)
[2025-11-25 22:39:27] 2025-11-26 03:38:49,096 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:39:27] 2025-11-26 03:38:49,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:39:27] 2025-11-26 03:38:49,318 | INFO     | did not find any defunct processes belonging to 4072610
[2025-11-25 22:39:27] 2025-11-26 03:38:49,346 | INFO     | did not find any defunct processes belonging to 4072610
[2025-11-25 22:39:27] 2025-11-26 03:38:49,347 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:39:27] 2025-11-26 03:38:49,347 | INFO     | ready for new job
[2025-11-25 22:39:27] 2025-11-26 03:38:49,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:39:27] 2025-11-26 03:38:49,354 | INFO     | ***************************************
[2025-11-25 22:39:27] 2025-11-26 03:38:49,354 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:39:27] 2025-11-26 03:38:49,354 | INFO     | ***************************************
[2025-11-25 22:39:27] 2025-11-26 03:38:49,354 | INFO     | 
[2025-11-25 22:39:27] 2025-11-26 03:38:49,358 | INFO     | architecture information:
[2025-11-25 22:39:27] 2025-11-26 03:38:49,360 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:39:27] 2025-11-26 03:38:49,382 | INFO     | cat /etc/os-release:
[2025-11-25 22:39:27] NAME="CentOS Linux"
[2025-11-25 22:39:27] VERSION="7 (Core)"
[2025-11-25 22:39:27] ID="centos"
[2025-11-25 22:39:27] ID_LIKE="rhel fedora"
[2025-11-25 22:39:27] VERSION_ID="7"
[2025-11-25 22:39:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:39:27] ANSI_COLOR="0;31"
[2025-11-25 22:39:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:39:27] HOME_URL="https://www.centos.org/"
[2025-11-25 22:39:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:39:27] 
[2025-11-25 22:39:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:39:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:39:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:39:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:39:27] 
[2025-11-25 22:39:27] 2025-11-26 03:38:49,383 | INFO     | ***************************************
[2025-11-25 22:39:27] 2025-11-26 03:38:49,885 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 22:39:27] 2025-11-26 03:38:49,908 | INFO     | sufficient remaining disk space (79526100992 B)
[2025-11-25 22:39:27] 2025-11-26 03:38:49,909 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:39:27] 2025-11-26 03:38:49,909 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:39:27] 2025-11-26 03:38:49,909 | INFO     | update_server=False
[2025-11-25 22:39:27] 2025-11-26 03:38:49,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:39:27] 2025-11-26 03:38:49,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:39:27] 2025-11-26 03:38:50,017 | INFO     | all payload control threads have been joined
[2025-11-25 22:39:27] 2025-11-26 03:38:50,184 | INFO     | all data control threads have been joined
[2025-11-25 22:39:27] 2025-11-26 03:38:50,321 | INFO     | all job control threads have been joined
[2025-11-25 22:39:27] 2025-11-26 03:38:50,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:39:27] 2025-11-26 03:38:50,323 | INFO     | aborting loop
[2025-11-25 22:39:27] 2025-11-26 03:38:50,915 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:50,962 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,023 | INFO     | [payload] control thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,060 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,190 | INFO     | [data] control thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,316 | INFO     | [job] validate thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,329 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,344 | INFO     | [job] control thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,393 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,826 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,826 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:51,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:39:27] 2025-11-26 03:38:51,916 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:52,036 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:52,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:39:27] 2025-11-26 03:38:52,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:53,072 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:38:55,896 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:39:27] 2025-11-26 03:39:19,582 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:39:27] 2025-11-26 03:39:20,787 | INFO     | PID=4041103 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 22:39:27] 2025-11-26 03:39:20,787 | INFO     | .. there are 34 such processes running
[2025-11-25 22:39:27] 2025-11-26 03:39:20,787 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:39:27] 2025-11-26 03:39:20,788 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:39:27] 2025-11-26 03:39:20,788 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:39:27] 2025-11-26 03:39:21,120 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140007254185792)>', '<ExcThread(monitor, started 140006538606336)>']
[2025-11-25 22:39:27] 2025-11-26 03:39:21,793 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:39:27] 2025-11-26 03:39:21,793 | INFO     | [monitor] control thread has ended
[2025-11-25 22:39:27] 2025-11-26 03:39:26,146 | INFO     | all workflow threads have been joined
[2025-11-25 22:39:27] 2025-11-26 03:39:26,146 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:39:27] 2025-11-26 03:39:26,146 | INFO     | traces error code: 0
[2025-11-25 22:39:27] 2025-11-26 03:39:26,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:39:27] 2025-11-26 03:39:26,570 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:39:27] 2025-11-26 03:39:26,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:39:27] 2025-11-26 03:39:26,581 [wrapper] pilotpid: 4041103
[2025-11-25 22:39:27] 2025-11-26 03:39:26,583 [wrapper] Pilot exit status: 0
[2025-11-25 22:39:27] 2025-11-26 03:39:26,644 [wrapper] pandaids: 6895366966
[2025-11-25 22:39:27] 2025-11-26 03:39:26,759 [wrapper] cleanup supervisor_pilot  540316 4041104
[2025-11-25 22:39:27] 2025-11-26 03:39:26,762 [wrapper] Test setup, not cleaning
[2025-11-25 22:39:27] 2025-11-26 03:39:26,764 [wrapper] apfmon messages muted
[2025-11-25 22:39:27] 2025-11-26 03:39:26,766 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:39:27] 2025-11-26 03:39:26,768 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:39:27]  *** Error codes and diagnostics ***
[2025-11-25 22:39:27]     "exeErrorCode": 0,
[2025-11-25 22:39:27]     "exeErrorDiag": "",
[2025-11-25 22:39:27]     "pilotErrorCode": 0,
[2025-11-25 22:39:27]     "pilotErrorDiag": "",
[2025-11-25 22:39:27]  *** Listing of results directory ***
[2025-11-25 22:39:27] total 1316488
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 13:58 queuedata.json
[2025-11-25 22:39:27] -rwx------. 1 boincer umatlas     36292 Nov 23 13:59 runpilot2-wrapper.sh
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:39:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-25 22:39:27] -rw-r--r--. 2 boincer umatlas 409823627 Nov 25 00:04 EVNT.47483658._000854.pool.root.1
[2025-11-25 22:39:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-25 22:39:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-25 22:39:27] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:04 input.tar.gz
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:04 pandaJob.out
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas        57 Nov 25 00:04 setup.sh.local
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas    991801 Nov 25 00:04 agis_schedconf.cvmfs.json
[2025-11-25 22:39:27] drwx------. 5 boincer umatlas      4096 Nov 25 00:04 pilot3
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas       532 Nov 25 22:26 boinc_task_state.xml
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas      6904 Nov 25 22:28 init_data.xml
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas 908301027 Nov 25 22:37 HITS.47556137._008409.pool.root.1
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas      1056 Nov 25 22:38 memory_monitor_summary.json
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas   1516240 Nov 25 22:38 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas   2410018 Nov 25 22:38 log.47556137._008409.job.log.tgz.1
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas      8600 Nov 25 22:38 heartbeat.json
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas        95 Nov 25 22:39 pilot_heartbeat.json
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas        28 Nov 25 22:39 wrapper_checkpoint.txt
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 22:39 boinc_mmap_file
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas      4824 Nov 25 22:39 pilotlog.txt
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas  10606129 Nov 25 22:39 log.47556137._008409.job.log.1
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas       353 Nov 25 22:39 output.list
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas       620 Nov 25 22:39 runtime_log
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas  13035520 Nov 25 22:39 result.tar.gz
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas       664 Nov 25 22:39 WZONDmbUUh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf7KKDmvcxx0m.diag
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 22:39 runtime_log.err
[2025-11-25 22:39:27] -rw-r--r--. 1 boincer umatlas     21802 Nov 25 22:39 stderr.txt
[2025-11-25 22:39:27] HITS file was successfully produced:
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas 908301027 Nov 25 22:37 shared/HITS.pool.root.1
[2025-11-25 22:39:27]  *** Contents of shared directory: ***
[2025-11-25 22:39:27] total 1300572
[2025-11-25 22:39:27] -rw-r--r--. 2 boincer umatlas 409823627 Nov 25 00:04 ATLAS.root_0
[2025-11-25 22:39:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-25 22:39:27] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:04 input.tar.gz
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas 908301027 Nov 25 22:37 HITS.pool.root.1
[2025-11-25 22:39:27] -rw-------. 1 boincer umatlas  13035520 Nov 25 22:39 result.tar.gz
22:39:28 (4029354): run_atlas exited; CPU time 197910.117606
22:39:28 (4029354): called boinc_finish(0)

</stderr_txt>
]]>

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