Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:15 (2925604): wrapper (7.7.26015): starting
00:05:15 (2925604): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:05:15] Arguments: --nthreads 12
[2025-11-25 00:05:15] Threads: 12
[2025-11-25 00:05:15] Checking for CVMFS
[2025-11-25 00:05:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:19] 2.13.2.0 9388 31962 184188 153270 2 64 27564265 39288832 8861 16776704 0 22857050 99.641 19814389 38298 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:05:19] CVMFS is ok
[2025-11-25 00:05:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:19] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:19] Checking for apptainer binary...
[2025-11-25 00:05:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:19] Running /usr/bin/apptainer --version
[2025-11-25 00:05:19] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:21] c-210-25.aglt2.org
[2025-11-25 00:05:21] apptainer works
[2025-11-25 00:05:21] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:05:21] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:05:21] Starting ATLAS job with PandaID=6895367207
[2025-11-25 00:05:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:04:25 (512443): wrapper (7.7.26015): starting
20:04:25 (512443): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 20:04:25] Arguments: --nthreads 9
[2025-11-25 20:04:25] Threads: 9
[2025-11-25 20:04:25] This job has been restarted, cleaning up previous attempt
[2025-11-25 20:04:25] Checking for CVMFS
[2025-11-25 20:04:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:04:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:04:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:04:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:04:29] 2.13.2.0 9388 33161 187632 153303 0 524 29714165 39288833 7830 16776704 0 24256305 99.620 24545708 40428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 20:04:29] CVMFS is ok
[2025-11-25 20:04:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:04:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:04:29] Further information can be found at the LHC@home message board.
[2025-11-25 20:04:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:04:29] Checking for apptainer binary...
[2025-11-25 20:04:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:04:29] Running /usr/bin/apptainer --version
[2025-11-25 20:04:30] apptainer version 1.4.4-1.el9
[2025-11-25 20:04:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:04:30] c-210-25.aglt2.org
[2025-11-25 20:04:30] apptainer works
[2025-11-25 20:04:30] Set ATHENA_PROC_NUMBER=9
[2025-11-25 20:04:30] Set ATHENA_CORE_NUMBER=9
[2025-11-25 20:04:31] Starting ATLAS job with PandaID=6895367207
[2025-11-25 20:04:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:56:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:56:18] 2025-11-27 04:55:39,285 | INFO     | preparing for final server update for job 6895367207 in state='finished'
[2025-11-26 23:56:18] 2025-11-27 04:55:39,286 | INFO     | this job has now completed (state=finished)
[2025-11-26 23:56:18] 2025-11-27 04:55:39,286 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 23:56:18] 2025-11-27 04:55:39,286 | INFO     | log transfer has been attempted: DONE
[2025-11-26 23:56:18] 2025-11-27 04:55:39,286 | INFO     | job 6895367207 has finished - writing final server update
[2025-11-26 23:56:18] 2025-11-27 04:55:39,287 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 23:56:18] 2025-11-27 04:55:39,288 | INFO     | executing command: lscpu
[2025-11-26 23:56:18] 2025-11-27 04:55:39,339 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 23:56:18] 2025-11-27 04:55:40,865 | INFO     | time since job start (100180s) is within the limit (172800.0s)
[2025-11-26 23:56:18] 2025-11-27 04:55:41,456 | INFO     | monitor loop #6350: job 0:6895367207 is in state 'finished'
[2025-11-26 23:56:18] 2025-11-27 04:55:41,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:56:18] 2025-11-27 04:55:42,872 | INFO     | time since job start (100182s) is within the limit (172800.0s)
[2025-11-26 23:56:18] 2025-11-27 04:55:43,960 | INFO     | monitor loop #6351: job 0:6895367207 is in state 'finished'
[2025-11-26 23:56:18] 2025-11-27 04:55:43,960 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:56:18] 2025-11-27 04:55:44,879 | INFO     | time since job start (100184s) is within the limit (172800.0s)
[2025-11-26 23:56:18] 2025-11-27 04:55:45,887 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:56:18] 2025-11-27 04:55:45,894 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.171325
[2025-11-26 23:56:18] 2025-11-27 04:55:45,902 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895367207/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:56:18] 2025-11-27 04:55:45,903 | INFO     | extracted standard info from prmon json
[2025-11-26 23:56:18] 2025-11-27 04:55:45,903 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:56:18] 2025-11-27 04:55:45,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:56:18] 2025-11-27 04:55:45,937 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:56:18] 2025-11-27 04:55:45,942 | INFO     | sum of square deviations: 1365215617520.166
[2025-11-26 23:56:18] 2025-11-27 04:55:46,020 | INFO     | sum of deviations: 8403228279636.303
[2025-11-26 23:56:18] 2025-11-27 04:55:46,020 | INFO     | mean x: 1764169321.9456985
[2025-11-26 23:56:18] 2025-11-27 04:55:46,020 | INFO     | mean y: 3060570.441732764
[2025-11-26 23:56:18] 2025-11-27 04:55:46,020 | INFO     | intersect: -10855823071.08086
[2025-11-26 23:56:18] 2025-11-27 04:55:46,023 | INFO     | chi2: 18.322325739229537
[2025-11-26 23:56:18] 2025-11-27 04:55:46,026 | INFO     | sum of square deviations: 1352760919109.5864
[2025-11-26 23:56:18] 2025-11-27 04:55:46,134 | INFO     | sum of deviations: 8977927430942.832
[2025-11-26 23:56:18] 2025-11-27 04:55:46,134 | INFO     | mean x: 1764169169.4577723
[2025-11-26 23:56:18] 2025-11-27 04:55:46,134 | INFO     | mean y: 3067607.0336597306
[2025-11-26 23:56:18] 2025-11-27 04:55:46,135 | INFO     | intersect: -11705270914.250525
[2025-11-26 23:56:18] 2025-11-27 04:55:46,137 | INFO     | chi2: 15.371400369845468
[2025-11-26 23:56:18] 2025-11-27 04:55:46,137 | INFO     | current chi2=15.371400369845468 (change=16.105626607575843 %)
[2025-11-26 23:56:18] 2025-11-27 04:55:46,137 | INFO     | right removable region: 1633
[2025-11-26 23:56:18] 2025-11-27 04:55:46,140 | INFO     | sum of square deviations: 1352757173967.4136
[2025-11-26 23:56:18] 2025-11-27 04:55:46,217 | INFO     | sum of deviations: 7684640849872.733
[2025-11-26 23:56:18] 2025-11-27 04:55:46,217 | INFO     | mean x: 1764169474.4565485
[2025-11-26 23:56:18] 2025-11-27 04:55:46,217 | INFO     | mean y: 3069366.418604651
[2025-11-26 23:56:18] 2025-11-27 04:55:46,218 | INFO     | intersect: -10018691427.314121
[2025-11-26 23:56:18] 2025-11-27 04:55:46,220 | INFO     | chi2: 13.784490321109446
[2025-11-26 23:56:18] 2025-11-27 04:55:46,220 | INFO     | current chi2=13.784490321109446 (change=24.76669983223925 %)
[2025-11-26 23:56:18] 2025-11-27 04:55:46,220 | INFO     | left removable region: 10
[2025-11-26 23:56:18] 2025-11-27 04:55:46,223 | INFO     | sum of square deviations: 1325620090038.5535
[2025-11-26 23:56:18] 2025-11-27 04:55:46,293 | INFO     | sum of deviations: 7714642151997.518
[2025-11-26 23:56:18] 2025-11-27 04:55:46,294 | INFO     | mean x: 1764169443.983364
[2025-11-26 23:56:18] 2025-11-27 04:55:46,294 | INFO     | mean y: 3084595.0191004314
[2025-11-26 23:56:18] 2025-11-27 04:55:46,294 | INFO     | intersect: -10263760376.698446
[2025-11-26 23:56:18] 2025-11-27 04:55:46,296 | INFO     | chi2: 7.586221817917954
[2025-11-26 23:56:18] 2025-11-27 04:55:46,297 | INFO     | current memory leak: 5.82 B/s (using 1623 data points, chi2=7.59)
[2025-11-26 23:56:18] 2025-11-27 04:55:46,299 | INFO     | could have reported an average CPU frequency of 2600 MHz (58 samples)
[2025-11-26 23:56:18] 2025-11-27 04:55:46,300 | INFO     | ..............................
[2025-11-26 23:56:18] 2025-11-27 04:55:46,300 | INFO     | . Timing measurements:
[2025-11-26 23:56:18] 2025-11-27 04:55:46,300 | INFO     | . get job = 0 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,300 | INFO     | . initial setup = 9 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,300 | INFO     | . payload setup = 61 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,300 | INFO     | . stage-in = 0 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,300 | INFO     | . payload execution = 100002 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,301 | INFO     | . stage-out = 5 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,301 | INFO     | . log creation = 1 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,301 | INFO     | ..............................
[2025-11-26 23:56:18] 2025-11-27 04:55:46,537 | INFO     | 
[2025-11-26 23:56:18] 2025-11-27 04:55:46,537 | INFO     | job summary report
[2025-11-26 23:56:18] 2025-11-27 04:55:46,537 | INFO     | --------------------------------------------------
[2025-11-26 23:56:18] 2025-11-27 04:55:46,537 | INFO     | PanDA job id: 6895367207
[2025-11-26 23:56:18] 2025-11-27 04:55:46,537 | INFO     | task id: 47556137
[2025-11-26 23:56:18] 2025-11-27 04:55:46,537 | INFO     | errors: (none)
[2025-11-26 23:56:18] 2025-11-27 04:55:46,537 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | pilot state: finished 
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | transexitcode: 0
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | exeerrorcode: 0
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | exeerrordiag: 
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | exitcode: 0
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | exitmsg: OK
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | cpuconsumptiontime: 304170 s
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | nevents: 1000
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | neventsw: 0
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | pid: 524812
[2025-11-26 23:56:18] 2025-11-27 04:55:46,538 | INFO     | pgrp: 524812
[2025-11-26 23:56:18] 2025-11-27 04:55:46,539 | INFO     | corecount: 9
[2025-11-26 23:56:18] 2025-11-27 04:55:46,539 | INFO     | event service: False
[2025-11-26 23:56:18] 2025-11-27 04:55:46,539 | INFO     | sizes: {0: 2284087, 1: 2284143, 2: 2284171, 3: 2284398, 4: 2284398, 15: 2284426, 26: 2284582, 37: 2284610, 47: 2284638, 49: 2284956, 58: 2284984, 100067: 2358281, 
[2025-11-26 23:56:18] 2025-11-27 04:55:46,539 | INFO     | --------------------------------------------------
[2025-11-26 23:56:18] 2025-11-27 04:55:46,539 | INFO     | 
[2025-11-26 23:56:18] 2025-11-27 04:55:46,539 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 23:56:18] 2025-11-27 04:55:46,612 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,614 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:56:18] 2025-11-27 04:55:46,615 | INFO     | job 6895367207 has completed (purged errors)
[2025-11-26 23:56:18] 2025-11-27 04:55:46,615 | INFO     | overall cleanup function is called
[2025-11-26 23:56:18] 2025-11-27 04:55:47,633 | INFO     | --- collectZombieJob: --- 10, [524812]
[2025-11-26 23:56:18] 2025-11-27 04:55:47,633 | INFO     | zombie collector waiting for pid 524812
[2025-11-26 23:56:18] 2025-11-27 04:55:47,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:56:18] 2025-11-27 04:55:47,634 | INFO     | collected zombie processes
[2025-11-26 23:56:18] 2025-11-27 04:55:47,634 | INFO     | will attempt to kill all subprocesses of pid=524812
[2025-11-26 23:56:18] 2025-11-27 04:55:48,007 | INFO     | process IDs to be killed: [524812] (in reverse order)
[2025-11-26 23:56:18] 2025-11-27 04:55:48,227 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:56:18] 2025-11-27 04:55:48,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:56:18] 2025-11-27 04:55:48,239 | INFO     | did not find any defunct processes belonging to 524812
[2025-11-26 23:56:18] 2025-11-27 04:55:48,247 | INFO     | did not find any defunct processes belonging to 524812
[2025-11-26 23:56:18] 2025-11-27 04:55:48,249 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:56:18] 2025-11-27 04:55:48,249 | INFO     | ready for new job
[2025-11-26 23:56:18] 2025-11-27 04:55:48,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:56:18] 2025-11-27 04:55:48,257 | INFO     | ***************************************
[2025-11-26 23:56:18] 2025-11-27 04:55:48,258 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:56:18] 2025-11-27 04:55:48,258 | INFO     | ***************************************
[2025-11-26 23:56:18] 2025-11-27 04:55:48,258 | INFO     | 
[2025-11-26 23:56:18] 2025-11-27 04:55:48,260 | INFO     | architecture information:
[2025-11-26 23:56:18] 2025-11-27 04:55:48,270 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:56:18] 2025-11-27 04:55:48,308 | INFO     | cat /etc/os-release:
[2025-11-26 23:56:18] NAME="CentOS Linux"
[2025-11-26 23:56:18] VERSION="7 (Core)"
[2025-11-26 23:56:18] ID="centos"
[2025-11-26 23:56:18] ID_LIKE="rhel fedora"
[2025-11-26 23:56:18] VERSION_ID="7"
[2025-11-26 23:56:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:56:18] ANSI_COLOR="0;31"
[2025-11-26 23:56:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:56:18] HOME_URL="https://www.centos.org/"
[2025-11-26 23:56:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:56:18] 
[2025-11-26 23:56:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:56:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:56:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:56:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:56:18] 
[2025-11-26 23:56:18] 2025-11-27 04:55:48,308 | INFO     | ***************************************
[2025-11-26 23:56:18] 2025-11-27 04:55:48,812 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 23:56:18] 2025-11-27 04:55:48,888 | INFO     | sufficient remaining disk space (49599741952 B)
[2025-11-26 23:56:18] 2025-11-27 04:55:48,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:56:18] 2025-11-27 04:55:48,888 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:56:18] 2025-11-27 04:55:48,889 | INFO     | update_server=False
[2025-11-26 23:56:18] 2025-11-27 04:55:48,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:56:18] 2025-11-27 04:55:48,989 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 23:56:18] 2025-11-27 04:55:48,989 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 23:56:18] 2025-11-27 04:55:48,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:56:18] 2025-11-27 04:55:48,989 | INFO     | will abort loop
[2025-11-26 23:56:18] 2025-11-27 04:55:49,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:56:18] 2025-11-27 04:55:49,086 | INFO     | all payload control threads have been joined
[2025-11-26 23:56:18] 2025-11-27 04:55:49,196 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:56:18] 2025-11-27 04:55:49,288 | INFO     | all job control threads have been joined
[2025-11-26 23:56:18] 2025-11-27 04:55:49,476 | INFO     | all data control threads have been joined
[2025-11-26 23:56:18] 2025-11-27 04:55:49,895 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:49,996 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,075 | INFO     | [job] validate thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,075 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,093 | INFO     | [payload] control thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,294 | INFO     | [job] control thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,492 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,507 | INFO     | [data] control thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,580 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,692 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:50,898 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:51,027 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:51,172 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:51,290 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:51,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:56:18] 2025-11-27 04:55:52,531 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:53,205 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:56:18] 2025-11-27 04:55:58,954 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:56:18] 2025-11-27 04:56:00,120 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139778531936064)>', '<ExcThread(monitor, started 139777722525440)>']
[2025-11-26 23:56:18] 2025-11-27 04:56:05,145 | INFO     | all workflow threads have been joined
[2025-11-26 23:56:18] 2025-11-27 04:56:05,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:56:18] 2025-11-27 04:56:05,145 | INFO     | traces error code: 0
[2025-11-26 23:56:18] 2025-11-27 04:56:05,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:56:18] 2025-11-27 04:56:18,224 | INFO     | PID=516835 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 23:56:18] 2025-11-27 04:56:18,225 | INFO     | .. there are 8 such processes running
[2025-11-26 23:56:18] 2025-11-27 04:56:18,226 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:56:18] 2025-11-27 04:56:18,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:56:18] 2025-11-27 04:56:18,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:56:18] 2025-11-27 04:56:18,227 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:56:18] 2025-11-27 04:56:18,227 | INFO     | [monitor] control thread has ended
[2025-11-26 23:56:18] 2025-11-27 04:56:18,464 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:56:18] 2025-11-27 04:56:18,469 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:56:18] 2025-11-27 04:56:18,473 [wrapper] pilotpid: 516835
[2025-11-26 23:56:18] 2025-11-27 04:56:18,477 [wrapper] Pilot exit status: 0
[2025-11-26 23:56:18] 2025-11-27 04:56:18,519 [wrapper] pandaids: 6895367207 6895367207
[2025-11-26 23:56:18] 2025-11-27 04:56:18,570 [wrapper] cleanup supervisor_pilot 2915373 516836
[2025-11-26 23:56:18] 2025-11-27 04:56:18,574 [wrapper] Test setup, not cleaning
[2025-11-26 23:56:18] 2025-11-27 04:56:18,578 [wrapper] apfmon messages muted
[2025-11-26 23:56:18] 2025-11-27 04:56:18,581 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:56:18] 2025-11-27 04:56:18,585 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:56:18]  *** Error codes and diagnostics ***
[2025-11-26 23:56:18]     "exeErrorCode": 0,
[2025-11-26 23:56:18]     "exeErrorDiag": "",
[2025-11-26 23:56:18]     "pilotErrorCode": 0,
[2025-11-26 23:56:18]     "pilotErrorDiag": "",
[2025-11-26 23:56:18]  *** Listing of results directory ***
[2025-11-26 23:56:18] total 1734064
[2025-11-26 23:56:18] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:07 queuedata.json
[2025-11-26 23:56:18] -rwx------. 1 boincer umatlas     36292 Nov 23 14:07 runpilot2-wrapper.sh
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:56:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-26 23:56:18] -rw-r--r--. 3 boincer umatlas 411048012 Nov 25 00:05 EVNT.47483658._000858.pool.root.1
[2025-11-26 23:56:18] -rw-r--r--. 3 boincer umatlas 411048012 Nov 25 00:05 ATLAS.root_0
[2025-11-26 23:56:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 23:56:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-26 23:56:18] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:05 input.tar.gz
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 20:04 pandaJob.out
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas        57 Nov 25 20:04 setup.sh.local
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas    991877 Nov 25 20:05 agis_schedconf.cvmfs.json
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas       534 Nov 26 23:43 boinc_task_state.xml
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas      6661 Nov 26 23:54 init_data.xml
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas 917831919 Nov 26 23:54 HITS.47556137._008447.pool.root.1
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas      1068 Nov 26 23:55 memory_monitor_summary.json
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas   2786126 Nov 26 23:55 log.47556137._008447.job.log.tgz.1
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas      8635 Nov 26 23:55 heartbeat.json
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:56 boinc_mmap_file
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas        30 Nov 26 23:56 wrapper_checkpoint.txt
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas        97 Nov 26 23:56 pilot_heartbeat.json
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas       821 Nov 26 23:56 pilotlog.txt
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas  13124541 Nov 26 23:56 log.47556137._008447.job.log.1
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas       353 Nov 26 23:56 output.list
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:56 runtime_log
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas  15933440 Nov 26 23:56 result.tar.gz
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas       791 Nov 26 23:56 UmeNDmnbUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQhIKDmfBuIKm.diag
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas      9429 Nov 26 23:56 runtime_log.err
[2025-11-26 23:56:18] -rw-r--r--. 1 boincer umatlas     23938 Nov 26 23:56 stderr.txt
[2025-11-26 23:56:18] HITS file was successfully produced:
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas 917831919 Nov 26 23:54 shared/HITS.pool.root.1
[2025-11-26 23:56:18]  *** Contents of shared directory: ***
[2025-11-26 23:56:18] total 1313904
[2025-11-26 23:56:18] -rw-r--r--. 3 boincer umatlas 411048012 Nov 25 00:05 ATLAS.root_0
[2025-11-26 23:56:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 23:56:18] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:05 input.tar.gz
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas 917831919 Nov 26 23:54 HITS.pool.root.1
[2025-11-26 23:56:18] -rw-------. 1 boincer umatlas  15933440 Nov 26 23:56 result.tar.gz
23:56:40 (512443): run_atlas exited; CPU time 305650.959323
23:56:40 (512443): called boinc_finish(0)

</stderr_txt>
]]>

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