Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:46 (2700465): wrapper (7.7.26015): starting
00:05:46 (2700465): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:05:46] Arguments: --nthreads 12
[2025-11-25 00:05:46] Threads: 12
[2025-11-25 00:05:46] Checking for CVMFS
[2025-11-25 00:05:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:49] 2.13.3.0 12468 28170 359956 153270 1 435 26538701 32947200 32604 16776704 0 110065629 99.419 159490870 33871 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:05:49] CVMFS is ok
[2025-11-25 00:05:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:49] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:49] Checking for apptainer binary...
[2025-11-25 00:05:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:49] Running /usr/bin/apptainer --version
[2025-11-25 00:05:49] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:50] c6-6-8-1.aglt2.org
[2025-11-25 00:05:50] apptainer works
[2025-11-25 00:05:50] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:05:50] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:05:50] Starting ATLAS job with PandaID=6895369444
[2025-11-25 00:05:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:00:12 (2700465): BOINC client no longer exists - exiting
11:00:12 (2700465): timer handler: client dead, exiting
11:12:22 (561810): wrapper (7.7.26015): starting
11:12:22 (561810): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 11:12:22] Arguments: --nthreads 8
[2025-11-25 11:12:22] Threads: 8
[2025-11-25 11:12:22] This job has been restarted, cleaning up previous attempt
[2025-11-25 11:12:22] Checking for CVMFS
[2025-11-25 11:12:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:12:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:12:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:12:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:12:22] 2.13.3.0 12468 28837 367436 153287 0 371 29475494 32947200 29744 16776704 0 112068734 99.426 160171585 33851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 11:12:22] CVMFS is ok
[2025-11-25 11:12:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:12:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:12:22] Further information can be found at the LHC@home message board.
[2025-11-25 11:12:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:12:22] Checking for apptainer binary...
[2025-11-25 11:12:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:12:22] Running /usr/bin/apptainer --version
[2025-11-25 11:12:22] apptainer version 1.4.4-1.el9
[2025-11-25 11:12:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:12:23] c6-6-8-1.aglt2.org
[2025-11-25 11:12:23] apptainer works
[2025-11-25 11:12:23] Set ATHENA_PROC_NUMBER=8
[2025-11-25 11:12:23] Set ATHENA_CORE_NUMBER=8
[2025-11-25 11:12:23] Starting ATLAS job with PandaID=6895369444
[2025-11-25 11:12:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:19:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:19:55] 2025-11-27 06:18:36,593 | INFO     | time since job start (137157s) is within the limit (172800.0s)
[2025-11-27 01:19:55] 2025-11-27 06:18:38,600 | INFO     | time since job start (137159s) is within the limit (172800.0s)
[2025-11-27 01:19:55] 2025-11-27 06:18:38,974 | INFO     | monitor loop #7704: job 0:6895369444 is in state 'finished'
[2025-11-27 01:19:55] 2025-11-27 06:18:38,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:55] 2025-11-27 06:18:40,607 | INFO     | time since job start (137161s) is within the limit (172800.0s)
[2025-11-27 01:19:55] 2025-11-27 06:18:41,480 | INFO     | monitor loop #7705: job 0:6895369444 is in state 'finished'
[2025-11-27 01:19:55] 2025-11-27 06:18:41,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:55] 2025-11-27 06:18:42,633 | INFO     | time since job start (137163s) is within the limit (172800.0s)
[2025-11-27 01:19:55] 2025-11-27 06:18:44,028 | INFO     | monitor loop #7706: job 0:6895369444 is in state 'finished'
[2025-11-27 01:19:55] 2025-11-27 06:18:44,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:55] 2025-11-27 06:18:46,687 | INFO     | monitor loop #7707: job 0:6895369444 is in state 'finished'
[2025-11-27 01:19:55] 2025-11-27 06:18:46,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:55] 2025-11-27 06:18:48,488 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 01:19:55] 2025-11-27 06:18:48,597 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2590.1807395833325
[2025-11-27 01:19:55] 2025-11-27 06:18:48,850 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895369444/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:19:55] 2025-11-27 06:18:48,961 | INFO     | extracted standard info from prmon json
[2025-11-27 01:19:55] 2025-11-27 06:18:48,961 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:19:55] 2025-11-27 06:18:48,961 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:19:55] 2025-11-27 06:18:49,140 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:19:55] 2025-11-27 06:18:49,144 | INFO     | sum of square deviations: 3522516817571.7285
[2025-11-27 01:19:55] 2025-11-27 06:18:49,230 | INFO     | monitor loop #7708: job 0:6895369444 is in state 'finished'
[2025-11-27 01:19:55] 2025-11-27 06:18:49,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:55] 2025-11-27 06:18:49,487 | INFO     | PID=580726 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:19:55] 2025-11-27 06:18:49,487 | INFO     | .. there are 39 such processes running
[2025-11-27 01:19:55] 2025-11-27 06:18:49,500 | INFO     | sum of deviations: 10799249310778.924
[2025-11-27 01:19:55] 2025-11-27 06:18:49,500 | INFO     | mean x: 1764155734.9323843
[2025-11-27 01:19:55] 2025-11-27 06:18:49,501 | INFO     | mean y: 2928198.4928825623
[2025-11-27 01:19:55] 2025-11-27 06:18:49,501 | INFO     | intersect: -5405579011.334595
[2025-11-27 01:19:55] 2025-11-27 06:18:49,504 | INFO     | chi2: 18.346005611962035
[2025-11-27 01:19:55] 2025-11-27 06:18:49,508 | INFO     | sum of square deviations: 3499067537447.731
[2025-11-27 01:19:55] 2025-11-27 06:18:49,626 | INFO     | sum of deviations: 11596630698895.467
[2025-11-27 01:19:55] 2025-11-27 06:18:49,627 | INFO     | mean x: 1764155582.4440482
[2025-11-27 01:19:55] 2025-11-27 06:18:49,627 | INFO     | mean y: 2933383.0316540347
[2025-11-27 01:19:55] 2025-11-27 06:18:49,627 | INFO     | intersect: -5843841669.4787655
[2025-11-27 01:19:55] 2025-11-27 06:18:49,630 | INFO     | chi2: 14.831199182733574
[2025-11-27 01:19:55] 2025-11-27 06:18:49,630 | INFO     | current chi2=14.831199182733574 (change=19.15842883497606 %)
[2025-11-27 01:19:55] 2025-11-27 06:18:49,630 | INFO     | right removable region: 2242
[2025-11-27 01:19:55] 2025-11-27 06:18:49,634 | INFO     | sum of square deviations: 3499060362017.7285
[2025-11-27 01:19:55] 2025-11-27 06:18:49,828 | INFO     | sum of deviations: 10070651343452.637
[2025-11-27 01:19:55] 2025-11-27 06:18:49,829 | INFO     | mean x: 1764155887.4440482
[2025-11-27 01:19:55] 2025-11-27 06:18:49,829 | INFO     | mean y: 2932934.216228266
[2025-11-27 01:19:55] 2025-11-27 06:18:49,829 | INFO     | intersect: -5074487007.091508
[2025-11-27 01:19:55] 2025-11-27 06:18:49,832 | INFO     | chi2: 15.720658545630945
[2025-11-27 01:19:55] 2025-11-27 06:18:49,832 | INFO     | current chi2=15.720658545630945 (change=14.31018349094639 %)
[2025-11-27 01:19:55] 2025-11-27 06:18:49,833 | INFO     | left removable region: 10
[2025-11-27 01:19:55] 2025-11-27 06:18:49,836 | INFO     | sum of square deviations: 3447835931559.693
[2025-11-27 01:19:55] 2025-11-27 06:18:50,189 | INFO     | sum of deviations: 10768277738574.018
[2025-11-27 01:19:55] 2025-11-27 06:18:50,190 | INFO     | mean x: 1764155856.956093
[2025-11-27 01:19:55] 2025-11-27 06:18:50,190 | INFO     | mean y: 2940659.0103046596
[2025-11-27 01:19:55] 2025-11-27 06:18:50,190 | INFO     | intersect: -5506869151.818384
[2025-11-27 01:19:55] 2025-11-27 06:18:50,197 | INFO     | chi2: 11.484112607473469
[2025-11-27 01:19:55] 2025-11-27 06:18:50,198 | INFO     | current memory leak: 3.12 B/s (using 2232 data points, chi2=11.48)
[2025-11-27 01:19:55] 2025-11-27 06:18:50,201 | INFO     | could have reported an average CPU frequency of 2626 MHz (78 samples)
[2025-11-27 01:19:55] 2025-11-27 06:18:50,201 | INFO     | ..............................
[2025-11-27 01:19:55] 2025-11-27 06:18:50,201 | INFO     | . Timing measurements:
[2025-11-27 01:19:55] 2025-11-27 06:18:50,201 | INFO     | . get job = 0 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,201 | INFO     | . initial setup = 2 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,201 | INFO     | . payload setup = 9 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,201 | INFO     | . stage-in = 0 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,202 | INFO     | . payload execution = 137085 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,202 | INFO     | . stage-out = 14 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,202 | INFO     | . log creation = 4 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,202 | INFO     | ..............................
[2025-11-27 01:19:55] 2025-11-27 06:18:50,494 | INFO     | time since job start (137171s) is within the limit (172800.0s)
[2025-11-27 01:19:55] 2025-11-27 06:18:50,794 | INFO     | 
[2025-11-27 01:19:55] 2025-11-27 06:18:50,797 | INFO     | job summary report
[2025-11-27 01:19:55] 2025-11-27 06:18:50,797 | INFO     | --------------------------------------------------
[2025-11-27 01:19:55] 2025-11-27 06:18:50,797 | INFO     | PanDA job id: 6895369444
[2025-11-27 01:19:55] 2025-11-27 06:18:50,797 | INFO     | task id: 47556137
[2025-11-27 01:19:55] 2025-11-27 06:18:50,812 | INFO     | errors: (none)
[2025-11-27 01:19:55] 2025-11-27 06:18:50,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:19:55] 2025-11-27 06:18:50,812 | INFO     | pilot state: finished 
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | transexitcode: 0
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | exeerrorcode: 0
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | exeerrordiag: 
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | exitcode: 0
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | exitmsg: OK
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | cpuconsumptiontime: 281340 s
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | nevents: 1000
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | neventsw: 0
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | pid: 612143
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | pgrp: 612143
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | corecount: 8
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | event service: False
[2025-11-27 01:19:55] 2025-11-27 06:18:50,813 | INFO     | sizes: {0: 2283487, 1: 2284343, 7: 2284605, 12: 2284633, 137100: 2372179, 137101: 2372178, 137116: 2381356, 137117: 2381412, 137154: 2381658}
[2025-11-27 01:19:55] 2025-11-27 06:18:50,814 | INFO     | --------------------------------------------------
[2025-11-27 01:19:55] 2025-11-27 06:18:50,814 | INFO     | 
[2025-11-27 01:19:55] 2025-11-27 06:18:50,814 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,873 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,874 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:19:55] 2025-11-27 06:18:50,875 | INFO     | job 6895369444 has completed (purged errors)
[2025-11-27 01:19:55] 2025-11-27 06:18:50,875 | INFO     | overall cleanup function is called
[2025-11-27 01:19:55] 2025-11-27 06:18:51,982 | INFO     | --- collectZombieJob: --- 10, [612143]
[2025-11-27 01:19:55] 2025-11-27 06:18:51,982 | INFO     | zombie collector waiting for pid 612143
[2025-11-27 01:19:55] 2025-11-27 06:18:51,983 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:19:55] 2025-11-27 06:18:51,983 | INFO     | collected zombie processes
[2025-11-27 01:19:55] 2025-11-27 06:18:51,983 | INFO     | will attempt to kill all subprocesses of pid=612143
[2025-11-27 01:19:55] 2025-11-27 06:18:53,599 | INFO     | process IDs to be killed: [612143] (in reverse order)
[2025-11-27 01:19:55] 2025-11-27 06:18:54,169 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:19:55] 2025-11-27 06:18:54,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:19:55] 2025-11-27 06:18:54,207 | INFO     | did not find any defunct processes belonging to 612143
[2025-11-27 01:19:55] 2025-11-27 06:18:54,228 | INFO     | did not find any defunct processes belonging to 612143
[2025-11-27 01:19:55] 2025-11-27 06:18:54,239 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:19:55] 2025-11-27 06:18:54,239 | INFO     | ready for new job
[2025-11-27 01:19:55] 2025-11-27 06:18:54,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:19:55] 2025-11-27 06:18:54,271 | INFO     | ***************************************
[2025-11-27 01:19:55] 2025-11-27 06:18:54,271 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:19:55] 2025-11-27 06:18:54,271 | INFO     | ***************************************
[2025-11-27 01:19:55] 2025-11-27 06:18:54,271 | INFO     | 
[2025-11-27 01:19:55] 2025-11-27 06:18:54,296 | INFO     | architecture information:
[2025-11-27 01:19:55] 2025-11-27 06:18:54,298 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:19:55] 2025-11-27 06:18:54,361 | INFO     | cat /etc/os-release:
[2025-11-27 01:19:55] NAME="CentOS Linux"
[2025-11-27 01:19:55] VERSION="7 (Core)"
[2025-11-27 01:19:55] ID="centos"
[2025-11-27 01:19:55] ID_LIKE="rhel fedora"
[2025-11-27 01:19:55] VERSION_ID="7"
[2025-11-27 01:19:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:19:55] ANSI_COLOR="0;31"
[2025-11-27 01:19:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:19:55] HOME_URL="https://www.centos.org/"
[2025-11-27 01:19:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:19:55] 
[2025-11-27 01:19:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:19:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:19:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:19:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:19:55] 
[2025-11-27 01:19:55] 2025-11-27 06:18:54,362 | INFO     | ***************************************
[2025-11-27 01:19:55] 2025-11-27 06:18:54,865 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 01:19:55] 2025-11-27 06:18:55,002 | INFO     | sufficient remaining disk space (69489131520 B)
[2025-11-27 01:19:55] 2025-11-27 06:18:55,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:19:55] 2025-11-27 06:18:55,002 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:19:55] 2025-11-27 06:18:55,002 | INFO     | update_server=False
[2025-11-27 01:19:55] 2025-11-27 06:18:55,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:19:55] 2025-11-27 06:18:55,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:19:55] 2025-11-27 06:18:55,276 | INFO     | aborting loop
[2025-11-27 01:19:55] 2025-11-27 06:18:55,534 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:19:55] 2025-11-27 06:18:55,659 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:19:55] 2025-11-27 06:18:55,752 | INFO     | all data control threads have been joined
[2025-11-27 01:19:55] 2025-11-27 06:18:56,008 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,009 | INFO     | all job control threads have been joined
[2025-11-27 01:19:55] 2025-11-27 06:18:56,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:19:55] 2025-11-27 06:18:56,153 | INFO     | all payload control threads have been joined
[2025-11-27 01:19:55] 2025-11-27 06:18:56,181 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,182 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,282 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,537 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,540 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,608 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:56,758 | INFO     | [data] control thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:57,023 | INFO     | [job] control thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:57,087 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:57,162 | INFO     | [payload] control thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:57,395 | INFO     | [job] validate thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:57,396 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:58,029 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:18:59,669 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:19:55] 2025-11-27 06:19:25,716 | INFO     | PID=580726 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:19:55] 2025-11-27 06:19:25,716 | INFO     | .. there are 39 such processes running
[2025-11-27 01:19:55] 2025-11-27 06:19:25,716 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:19:55] 2025-11-27 06:19:25,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:19:55] 2025-11-27 06:19:25,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:19:55] 2025-11-27 06:19:47,652 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:19:55] 2025-11-27 06:19:48,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651552278336)>', '<ExcThread(monitor, started 140650909525760)>']
[2025-11-27 01:19:55] 2025-11-27 06:19:48,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:19:55] 2025-11-27 06:19:48,907 | INFO     | [monitor] control thread has ended
[2025-11-27 01:19:55] 2025-11-27 06:19:53,572 | INFO     | all workflow threads have been joined
[2025-11-27 01:19:55] 2025-11-27 06:19:53,572 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:19:55] 2025-11-27 06:19:53,573 | INFO     | traces error code: 0
[2025-11-27 01:19:55] 2025-11-27 06:19:53,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:19:55] 2025-11-27 06:19:54,486 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:19:55] 2025-11-27 06:19:54,502 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:19:55] 2025-11-27 06:19:54,517 [wrapper] pilotpid: 580726
[2025-11-27 01:19:55] 2025-11-27 06:19:54,537 [wrapper] Pilot exit status: 0
[2025-11-27 01:19:55] 2025-11-27 06:19:54,678 [wrapper] pandaids: 6895369444 6895369444
[2025-11-27 01:19:55] 2025-11-27 06:19:54,814 [wrapper] cleanup supervisor_pilot  745229 580727
[2025-11-27 01:19:55] 2025-11-27 06:19:54,818 [wrapper] Test setup, not cleaning
[2025-11-27 01:19:55] 2025-11-27 06:19:54,881 [wrapper] apfmon messages muted
[2025-11-27 01:19:55] 2025-11-27 06:19:54,897 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:19:55] 2025-11-27 06:19:54,913 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:19:55]  *** Error codes and diagnostics ***
[2025-11-27 01:19:55]     "exeErrorCode": 0,
[2025-11-27 01:19:55]     "exeErrorDiag": "",
[2025-11-27 01:19:55]     "pilotErrorCode": 0,
[2025-11-27 01:19:55]     "pilotErrorDiag": "",
[2025-11-27 01:19:55]  *** Listing of results directory ***
[2025-11-27 01:19:55] total 1739520
[2025-11-27 01:19:55] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 15:16 pilot3.tar.gz
[2025-11-27 01:19:55] -rwx------ 1 boincer umatlas     36292 Nov 23 15:21 runpilot2-wrapper.sh
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 15:21 queuedata.json
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:19:55] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-27 01:19:55] -rw-r--r-- 3 boincer umatlas 411310800 Nov 25 00:05 EVNT.47483658._000886.pool.root.1
[2025-11-27 01:19:55] -rw-r--r-- 3 boincer umatlas 411310800 Nov 25 00:05 ATLAS.root_0
[2025-11-27 01:19:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-27 01:19:55] drwxrwx--x 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-27 01:19:55] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 00:05 input.tar.gz
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 11:12 pandaJob.out
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas        57 Nov 25 11:12 setup.sh.local
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas    991909 Nov 25 11:12 agis_schedconf.cvmfs.json
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas       534 Nov 27 00:49 boinc_task_state.xml
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas      6879 Nov 27 01:10 init_data.xml
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas 915485121 Nov 27 01:16 HITS.47556137._008722.pool.root.1
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas      1084 Nov 27 01:17 memory_monitor_summary.json
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas   1516240 Nov 27 01:18 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas   3007041 Nov 27 01:18 log.47556137._008722.job.log.tgz.1
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas        96 Nov 27 01:18 pilot_heartbeat.json
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas      8642 Nov 27 01:18 heartbeat.json
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 01:19 boinc_mmap_file
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas        30 Nov 27 01:19 wrapper_checkpoint.txt
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas      4823 Nov 27 01:19 pilotlog.txt
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas  16613009 Nov 27 01:19 log.47556137._008722.job.log.1
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas       353 Nov 27 01:19 output.list
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas       620 Nov 27 01:19 runtime_log
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas  19640320 Nov 27 01:19 result.tar.gz
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas       792 Nov 27 01:19 SOPODmplVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKBLKDmpL95vm.diag
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas      9429 Nov 27 01:19 runtime_log.err
[2025-11-27 01:19:55] -rw-r--r-- 1 boincer umatlas     24164 Nov 27 01:19 stderr.txt
[2025-11-27 01:19:55] HITS file was successfully produced:
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas 915485121 Nov 27 01:16 shared/HITS.pool.root.1
[2025-11-27 01:19:55]  *** Contents of shared directory: ***
[2025-11-27 01:19:55] total 1315484
[2025-11-27 01:19:55] -rw-r--r-- 3 boincer umatlas 411310800 Nov 25 00:05 ATLAS.root_0
[2025-11-27 01:19:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-27 01:19:55] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 00:05 input.tar.gz
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas 915485121 Nov 27 01:16 HITS.pool.root.1
[2025-11-27 01:19:55] -rw------- 1 boincer umatlas  19640320 Nov 27 01:19 result.tar.gz
01:19:57 (561810): run_atlas exited; CPU time 287128.368240
01:19:57 (561810): called boinc_finish(0)

</stderr_txt>
]]>

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