Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:07:46 (203850): wrapper (7.7.26015): starting
00:07:46 (203850): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:07:46] Arguments: --nthreads 9
[2025-11-25 00:07:46] Threads: 9
[2025-11-25 00:07:46] Checking for CVMFS
[2025-11-25 00:07:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:07:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:07:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:07:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:07:48] 2.13.2.0 9514 33847 477372 153270 0 622 38526841 40960000 26640 16776704 0 89237085 99.573 94997261 35930 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:07:48] CVMFS is ok
[2025-11-25 00:07:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:07:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:07:48] Further information can be found at the LHC@home message board.
[2025-11-25 00:07:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:07:48] Checking for apptainer binary...
[2025-11-25 00:07:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:07:48] Running /usr/bin/apptainer --version
[2025-11-25 00:07:48] apptainer version 1.4.4-1.el9
[2025-11-25 00:07:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:07:49] c-211-33-3.aglt2.org
[2025-11-25 00:07:49] apptainer works
[2025-11-25 00:07:49] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:07:49] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:07:49] Starting ATLAS job with PandaID=6895386432
[2025-11-25 00:07:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:39:16]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:39:16] 2025-11-27 01:30:22,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:39:16] 2025-11-27 01:30:22,874 | INFO     | PID=210177 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:39:16] 2025-11-27 01:30:22,875 | INFO     | .. there are 28 such processes running
[2025-11-26 20:39:16] 2025-11-27 01:30:23,875 | INFO     | time since job start (159723s) is within the limit (172800.0s)
[2025-11-26 20:39:16] 2025-11-27 01:30:25,165 | INFO     | monitor loop #8780: job 0:6895386432 is in state 'finished'
[2025-11-26 20:39:16] 2025-11-27 01:30:25,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:39:16] 2025-11-27 01:30:25,882 | INFO     | time since job start (159725s) is within the limit (172800.0s)
[2025-11-26 20:39:16] 2025-11-27 01:30:27,670 | INFO     | monitor loop #8781: job 0:6895386432 is in state 'finished'
[2025-11-26 20:39:16] 2025-11-27 01:30:27,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:39:16] 2025-11-27 01:30:27,889 | INFO     | time since job start (159727s) is within the limit (172800.0s)
[2025-11-26 20:39:16] 2025-11-27 01:30:29,908 | INFO     | time since job start (159729s) is within the limit (172800.0s)
[2025-11-26 20:39:16] 2025-11-27 01:30:30,209 | INFO     | monitor loop #8782: job 0:6895386432 is in state 'finished'
[2025-11-26 20:39:16] 2025-11-27 01:30:30,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:39:16] 2025-11-27 01:30:31,106 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:39:16] 2025-11-27 01:30:31,130 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2663.9761250000006
[2025-11-26 20:39:16] 2025-11-27 01:30:31,251 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895386432/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:39:16] 2025-11-27 01:30:31,252 | INFO     | extracted standard info from prmon json
[2025-11-26 20:39:16] 2025-11-27 01:30:31,253 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:39:16] 2025-11-27 01:30:31,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:39:16] 2025-11-27 01:30:31,496 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:39:16] 2025-11-27 01:30:31,525 | INFO     | sum of square deviations: 5557564504431.082
[2025-11-26 20:39:16] 2025-11-27 01:30:32,154 | INFO     | time since job start (159732s) is within the limit (172800.0s)
[2025-11-26 20:39:16] 2025-11-27 01:30:32,157 | INFO     | sum of deviations: 18299122964195.918
[2025-11-26 20:39:16] 2025-11-27 01:30:32,157 | INFO     | mean x: 1764127163.2002292
[2025-11-26 20:39:16] 2025-11-27 01:30:32,157 | INFO     | mean y: 3057674.8322506687
[2025-11-26 20:39:16] 2025-11-27 01:30:32,157 | INFO     | intersect: -5805598231.570722
[2025-11-26 20:39:16] 2025-11-27 01:30:32,176 | INFO     | chi2: 24.60585453145946
[2025-11-26 20:39:16] 2025-11-27 01:30:32,202 | INFO     | sum of square deviations: 5525772120281.822
[2025-11-26 20:39:16] 2025-11-27 01:30:33,040 | INFO     | monitor loop #8783: job 0:6895386432 is in state 'finished'
[2025-11-26 20:39:16] 2025-11-27 01:30:33,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:39:16] 2025-11-27 01:30:33,416 | INFO     | sum of deviations: 19303374479916.863
[2025-11-26 20:39:16] 2025-11-27 01:30:33,416 | INFO     | mean x: 1764127010.704441
[2025-11-26 20:39:16] 2025-11-27 01:30:33,416 | INFO     | mean y: 3062491.29517611
[2025-11-26 20:39:16] 2025-11-27 01:30:33,416 | INFO     | intersect: -6159624564.28817
[2025-11-26 20:39:16] 2025-11-27 01:30:33,434 | INFO     | chi2: 20.842153591157007
[2025-11-26 20:39:16] 2025-11-27 01:30:33,434 | INFO     | current chi2=20.842153591157007 (change=15.29595704750033 %)
[2025-11-26 20:39:16] 2025-11-27 01:30:33,434 | INFO     | right removable region: 2611
[2025-11-26 20:39:16] 2025-11-27 01:30:33,459 | INFO     | sum of square deviations: 5525768607901.826
[2025-11-26 20:39:16] 2025-11-27 01:30:33,928 | INFO     | sum of deviations: 17238320671565.291
[2025-11-26 20:39:16] 2025-11-27 01:30:33,928 | INFO     | mean x: 1764127315.704441
[2025-11-26 20:39:16] 2025-11-27 01:30:33,928 | INFO     | mean y: 3062762.490045942
[2025-11-26 20:39:16] 2025-11-27 01:30:33,929 | INFO     | intersect: -5500351247.661201
[2025-11-26 20:39:16] 2025-11-27 01:30:33,952 | INFO     | chi2: 20.980020179731298
[2025-11-26 20:39:16] 2025-11-27 01:30:33,952 | INFO     | current chi2=20.980020179731298 (change=14.735657105882686 %)
[2025-11-26 20:39:16] 2025-11-27 01:30:33,952 | INFO     | left removable region: 10
[2025-11-26 20:39:16] 2025-11-27 01:30:33,976 | INFO     | sum of square deviations: 5456250122355.697
[2025-11-26 20:39:16] 2025-11-27 01:30:34,229 | INFO     | time since job start (159734s) is within the limit (172800.0s)
[2025-11-26 20:39:16] 2025-11-27 01:30:34,716 | INFO     | sum of deviations: 17766460632190.637
[2025-11-26 20:39:16] 2025-11-27 01:30:34,736 | INFO     | mean x: 1764127285.211457
[2025-11-26 20:39:16] 2025-11-27 01:30:34,737 | INFO     | mean y: 3071653.6351403305
[2025-11-26 20:39:16] 2025-11-27 01:30:34,737 | INFO     | intersect: -5741221085.890312
[2025-11-26 20:39:16] 2025-11-27 01:30:34,758 | INFO     | chi2: 15.263215590495227
[2025-11-26 20:39:16] 2025-11-27 01:30:34,759 | INFO     | current memory leak: 3.26 B/s (using 2601 data points, chi2=15.26)
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | could have reported an average CPU frequency of 2652 MHz (90 samples)
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | ..............................
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | . Timing measurements:
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | . get job = 0 s
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | . initial setup = 3 s
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | . payload setup = 19 s
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | . stage-in = 0 s
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | . payload execution = 159623 s
[2025-11-26 20:39:16] 2025-11-27 01:30:34,762 | INFO     | . stage-out = 9 s
[2025-11-26 20:39:16] 2025-11-27 01:30:34,763 | INFO     | . log creation = 2 s
[2025-11-26 20:39:16] 2025-11-27 01:30:34,763 | INFO     | ..............................
[2025-11-26 20:39:16] 2025-11-27 01:30:35,485 | INFO     | 
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | job summary report
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | --------------------------------------------------
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | PanDA job id: 6895386432
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | task id: 47556149
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | errors: (none)
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | pilot state: finished 
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | transexitcode: 0
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | exeerrorcode: 0
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | exeerrordiag: 
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | exitcode: 0
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | exitmsg: OK
[2025-11-26 20:39:16] 2025-11-27 01:30:35,486 | INFO     | cpuconsumptiontime: 257992 s
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | nevents: 1000
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | neventsw: 0
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | pid: 219660
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | pgrp: 219660
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | corecount: 9
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | event service: False
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284337, 16: 2284627, 23: 2284655, 159646: 2381483, 159647: 2381610, 159657: 2390665, 159659: 2390721, 159695: 2390967}
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | --------------------------------------------------
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | 
[2025-11-26 20:39:16] 2025-11-27 01:30:35,487 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,621 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:39:16] 2025-11-27 01:30:35,623 | INFO     | job 6895386432 has completed (purged errors)
[2025-11-26 20:39:16] 2025-11-27 01:30:35,623 | INFO     | overall cleanup function is called
[2025-11-26 20:39:16] 2025-11-27 01:30:36,639 | INFO     | --- collectZombieJob: --- 10, [219660]
[2025-11-26 20:39:16] 2025-11-27 01:30:36,640 | INFO     | zombie collector waiting for pid 219660
[2025-11-26 20:39:16] 2025-11-27 01:30:36,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:39:16] 2025-11-27 01:30:36,640 | INFO     | collected zombie processes
[2025-11-26 20:39:16] 2025-11-27 01:30:36,640 | INFO     | will attempt to kill all subprocesses of pid=219660
[2025-11-26 20:39:16] 2025-11-27 01:30:37,483 | INFO     | process IDs to be killed: [219660] (in reverse order)
[2025-11-26 20:39:16] 2025-11-27 01:30:37,733 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:39:16] 2025-11-27 01:30:37,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:39:16] 2025-11-27 01:30:37,776 | INFO     | did not find any defunct processes belonging to 219660
[2025-11-26 20:39:16] 2025-11-27 01:30:37,828 | INFO     | did not find any defunct processes belonging to 219660
[2025-11-26 20:39:16] 2025-11-27 01:30:37,837 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:39:16] 2025-11-27 01:30:37,837 | INFO     | ready for new job
[2025-11-26 20:39:16] 2025-11-27 01:30:37,837 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:39:16] 2025-11-27 01:30:37,870 | INFO     | ***************************************
[2025-11-26 20:39:16] 2025-11-27 01:30:37,870 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:39:16] 2025-11-27 01:30:37,870 | INFO     | ***************************************
[2025-11-26 20:39:16] 2025-11-27 01:30:37,870 | INFO     | 
[2025-11-26 20:39:16] 2025-11-27 01:30:37,883 | INFO     | architecture information:
[2025-11-26 20:39:16] 2025-11-27 01:30:37,892 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:39:16] 2025-11-27 01:30:37,936 | INFO     | cat /etc/os-release:
[2025-11-26 20:39:16] NAME="CentOS Linux"
[2025-11-26 20:39:16] VERSION="7 (Core)"
[2025-11-26 20:39:16] ID="centos"
[2025-11-26 20:39:16] ID_LIKE="rhel fedora"
[2025-11-26 20:39:16] VERSION_ID="7"
[2025-11-26 20:39:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:39:16] ANSI_COLOR="0;31"
[2025-11-26 20:39:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:39:16] HOME_URL="https://www.centos.org/"
[2025-11-26 20:39:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:39:16] 
[2025-11-26 20:39:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:39:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:39:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:39:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:39:16] 
[2025-11-26 20:39:16] 2025-11-27 01:30:37,936 | INFO     | ***************************************
[2025-11-26 20:39:16] 2025-11-27 01:30:38,439 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 20:39:16] 2025-11-27 01:30:38,488 | INFO     | sufficient remaining disk space (112593993728 B)
[2025-11-26 20:39:16] 2025-11-27 01:30:38,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:39:16] 2025-11-27 01:30:38,488 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:39:16] 2025-11-27 01:30:38,488 | INFO     | update_server=False
[2025-11-26 20:39:16] 2025-11-27 01:30:38,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:39:16] 2025-11-27 01:30:38,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:39:16] 2025-11-27 01:30:38,629 | INFO     | all data control threads have been joined
[2025-11-26 20:39:16] 2025-11-27 01:30:39,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:39:16] 2025-11-27 01:30:39,171 | INFO     | aborting loop
[2025-11-26 20:39:16] 2025-11-27 01:30:39,442 | INFO     | all job control threads have been joined
[2025-11-26 20:39:16] 2025-11-27 01:30:39,494 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:39,633 | INFO     | [data] control thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:39,689 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:39,855 | INFO     | all payload control threads have been joined
[2025-11-26 20:39:16] 2025-11-27 01:30:40,003 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,171 | INFO     | [job] validate thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,178 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,233 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,388 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,455 | INFO     | [job] control thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,493 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,495 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:39:16] 2025-11-27 01:30:40,596 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:40,861 | INFO     | [payload] control thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:41,529 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:30:41,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:39:16] 2025-11-27 01:30:45,865 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:39:16] 2025-11-27 01:31:09,842 | INFO     | PID=210177 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:39:16] 2025-11-27 01:31:09,843 | INFO     | .. there are 28 such processes running
[2025-11-26 20:39:16] 2025-11-27 01:31:09,846 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:39:16] 2025-11-27 01:31:09,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:39:16] 2025-11-27 01:31:09,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:39:16] 2025-11-27 01:31:23,605 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:39:16] 2025-11-27 01:31:24,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140532171761472)>', '<ExcThread(monitor, started 140531824830208)>']
[2025-11-26 20:39:16] 2025-11-27 01:31:25,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:39:16] 2025-11-27 01:31:25,013 | INFO     | [monitor] control thread has ended
[2025-11-26 20:39:16] 2025-11-27 01:31:29,637 | INFO     | all workflow threads have been joined
[2025-11-26 20:39:16] 2025-11-27 01:31:29,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:39:16] 2025-11-27 01:31:29,638 | INFO     | traces error code: 0
[2025-11-26 20:39:16] 2025-11-27 01:31:29,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:39:16] 2025-11-27 01:31:30,845 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:39:16] 2025-11-27 01:31:30,861 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:39:16] 2025-11-27 01:31:30,890 [wrapper] pilotpid: 210177
[2025-11-26 20:39:16] 2025-11-27 01:31:30,907 [wrapper] Pilot exit status: 0
[2025-11-26 20:39:16] 2025-11-27 01:31:31,000 [wrapper] pandaids: 6895386432
[2025-11-26 20:39:16] 2025-11-27 01:31:31,549 [wrapper] cleanup supervisor_pilot 3944651 210178
[2025-11-26 20:39:16] 2025-11-27 01:31:31,584 [wrapper] Test setup, not cleaning
[2025-11-26 20:39:16] 2025-11-27 01:31:31,615 [wrapper] apfmon messages muted
[2025-11-26 20:39:16] 2025-11-27 01:31:31,630 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:39:16] 2025-11-27 01:31:31,653 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:39:16]  *** Error codes and diagnostics ***
[2025-11-26 20:39:16]     "exeErrorCode": 0,
[2025-11-26 20:39:16]     "exeErrorDiag": "",
[2025-11-26 20:39:16]     "pilotErrorCode": 0,
[2025-11-26 20:39:16]     "pilotErrorDiag": "",
[2025-11-26 20:39:17]  *** Listing of results directory ***
[2025-11-26 20:39:17] total 1331524
[2025-11-26 20:39:17] -rwx------. 1 boincer umatlas     36292 Nov 24 00:14 runpilot2-wrapper.sh
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:14 queuedata.json
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:39:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:07 run_atlas
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:07 job.xml
[2025-11-26 20:39:17] -rw-r--r--. 2 boincer umatlas 412636832 Nov 25 00:07 EVNT.47483658._001242.pool.root.1
[2025-11-26 20:39:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:07 start_atlas.sh
[2025-11-26 20:39:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:07 shared
[2025-11-26 20:39:17] -rw-r--r--. 2 boincer umatlas    590096 Nov 25 00:07 input.tar.gz
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:07 boinc_lockfile
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:07 pandaJob.out
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas        57 Nov 25 00:07 setup.sh.local
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas    991801 Nov 25 00:08 agis_schedconf.cvmfs.json
[2025-11-26 20:39:17] drwx------. 5 boincer umatlas      4096 Nov 25 00:08 pilot3
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:48 boinc_task_state.xml
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas 901966620 Nov 26 20:27 HITS.47556149._002285.pool.root.1
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas      1074 Nov 26 20:29 memory_monitor_summary.json
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas   3381615 Nov 26 20:29 log.47556149._002285.job.log.tgz.1
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas      8670 Nov 26 20:30 heartbeat.json
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas        95 Nov 26 20:31 pilot_heartbeat.json
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas      4824 Nov 26 20:31 pilotlog.txt
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas  19091756 Nov 26 20:31 log.47556149._002285.job.log.1
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas       353 Nov 26 20:31 output.list
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:31 runtime_log
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas  22497280 Nov 26 20:31 result.tar.gz
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 20:31 runtime_log.err
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas       671 Nov 26 20:31 J6ANDmn5dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHwIKDmkN7Erm.diag
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 20:39 init_data.xml
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:39 boinc_mmap_file
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:39 wrapper_checkpoint.txt
[2025-11-26 20:39:17] -rw-r--r--. 1 boincer umatlas     21885 Nov 26 20:39 stderr.txt
[2025-11-26 20:39:17] HITS file was successfully produced:
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas 901966620 Nov 26 20:27 shared/HITS.pool.root.1
[2025-11-26 20:39:17]  *** Contents of shared directory: ***
[2025-11-26 20:39:17] total 1306372
[2025-11-26 20:39:17] -rw-r--r--. 2 boincer umatlas 412636832 Nov 25 00:07 ATLAS.root_0
[2025-11-26 20:39:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:07 start_atlas.sh
[2025-11-26 20:39:17] -rw-r--r--. 2 boincer umatlas    590096 Nov 25 00:07 input.tar.gz
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas 901966620 Nov 26 20:27 HITS.pool.root.1
[2025-11-26 20:39:17] -rw-------. 1 boincer umatlas  22497280 Nov 26 20:31 result.tar.gz
20:39:38 (203850): run_atlas exited; CPU time 261867.302071
20:39:38 (203850): called boinc_finish(0)

</stderr_txt>
]]>

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