Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:57 (3554626): wrapper (7.7.26015): starting
00:04:57 (3554626): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:04:57] Arguments: --nthreads 12
[2025-11-25 00:04:57] Threads: 12
[2025-11-25 00:04:57] Checking for CVMFS
[2025-11-25 00:04:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:00] 2.13.2.0 6307 31011 298248 153270 2 372 28475671 40960001 12632 16776704 0 45671140 99.753 26511074 39594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:05:00] CVMFS is ok
[2025-11-25 00:05:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:00] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:00] Checking for apptainer binary...
[2025-11-25 00:05:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:00] Running /usr/bin/apptainer --version
[2025-11-25 00:05:00] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:01] c-206-39.aglt2.org
[2025-11-25 00:05:01] apptainer works
[2025-11-25 00:05:01] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:05:01] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:05:01] Starting ATLAS job with PandaID=6895356786
[2025-11-25 00:05:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:20:03 (3554626): BOINC client no longer exists - exiting
17:20:03 (3554626): timer handler: client dead, exiting
17:28:23 (1542128): wrapper (7.7.26015): starting
17:28:23 (1542128): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 17:28:23] Arguments: --nthreads 9
[2025-11-25 17:28:23] Threads: 9
[2025-11-25 17:28:23] This job has been restarted, cleaning up previous attempt
[2025-11-25 17:28:23] Checking for CVMFS
[2025-11-25 17:28:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:28:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:28:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:28:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:28:23] 2.13.2.0 6307 32055 287968 153300 1 161 38347246 40960000 8863 16776704 0 47881841 99.743 28177565 39001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 17:28:23] CVMFS is ok
[2025-11-25 17:28:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:28:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:28:23] Further information can be found at the LHC@home message board.
[2025-11-25 17:28:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:28:23] Checking for apptainer binary...
[2025-11-25 17:28:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:28:23] Running /usr/bin/apptainer --version
[2025-11-25 17:28:24] apptainer version 1.4.4-1.el9
[2025-11-25 17:28:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:28:24] c-206-39.aglt2.org
[2025-11-25 17:28:24] apptainer works
[2025-11-25 17:28:24] Set ATHENA_PROC_NUMBER=9
[2025-11-25 17:28:24] Set ATHENA_CORE_NUMBER=9
[2025-11-25 17:28:24] Starting ATLAS job with PandaID=6895356786
[2025-11-25 17:28:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:20:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:20:40] 2025-11-27 10:19:31,222 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:20:40] 2025-11-27 10:19:31,226 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3252.242625
[2025-11-27 05:20:40] 2025-11-27 10:19:31,236 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895356786/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,236 | INFO     | extracted standard info from prmon json
[2025-11-27 05:20:40] 2025-11-27 10:19:31,236 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:20:40] 2025-11-27 10:19:31,236 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:20:40] 2025-11-27 10:19:31,263 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:20:40] 2025-11-27 10:19:31,266 | INFO     | sum of square deviations: 2933617163131.394
[2025-11-27 05:20:40] 2025-11-27 10:19:31,348 | INFO     | sum of deviations: 11198217866767.1
[2025-11-27 05:20:40] 2025-11-27 10:19:31,348 | INFO     | mean x: 1764174232.399527
[2025-11-27 05:20:40] 2025-11-27 10:19:31,349 | INFO     | mean y: 3128256.4661938534
[2025-11-27 05:20:40] 2025-11-27 10:19:31,349 | INFO     | intersect: -6731086302.143436
[2025-11-27 05:20:40] 2025-11-27 10:19:31,350 | INFO     | chi2: 5.4972575574656
[2025-11-27 05:20:40] 2025-11-27 10:19:31,352 | INFO     | sum of square deviations: 2912863708062.7783
[2025-11-27 05:20:40] 2025-11-27 10:19:31,437 | INFO     | sum of deviations: 11783181852205.176
[2025-11-27 05:20:40] 2025-11-27 10:19:31,438 | INFO     | mean x: 1764174079.9123223
[2025-11-27 05:20:40] 2025-11-27 10:19:31,438 | INFO     | mean y: 3132553.0440758294
[2025-11-27 05:20:40] 2025-11-27 10:19:31,438 | INFO     | intersect: -7133344153.714915
[2025-11-27 05:20:40] 2025-11-27 10:19:31,439 | INFO     | chi2: 3.4856912413087136
[2025-11-27 05:20:40] 2025-11-27 10:19:31,440 | INFO     | current chi2=3.4856912413087136 (change=36.592178829697744 %)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,442 | INFO     | sum of square deviations: 2892207751595.7065
[2025-11-27 05:20:40] 2025-11-27 10:19:31,518 | INFO     | time since job start (129056s) is within the limit (172800.0s)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,520 | INFO     | sum of deviations: 11887552571503.906
[2025-11-27 05:20:40] 2025-11-27 10:19:31,521 | INFO     | mean x: 1764173927.422803
[2025-11-27 05:20:40] 2025-11-27 10:19:31,521 | INFO     | mean y: 3133322.427078385
[2025-11-27 05:20:40] 2025-11-27 10:19:31,521 | INFO     | intersect: -7247974519.3054
[2025-11-27 05:20:40] 2025-11-27 10:19:31,523 | INFO     | chi2: 3.2663366333431734
[2025-11-27 05:20:40] 2025-11-27 10:19:31,523 | INFO     | current chi2=3.2663366333431734 (change=6.293001668248241 %)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,523 | INFO     | right removable region: 2104
[2025-11-27 05:20:40] 2025-11-27 10:19:31,525 | INFO     | sum of square deviations: 2912856870643.602
[2025-11-27 05:20:40] 2025-11-27 10:19:31,609 | INFO     | sum of deviations: 10529454517185.184
[2025-11-27 05:20:40] 2025-11-27 10:19:31,609 | INFO     | mean x: 1764174384.9118483
[2025-11-27 05:20:40] 2025-11-27 10:19:31,609 | INFO     | mean y: 3133166.861137441
[2025-11-27 05:20:40] 2025-11-27 10:19:31,609 | INFO     | intersect: -6374040436.663053
[2025-11-27 05:20:40] 2025-11-27 10:19:31,611 | INFO     | chi2: 3.0845994920812183
[2025-11-27 05:20:40] 2025-11-27 10:19:31,611 | INFO     | current chi2=3.0845994920812183 (change=43.888394170432306 %)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,613 | INFO     | sum of square deviations: 2892195105811.7007
[2025-11-27 05:20:40] 2025-11-27 10:19:31,691 | INFO     | sum of deviations: 10300647329848.092
[2025-11-27 05:20:40] 2025-11-27 10:19:31,691 | INFO     | mean x: 1764174537.422803
[2025-11-27 05:20:40] 2025-11-27 10:19:31,691 | INFO     | mean y: 3134855.6190023753
[2025-11-27 05:20:40] 2025-11-27 10:19:31,691 | INFO     | intersect: -6280030378.211285
[2025-11-27 05:20:40] 2025-11-27 10:19:31,693 | INFO     | chi2: 2.951776935054295
[2025-11-27 05:20:40] 2025-11-27 10:19:31,693 | INFO     | current chi2=2.951776935054295 (change=4.305990368211667 %)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,693 | INFO     | left removable region: 20
[2025-11-27 05:20:40] 2025-11-27 10:19:31,695 | INFO     | sum of square deviations: 2806496461265.7876
[2025-11-27 05:20:40] 2025-11-27 10:19:31,769 | INFO     | sum of deviations: 10727846739025.91
[2025-11-27 05:20:40] 2025-11-27 10:19:31,769 | INFO     | mean x: 1764174506.9673705
[2025-11-27 05:20:40] 2025-11-27 10:19:31,769 | INFO     | mean y: 3141976.8958733208
[2025-11-27 05:20:40] 2025-11-27 10:19:31,769 | INFO     | intersect: -6740423886.396406
[2025-11-27 05:20:40] 2025-11-27 10:19:31,771 | INFO     | chi2: 0.6709004150239346
[2025-11-27 05:20:40] 2025-11-27 10:19:31,771 | INFO     | current memory leak: 3.82 B/s (using 2084 data points, chi2=0.67)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | could have reported an average CPU frequency of 3230 MHz (73 samples)
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | ..............................
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . Timing measurements:
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . get job = 0 s
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . initial setup = 2 s
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . payload setup = 9 s
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . stage-in = 0 s
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . payload execution = 129014 s
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . stage-out = 5 s
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | . log creation = 1 s
[2025-11-27 05:20:40] 2025-11-27 10:19:31,773 | INFO     | ..............................
[2025-11-27 05:20:40] 2025-11-27 10:19:32,242 | INFO     | 
[2025-11-27 05:20:40] 2025-11-27 10:19:32,243 | INFO     | job summary report
[2025-11-27 05:20:40] 2025-11-27 10:19:32,243 | INFO     | --------------------------------------------------
[2025-11-27 05:20:40] 2025-11-27 10:19:32,243 | INFO     | PanDA job id: 6895356786
[2025-11-27 05:20:40] 2025-11-27 10:19:32,243 | INFO     | task id: 47556137
[2025-11-27 05:20:40] 2025-11-27 10:19:32,243 | INFO     | errors: (none)
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | pilot state: finished 
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | transexitcode: 0
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | exeerrorcode: 0
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | exeerrordiag: 
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | exitcode: 0
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | exitmsg: OK
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | cpuconsumptiontime: 202864 s
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | nevents: 1000
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | neventsw: 0
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | pid: 1572718
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | pgrp: 1572718
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | corecount: 9
[2025-11-27 05:20:40] 2025-11-27 10:19:32,244 | INFO     | event service: False
[2025-11-27 05:20:40] 2025-11-27 10:19:32,245 | INFO     | sizes: {0: 2284315, 4: 2284577, 11: 2284605, 129027: 2370513, 129028: 2370512, 129034: 2379746, 129041: 2379936}
[2025-11-27 05:20:40] 2025-11-27 10:19:32,245 | INFO     | --------------------------------------------------
[2025-11-27 05:20:40] 2025-11-27 10:19:32,245 | INFO     | 
[2025-11-27 05:20:40] 2025-11-27 10:19:32,245 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 05:20:40] 2025-11-27 10:19:32,328 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,329 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,330 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:20:40] 2025-11-27 10:19:32,330 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,330 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:20:40] 2025-11-27 10:19:32,330 | INFO     | job 6895356786 has completed (purged errors)
[2025-11-27 05:20:40] 2025-11-27 10:19:32,330 | INFO     | overall cleanup function is called
[2025-11-27 05:20:40] 2025-11-27 10:19:33,449 | INFO     | --- collectZombieJob: --- 10, [1572718]
[2025-11-27 05:20:40] 2025-11-27 10:19:33,449 | INFO     | zombie collector waiting for pid 1572718
[2025-11-27 05:20:40] 2025-11-27 10:19:33,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:20:40] 2025-11-27 10:19:33,449 | INFO     | collected zombie processes
[2025-11-27 05:20:40] 2025-11-27 10:19:33,449 | INFO     | will attempt to kill all subprocesses of pid=1572718
[2025-11-27 05:20:40] 2025-11-27 10:19:33,708 | INFO     | process IDs to be killed: [1572718] (in reverse order)
[2025-11-27 05:20:40] 2025-11-27 10:19:33,831 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:20:40] 2025-11-27 10:19:33,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:20:40] 2025-11-27 10:19:33,858 | INFO     | did not find any defunct processes belonging to 1572718
[2025-11-27 05:20:40] 2025-11-27 10:19:33,873 | INFO     | did not find any defunct processes belonging to 1572718
[2025-11-27 05:20:40] 2025-11-27 10:19:33,874 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:20:40] 2025-11-27 10:19:33,874 | INFO     | ready for new job
[2025-11-27 05:20:40] 2025-11-27 10:19:33,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:20:40] 2025-11-27 10:19:33,884 | INFO     | ***************************************
[2025-11-27 05:20:40] 2025-11-27 10:19:33,884 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:20:40] 2025-11-27 10:19:33,884 | INFO     | ***************************************
[2025-11-27 05:20:40] 2025-11-27 10:19:33,884 | INFO     | 
[2025-11-27 05:20:40] 2025-11-27 10:19:33,888 | INFO     | architecture information:
[2025-11-27 05:20:40] 2025-11-27 10:19:33,888 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:20:40] 2025-11-27 10:19:33,905 | INFO     | cat /etc/os-release:
[2025-11-27 05:20:40] NAME="CentOS Linux"
[2025-11-27 05:20:40] VERSION="7 (Core)"
[2025-11-27 05:20:40] ID="centos"
[2025-11-27 05:20:40] ID_LIKE="rhel fedora"
[2025-11-27 05:20:40] VERSION_ID="7"
[2025-11-27 05:20:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:20:40] ANSI_COLOR="0;31"
[2025-11-27 05:20:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:20:40] HOME_URL="https://www.centos.org/"
[2025-11-27 05:20:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:20:40] 
[2025-11-27 05:20:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:20:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:20:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:20:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:20:40] 
[2025-11-27 05:20:40] 2025-11-27 10:19:33,905 | INFO     | ***************************************
[2025-11-27 05:20:40] 2025-11-27 10:19:34,408 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 05:20:40] 2025-11-27 10:19:34,596 | INFO     | sufficient remaining disk space (77428948992 B)
[2025-11-27 05:20:40] 2025-11-27 10:19:34,596 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:20:40] 2025-11-27 10:19:34,596 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:20:40] 2025-11-27 10:19:34,596 | INFO     | update_server=False
[2025-11-27 05:20:40] 2025-11-27 10:19:34,596 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:20:40] 2025-11-27 10:19:34,826 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:20:40] 2025-11-27 10:19:34,826 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:20:40] 2025-11-27 10:19:34,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:20:40] 2025-11-27 10:19:34,826 | INFO     | will abort loop
[2025-11-27 05:20:40] 2025-11-27 10:19:35,068 | INFO     | all job control threads have been joined
[2025-11-27 05:20:40] 2025-11-27 10:19:35,465 | INFO     | all data control threads have been joined
[2025-11-27 05:20:40] 2025-11-27 10:19:35,602 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:35,606 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:35,751 | INFO     | [job] validate thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:35,832 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:35,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:20:40] 2025-11-27 10:19:36,014 | INFO     | all payload control threads have been joined
[2025-11-27 05:20:40] 2025-11-27 10:19:36,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:20:40] 2025-11-27 10:19:36,051 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,073 | INFO     | [job] control thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,329 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,391 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,392 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,470 | INFO     | [data] control thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,665 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:36,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:20:40] 2025-11-27 10:19:37,020 | INFO     | [payload] control thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:37,885 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:37,902 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:19:40,033 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:20:40] 2025-11-27 10:20:05,066 | INFO     | PID=1553274 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:20:40] 2025-11-27 10:20:05,068 | INFO     | .. there are 15 such processes running
[2025-11-27 05:20:40] 2025-11-27 10:20:05,068 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:20:40] 2025-11-27 10:20:05,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:20:40] 2025-11-27 10:20:05,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:20:40] 2025-11-27 10:20:31,829 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:20:40] 2025-11-27 10:20:32,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140255432632128)>', '<ExcThread(monitor, started 140255067875072)>']
[2025-11-27 05:20:40] 2025-11-27 10:20:33,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:20:40] 2025-11-27 10:20:33,276 | INFO     | [monitor] control thread has ended
[2025-11-27 05:20:40] 2025-11-27 10:20:37,990 | INFO     | all workflow threads have been joined
[2025-11-27 05:20:40] 2025-11-27 10:20:37,990 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:20:40] 2025-11-27 10:20:37,990 | INFO     | traces error code: 0
[2025-11-27 05:20:40] 2025-11-27 10:20:37,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:20:40] 2025-11-27 10:20:40,283 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:20:40] 2025-11-27 10:20:40,291 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:20:40] 2025-11-27 10:20:40,295 [wrapper] pilotpid: 1553274
[2025-11-27 05:20:40] 2025-11-27 10:20:40,298 [wrapper] Pilot exit status: 0
[2025-11-27 05:20:40] 2025-11-27 10:20:40,410 [wrapper] pandaids: 6895356786 6895356786
[2025-11-27 05:20:40] 2025-11-27 10:20:40,491 [wrapper] cleanup supervisor_pilot 2673474 1553275
[2025-11-27 05:20:40] 2025-11-27 10:20:40,496 [wrapper] Test setup, not cleaning
[2025-11-27 05:20:40] 2025-11-27 10:20:40,519 [wrapper] apfmon messages muted
[2025-11-27 05:20:40] 2025-11-27 10:20:40,524 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:20:40] 2025-11-27 10:20:40,531 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:20:40]  *** Error codes and diagnostics ***
[2025-11-27 05:20:40]     "exeErrorCode": 0,
[2025-11-27 05:20:40]     "exeErrorDiag": "",
[2025-11-27 05:20:40]     "pilotErrorCode": 0,
[2025-11-27 05:20:40]     "pilotErrorDiag": "",
[2025-11-27 05:20:40]  *** Listing of results directory ***
[2025-11-27 05:20:40] total 1745652
[2025-11-27 05:20:40] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:21 queuedata.json
[2025-11-27 05:20:40] -rwx------. 1 boincer umatlas     36292 Nov 23 06:22 runpilot2-wrapper.sh
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:20:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-27 05:20:40] -rw-r--r--. 3 boincer umatlas 410123858 Nov 25 00:04 EVNT.47483658._000702.pool.root.1
[2025-11-27 05:20:40] -rw-r--r--. 3 boincer umatlas 410123858 Nov 25 00:04 ATLAS.root_0
[2025-11-27 05:20:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-27 05:20:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-27 05:20:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:04 input.tar.gz
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 17:28 pandaJob.out
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas        57 Nov 25 17:28 setup.sh.local
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas    991877 Nov 25 17:28 agis_schedconf.cvmfs.json
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas       534 Nov 27 05:08 boinc_task_state.xml
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas 924753361 Nov 27 05:18 HITS.47556137._006980.pool.root.1
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas      1062 Nov 27 05:19 memory_monitor_summary.json
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas        96 Nov 27 05:19 pilot_heartbeat.json
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas   3034801 Nov 27 05:19 log.47556137._006980.job.log.tgz.1
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas      8602 Nov 27 05:19 heartbeat.json
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas      6904 Nov 27 05:20 init_data.xml
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas      5010 Nov 27 05:20 pilotlog.txt
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:20 boinc_mmap_file
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas        30 Nov 27 05:20 wrapper_checkpoint.txt
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas  16277154 Nov 27 05:20 log.47556137._006980.job.log.1
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas       353 Nov 27 05:20 output.list
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:20 runtime_log
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas  19333120 Nov 27 05:20 result.tar.gz
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas      9429 Nov 27 05:20 runtime_log.err
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas       791 Nov 27 05:20 D8vMDm2LNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgpKKDmf4N7ym.diag
[2025-11-27 05:20:40] -rw-r--r--. 1 boincer umatlas     23582 Nov 27 05:20 stderr.txt
[2025-11-27 05:20:40] HITS file was successfully produced:
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas 924753361 Nov 27 05:18 shared/HITS.pool.root.1
[2025-11-27 05:20:40]  *** Contents of shared directory: ***
[2025-11-27 05:20:40] total 1323076
[2025-11-27 05:20:40] -rw-r--r--. 3 boincer umatlas 410123858 Nov 25 00:04 ATLAS.root_0
[2025-11-27 05:20:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-27 05:20:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:04 input.tar.gz
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas 924753361 Nov 27 05:18 HITS.pool.root.1
[2025-11-27 05:20:40] -rw-------. 1 boincer umatlas  19333120 Nov 27 05:20 result.tar.gz
05:21:02 (1542128): run_atlas exited; CPU time 202996.263507
05:21:02 (1542128): called boinc_finish(0)

</stderr_txt>
]]>

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