Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:03 (2937473): wrapper (7.7.26015): starting
00:10:03 (2937473): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:10:03] Arguments: --nthreads 9
[2025-11-25 00:10:03] Threads: 9
[2025-11-25 00:10:03] Checking for CVMFS
[2025-11-25 00:10:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:10:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:10:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:10:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:10:06] 2.13.3.0 15733 26733 350148 153270 2 168 22235675 32935937 29788 16776704 0 140816465 99.708 104350639 26879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:10:06] CVMFS is ok
[2025-11-25 00:10:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:10:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:10:06] Further information can be found at the LHC@home message board.
[2025-11-25 00:10:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:10:06] Checking for apptainer binary...
[2025-11-25 00:10:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:10:06] Running /usr/bin/apptainer --version
[2025-11-25 00:10:06] apptainer version 1.4.4-1.el9
[2025-11-25 00:10:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:10:07] c-8-39.aglt2.org
[2025-11-25 00:10:07] apptainer works
[2025-11-25 00:10:07] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:10:07] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:10:08] Starting ATLAS job with PandaID=6895386727
[2025-11-25 00:10:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:54:43]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:54:43] 2025-11-26 01:54:05,675 | INFO     | monitor loop #4263: job 0:6895386727 is in state 'finished'
[2025-11-25 20:54:43] 2025-11-26 01:54:05,675 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:54:43] 2025-11-26 01:54:05,720 | INFO     | sum of deviations: 4956622131134.142
[2025-11-25 20:54:43] 2025-11-26 01:54:05,721 | INFO     | mean x: 1764084810.9016395
[2025-11-25 20:54:43] 2025-11-26 01:54:05,721 | INFO     | mean y: 3108842.676229508
[2025-11-25 20:54:43] 2025-11-26 01:54:05,721 | INFO     | intersect: -15526143975.119495
[2025-11-25 20:54:43] 2025-11-26 01:54:05,723 | INFO     | chi2: 13.878161442979707
[2025-11-25 20:54:43] 2025-11-26 01:54:05,724 | INFO     | sum of square deviations: 556165983033.3334
[2025-11-25 20:54:43] 2025-11-26 01:54:05,786 | INFO     | sum of deviations: 5426230230882.972
[2025-11-25 20:54:43] 2025-11-26 01:54:05,786 | INFO     | mean x: 1764084658.4074075
[2025-11-25 20:54:43] 2025-11-26 01:54:05,786 | INFO     | mean y: 3119230.048559671
[2025-11-25 20:54:43] 2025-11-26 01:54:05,786 | INFO     | intersect: -17208162644.97655
[2025-11-25 20:54:43] 2025-11-26 01:54:05,788 | INFO     | chi2: 10.343948911533857
[2025-11-25 20:54:43] 2025-11-26 01:54:05,788 | INFO     | current chi2=10.343948911533857 (change=25.46599955596883 %)
[2025-11-25 20:54:43] 2025-11-26 01:54:05,790 | INFO     | sum of square deviations: 549328432175.8884
[2025-11-25 20:54:43] 2025-11-26 01:54:05,861 | INFO     | sum of deviations: 5700389917407.992
[2025-11-25 20:54:43] 2025-11-26 01:54:05,861 | INFO     | mean x: 1764084505.913223
[2025-11-25 20:54:43] 2025-11-26 01:54:05,861 | INFO     | mean y: 3125338.8570247935
[2025-11-25 20:54:43] 2025-11-26 01:54:05,861 | INFO     | intersect: -18302807764.098755
[2025-11-25 20:54:43] 2025-11-26 01:54:05,863 | INFO     | chi2: 8.760150870075877
[2025-11-25 20:54:43] 2025-11-26 01:54:05,863 | INFO     | current chi2=8.760150870075877 (change=15.311348257839816 %)
[2025-11-25 20:54:43] 2025-11-26 01:54:05,863 | INFO     | right removable region: 1209
[2025-11-25 20:54:43] 2025-11-26 01:54:05,865 | INFO     | sum of square deviations: 556164939933.3329
[2025-11-25 20:54:43] 2025-11-26 01:54:05,942 | INFO     | sum of deviations: 4440086615705.4795
[2025-11-25 20:54:43] 2025-11-26 01:54:05,942 | INFO     | mean x: 1764084963.4074075
[2025-11-25 20:54:43] 2025-11-26 01:54:05,942 | INFO     | mean y: 3120265.4576131687
[2025-11-25 20:54:43] 2025-11-26 01:54:05,946 | INFO     | intersect: -14080273836.895226
[2025-11-25 20:54:43] 2025-11-26 01:54:05,948 | INFO     | chi2: 9.915880308995801
[2025-11-25 20:54:43] 2025-11-26 01:54:05,948 | INFO     | current chi2=9.915880308995801 (change=28.550475870045688 %)
[2025-11-25 20:54:43] 2025-11-26 01:54:05,950 | INFO     | sum of square deviations: 549326345975.88855
[2025-11-25 20:54:43] 2025-11-26 01:54:06,028 | INFO     | sum of deviations: 3962408565687.3335
[2025-11-25 20:54:43] 2025-11-26 01:54:06,028 | INFO     | mean x: 1764085115.913223
[2025-11-25 20:54:43] 2025-11-26 01:54:06,029 | INFO     | mean y: 3130917.2603305783
[2025-11-25 20:54:43] 2025-11-26 01:54:06,029 | INFO     | intersect: -12721592783.144344
[2025-11-25 20:54:43] 2025-11-26 01:54:06,030 | INFO     | chi2: 6.631219711372739
[2025-11-25 20:54:43] 2025-11-26 01:54:06,030 | INFO     | current chi2=6.631219711372739 (change=33.125254594321596 %)
[2025-11-25 20:54:43] 2025-11-26 01:54:06,032 | INFO     | sum of square deviations: 542544474274.36035
[2025-11-25 20:54:43] 2025-11-26 01:54:06,191 | INFO     | sum of deviations: 3725553512716.0527
[2025-11-25 20:54:43] 2025-11-26 01:54:06,191 | INFO     | mean x: 1764085268.4141078
[2025-11-25 20:54:43] 2025-11-26 01:54:06,191 | INFO     | mean y: 3136238.502904564
[2025-11-25 20:54:43] 2025-11-26 01:54:06,191 | INFO     | intersect: -12110514125.849188
[2025-11-25 20:54:43] 2025-11-26 01:54:06,196 | INFO     | chi2: 5.8575300500821585
[2025-11-25 20:54:43] 2025-11-26 01:54:06,196 | INFO     | current chi2=5.8575300500821585 (change=11.667380888672408 %)
[2025-11-25 20:54:43] 2025-11-26 01:54:06,197 | INFO     | left removable region: 30
[2025-11-25 20:54:43] 2025-11-26 01:54:06,198 | INFO     | sum of square deviations: 508178869953.80347
[2025-11-25 20:54:43] 2025-11-26 01:54:06,326 | INFO     | sum of deviations: 4221656615811.832
[2025-11-25 20:54:43] 2025-11-26 01:54:06,327 | INFO     | mean x: 1764085390.42324
[2025-11-25 20:54:43] 2025-11-26 01:54:06,327 | INFO     | mean y: 3160274.064461408
[2025-11-25 20:54:43] 2025-11-26 01:54:06,327 | INFO     | intersect: -14651842520.550512
[2025-11-25 20:54:43] 2025-11-26 01:54:06,329 | INFO     | chi2: 0.45829381440646766
[2025-11-25 20:54:43] 2025-11-26 01:54:06,329 | INFO     | current memory leak: 8.31 B/s (using 1179 data points, chi2=0.46)
[2025-11-25 20:54:43] 2025-11-26 01:54:06,330 | INFO     | could have reported an average CPU frequency of 2741 MHz (44 samples)
[2025-11-25 20:54:43] 2025-11-26 01:54:06,330 | INFO     | ..............................
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . Timing measurements:
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . get job = 0 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . initial setup = 4 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . payload setup = 49 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . stage-in = 0 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . payload execution = 74430 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . stage-out = 4 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,331 | INFO     | . log creation = 1 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,332 | INFO     | ..............................
[2025-11-25 20:54:43] 2025-11-26 01:54:06,477 | INFO     | 
[2025-11-25 20:54:43] 2025-11-26 01:54:06,478 | INFO     | job summary report
[2025-11-25 20:54:43] 2025-11-26 01:54:06,478 | INFO     | --------------------------------------------------
[2025-11-25 20:54:43] 2025-11-26 01:54:06,478 | INFO     | PanDA job id: 6895386727
[2025-11-25 20:54:43] 2025-11-26 01:54:06,485 | INFO     | task id: 47556149
[2025-11-25 20:54:43] 2025-11-26 01:54:06,485 | INFO     | errors: (none)
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | pilot state: finished 
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | transexitcode: 0
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | exeerrorcode: 0
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | exeerrordiag: 
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | exitcode: 0
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | exitmsg: OK
[2025-11-25 20:54:43] 2025-11-26 01:54:06,486 | INFO     | cpuconsumptiontime: 329655 s
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | nevents: 1000
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | neventsw: 0
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | pid: 2951451
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | pgrp: 2951451
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | corecount: 9
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | event service: False
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | sizes: {0: 2284032, 1: 2284116, 2: 2284315, 13: 2284315, 24: 2284371, 33: 2284661, 35: 2284845, 74483: 2343558, 74484: 2343557, 74490: 2352612, 74491: 2352668, 745
[2025-11-25 20:54:43] 2025-11-26 01:54:06,487 | INFO     | --------------------------------------------------
[2025-11-25 20:54:43] 2025-11-26 01:54:06,488 | INFO     | 
[2025-11-25 20:54:43] 2025-11-26 01:54:06,488 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 20:54:43] 2025-11-26 01:54:06,560 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,561 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,561 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,561 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,561 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:54:43] 2025-11-26 01:54:06,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,563 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:54:43] 2025-11-26 01:54:06,563 | INFO     | job 6895386727 has completed (purged errors)
[2025-11-25 20:54:43] 2025-11-26 01:54:06,563 | INFO     | overall cleanup function is called
[2025-11-25 20:54:43] 2025-11-26 01:54:06,797 | INFO     | PID=2943519 has CPU usage=20.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 20:54:43] 2025-11-26 01:54:06,797 | INFO     | .. there are 43 such processes running
[2025-11-25 20:54:43] 2025-11-26 01:54:07,605 | INFO     | --- collectZombieJob: --- 10, [2951451]
[2025-11-25 20:54:43] 2025-11-26 01:54:07,605 | INFO     | zombie collector waiting for pid 2951451
[2025-11-25 20:54:43] 2025-11-26 01:54:07,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:54:43] 2025-11-26 01:54:07,606 | INFO     | collected zombie processes
[2025-11-25 20:54:43] 2025-11-26 01:54:07,606 | INFO     | will attempt to kill all subprocesses of pid=2951451
[2025-11-25 20:54:43] 2025-11-26 01:54:08,541 | INFO     | process IDs to be killed: [2951451] (in reverse order)
[2025-11-25 20:54:43] 2025-11-26 01:54:08,719 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:54:43] 2025-11-26 01:54:08,719 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:54:43] 2025-11-26 01:54:08,771 | INFO     | did not find any defunct processes belonging to 2951451
[2025-11-25 20:54:43] 2025-11-26 01:54:08,794 | INFO     | did not find any defunct processes belonging to 2951451
[2025-11-25 20:54:43] 2025-11-26 01:54:08,796 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:54:43] 2025-11-26 01:54:08,796 | INFO     | ready for new job
[2025-11-25 20:54:43] 2025-11-26 01:54:08,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:54:43] 2025-11-26 01:54:08,802 | INFO     | ***************************************
[2025-11-25 20:54:43] 2025-11-26 01:54:08,802 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:54:43] 2025-11-26 01:54:08,802 | INFO     | ***************************************
[2025-11-25 20:54:43] 2025-11-26 01:54:08,803 | INFO     | 
[2025-11-25 20:54:43] 2025-11-26 01:54:08,806 | INFO     | architecture information:
[2025-11-25 20:54:43] 2025-11-26 01:54:08,808 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:54:43] 2025-11-26 01:54:08,830 | INFO     | cat /etc/os-release:
[2025-11-25 20:54:43] NAME="CentOS Linux"
[2025-11-25 20:54:43] VERSION="7 (Core)"
[2025-11-25 20:54:43] ID="centos"
[2025-11-25 20:54:43] ID_LIKE="rhel fedora"
[2025-11-25 20:54:43] VERSION_ID="7"
[2025-11-25 20:54:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:54:43] ANSI_COLOR="0;31"
[2025-11-25 20:54:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:54:43] HOME_URL="https://www.centos.org/"
[2025-11-25 20:54:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:54:43] 
[2025-11-25 20:54:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:54:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:54:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:54:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:54:43] 
[2025-11-25 20:54:43] 2025-11-26 01:54:08,830 | INFO     | ***************************************
[2025-11-25 20:54:43] 2025-11-26 01:54:09,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 20:54:43] 2025-11-26 01:54:09,407 | INFO     | sufficient remaining disk space (71564263424 B)
[2025-11-25 20:54:43] 2025-11-26 01:54:09,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:54:43] 2025-11-26 01:54:09,407 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:54:43] 2025-11-26 01:54:09,407 | INFO     | update_server=False
[2025-11-25 20:54:43] 2025-11-26 01:54:09,408 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:54:43] 2025-11-26 01:54:09,408 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:54:43] 2025-11-26 01:54:09,408 | INFO     | aborting loop
[2025-11-25 20:54:43] 2025-11-26 01:54:09,570 | INFO     | all payload control threads have been joined
[2025-11-25 20:54:43] 2025-11-26 01:54:09,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:54:43] 2025-11-26 01:54:10,225 | INFO     | all data control threads have been joined
[2025-11-25 20:54:43] 2025-11-26 01:54:10,413 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:10,427 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:10,517 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:10,559 | INFO     | [job] validate thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:10,563 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:10,576 | INFO     | [payload] control thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:10,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:54:43] 2025-11-26 01:54:10,762 | INFO     | all job control threads have been joined
[2025-11-25 20:54:43] 2025-11-26 01:54:10,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:10,869 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:11,192 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:11,231 | INFO     | [data] control thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:11,397 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:11,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:54:43] 2025-11-26 01:54:11,600 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:11,695 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:11,771 | INFO     | [job] control thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:12,507 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:14,631 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:54:43] 2025-11-26 01:54:35,950 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:54:43] 2025-11-26 01:54:37,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140486495979328)>', '<ExcThread(monitor, started 140486006261504)>']
[2025-11-25 20:54:43] 2025-11-26 01:54:39,792 | INFO     | PID=2943519 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:54:43] 2025-11-26 01:54:39,792 | INFO     | .. there are 43 such processes running
[2025-11-25 20:54:43] 2025-11-26 01:54:39,792 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:54:43] 2025-11-26 01:54:39,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:54:43] 2025-11-26 01:54:39,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:54:43] 2025-11-26 01:54:39,793 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:54:43] 2025-11-26 01:54:39,793 | INFO     | [monitor] control thread has ended
[2025-11-25 20:54:43] 2025-11-26 01:54:42,513 | INFO     | all workflow threads have been joined
[2025-11-25 20:54:43] 2025-11-26 01:54:42,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:54:43] 2025-11-26 01:54:42,514 | INFO     | traces error code: 0
[2025-11-25 20:54:43] 2025-11-26 01:54:42,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:54:43] 2025-11-26 01:54:42,675 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:54:43] 2025-11-26 01:54:42,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:54:43] 2025-11-26 01:54:42,680 [wrapper] pilotpid: 2943519
[2025-11-25 20:54:43] 2025-11-26 01:54:42,707 [wrapper] Pilot exit status: 0
[2025-11-25 20:54:43] 2025-11-26 01:54:42,841 [wrapper] pandaids: 6895386727
[2025-11-25 20:54:43] 2025-11-26 01:54:43,058 [wrapper] cleanup supervisor_pilot 3269307 2943520
[2025-11-25 20:54:43] 2025-11-26 01:54:43,082 [wrapper] Test setup, not cleaning
[2025-11-25 20:54:43] 2025-11-26 01:54:43,112 [wrapper] apfmon messages muted
[2025-11-25 20:54:43] 2025-11-26 01:54:43,123 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:54:43] 2025-11-26 01:54:43,126 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:54:43]  *** Error codes and diagnostics ***
[2025-11-25 20:54:43]     "exeErrorCode": 0,
[2025-11-25 20:54:43]     "exeErrorDiag": "",
[2025-11-25 20:54:43]     "pilotErrorCode": 0,
[2025-11-25 20:54:43]     "pilotErrorDiag": "",
[2025-11-25 20:54:43]  *** Listing of results directory ***
[2025-11-25 20:54:43] total 1326480
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:52 queuedata.json
[2025-11-25 20:54:43] -rwx------. 1 boincer umatlas     36292 Nov 24 00:53 runpilot2-wrapper.sh
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:54:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:10 run_atlas
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:10 job.xml
[2025-11-25 20:54:43] -rw-r--r--. 2 boincer umatlas 409435273 Nov 25 00:10 EVNT.47483658._001252.pool.root.1
[2025-11-25 20:54:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-25 20:54:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:10 shared
[2025-11-25 20:54:43] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 00:10 input.tar.gz
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:10 boinc_lockfile
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:10 pandaJob.out
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas        57 Nov 25 00:10 setup.sh.local
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas    991801 Nov 25 00:11 agis_schedconf.cvmfs.json
[2025-11-25 20:54:43] drwx------. 5 boincer umatlas      4096 Nov 25 00:11 pilot3
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas       533 Nov 25 20:40 boinc_task_state.xml
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas      6614 Nov 25 20:46 init_data.xml
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas 921870475 Nov 25 20:53 HITS.47556149._002387.pool.root.1
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas      1059 Nov 25 20:53 memory_monitor_summary.json
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:53 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas   2408750 Nov 25 20:53 log.47556149._002387.job.log.tgz.1
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas        95 Nov 25 20:53 pilot_heartbeat.json
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas      8628 Nov 25 20:54 heartbeat.json
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas      4824 Nov 25 20:54 pilotlog.txt
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas   9130262 Nov 25 20:54 log.47556149._002387.job.log.1
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas       353 Nov 25 20:54 output.list
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:54 runtime_log
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas  11560960 Nov 25 20:54 result.tar.gz
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 20:54 runtime_log.err
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas       658 Nov 25 20:54 9O5KDmygeh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxwIKDm5wAkNm.diag
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas        29 Nov 25 20:54 wrapper_checkpoint.txt
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:54 boinc_mmap_file
[2025-11-25 20:54:43] -rw-r--r--. 1 boincer umatlas     21365 Nov 25 20:54 stderr.txt
[2025-11-25 20:54:43] HITS file was successfully produced:
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas 921870475 Nov 25 20:53 shared/HITS.pool.root.1
[2025-11-25 20:54:43]  *** Contents of shared directory: ***
[2025-11-25 20:54:43] total 1312004
[2025-11-25 20:54:43] -rw-r--r--. 2 boincer umatlas 409435273 Nov 25 00:10 ATLAS.root_0
[2025-11-25 20:54:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:10 start_atlas.sh
[2025-11-25 20:54:43] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 00:10 input.tar.gz
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas 921870475 Nov 25 20:53 HITS.pool.root.1
[2025-11-25 20:54:43] -rw-------. 1 boincer umatlas  11560960 Nov 25 20:54 result.tar.gz
20:54:45 (2937473): run_atlas exited; CPU time 332959.429008
20:54:45 (2937473): called boinc_finish(0)

</stderr_txt>
]]>

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