Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:08:53 (4090290): wrapper (7.7.26015): starting
06:08:53 (4090290): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 06:08:53] Arguments: --nthreads 10
[2025-11-26 06:08:53] Threads: 10
[2025-11-26 06:08:53] Checking for CVMFS
[2025-11-26 06:08:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:08:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:08:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:08:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:08:56] 2.13.3.0 11048 29971 388264 153319 0 83 26257760 32935937 25703 16776704 0 82888685 99.427 120961298 37702 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 06:08:56] CVMFS is ok
[2025-11-26 06:08:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:08:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:08:56] Further information can be found at the LHC@home message board.
[2025-11-26 06:08:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:08:56] Checking for apptainer binary...
[2025-11-26 06:08:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:08:56] Running /usr/bin/apptainer --version
[2025-11-26 06:08:56] apptainer version 1.4.4-1.el9
[2025-11-26 06:08:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:08:56] c6-1-24-2.aglt2.org
[2025-11-26 06:08:56] apptainer works
[2025-11-26 06:08:56] Set ATHENA_PROC_NUMBER=10
[2025-11-26 06:08:56] Set ATHENA_CORE_NUMBER=10
[2025-11-26 06:08:57] Starting ATLAS job with PandaID=6895386636
[2025-11-26 06:08:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:47:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:47:41] 2025-11-27 03:46:36,192 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:47:41] 2025-11-27 03:46:36,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:47:41] 2025-11-27 03:46:36,200 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:47:41] 2025-11-27 03:46:36,202 | INFO     | sum of square deviations: 290073698044.92926
[2025-11-26 22:47:41] 2025-11-27 03:46:36,218 | INFO     | sum of deviations: 3252968750773.442
[2025-11-26 22:47:41] 2025-11-27 03:46:36,219 | INFO     | mean x: 1764185327.0460122
[2025-11-26 22:47:41] 2025-11-27 03:46:36,219 | INFO     | mean y: 3256409.7678936603
[2025-11-26 22:47:41] 2025-11-27 03:46:36,219 | INFO     | intersect: -19780818389.61229
[2025-11-26 22:47:41] 2025-11-27 03:46:36,220 | INFO     | chi2: 9.098843600643548
[2025-11-26 22:47:41] 2025-11-27 03:46:36,221 | INFO     | sum of square deviations: 285648020390.41754
[2025-11-26 22:47:41] 2025-11-27 03:46:36,237 | INFO     | sum of deviations: 3589901887095.5137
[2025-11-26 22:47:41] 2025-11-27 03:46:36,237 | INFO     | mean x: 1764185174.5539567
[2025-11-26 22:47:41] 2025-11-27 03:46:36,237 | INFO     | mean y: 3268015.761562179
[2025-11-26 22:47:41] 2025-11-27 03:46:36,237 | INFO     | intersect: -22168255100.908478
[2025-11-26 22:47:41] 2025-11-27 03:46:36,238 | INFO     | chi2: 6.400329884605112
[2025-11-26 22:47:41] 2025-11-27 03:46:36,239 | INFO     | current chi2=6.400329884605112 (change=29.657765695055733 %)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,240 | INFO     | sum of square deviations: 281267303247.87537
[2025-11-26 22:47:41] 2025-11-27 03:46:36,255 | INFO     | sum of deviations: 3691628098264.569
[2025-11-26 22:47:41] 2025-11-27 03:46:36,255 | INFO     | mean x: 1764185022.0568182
[2025-11-26 22:47:41] 2025-11-27 03:46:36,255 | INFO     | mean y: 3271549.262396694
[2025-11-26 22:47:41] 2025-11-27 03:46:36,256 | INFO     | intersect: -23151623892.75391
[2025-11-26 22:47:41] 2025-11-27 03:46:36,257 | INFO     | chi2: 5.877922831251778
[2025-11-26 22:47:41] 2025-11-27 03:46:36,257 | INFO     | current chi2=5.877922831251778 (change=8.162189492918069 %)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,257 | INFO     | right removable region: 967
[2025-11-26 22:47:41] 2025-11-27 03:46:36,258 | INFO     | sum of square deviations: 285647098070.4171
[2025-11-26 22:47:41] 2025-11-27 03:46:36,274 | INFO     | sum of deviations: 2821681388488.051
[2025-11-26 22:47:41] 2025-11-27 03:46:36,274 | INFO     | mean x: 1764185479.5539567
[2025-11-26 22:47:41] 2025-11-27 03:46:36,274 | INFO     | mean y: 3271265.5323741008
[2025-11-26 22:47:41] 2025-11-27 03:46:36,274 | INFO     | intersect: -17423719476.278374
[2025-11-26 22:47:41] 2025-11-27 03:46:36,275 | INFO     | chi2: 5.189738581944324
[2025-11-26 22:47:41] 2025-11-27 03:46:36,276 | INFO     | current chi2=5.189738581944324 (change=42.9626575669763 %)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,277 | INFO     | sum of square deviations: 281265991442.76056
[2025-11-26 22:47:41] 2025-11-27 03:46:36,292 | INFO     | sum of deviations: 2552389403387.399
[2025-11-26 22:47:41] 2025-11-27 03:46:36,292 | INFO     | mean x: 1764185632.0578513
[2025-11-26 22:47:41] 2025-11-27 03:46:36,292 | INFO     | mean y: 3280632.617768595
[2025-11-26 22:47:41] 2025-11-27 03:46:36,292 | INFO     | intersect: -16006080078.839334
[2025-11-26 22:47:41] 2025-11-27 03:46:36,293 | INFO     | chi2: 3.741938260353467
[2025-11-26 22:47:41] 2025-11-27 03:46:36,294 | INFO     | current chi2=3.741938260353467 (change=27.897365131799024 %)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,295 | INFO     | sum of square deviations: 276930205379.66516
[2025-11-26 22:47:41] 2025-11-27 03:46:36,310 | INFO     | sum of deviations: 2442872201080.886
[2025-11-26 22:47:41] 2025-11-27 03:46:36,310 | INFO     | mean x: 1764185784.556594
[2025-11-26 22:47:41] 2025-11-27 03:46:36,310 | INFO     | mean y: 3284484.222222222
[2025-11-26 22:47:41] 2025-11-27 03:46:36,310 | INFO     | intersect: -15559049731.819328
[2025-11-26 22:47:41] 2025-11-27 03:46:36,311 | INFO     | chi2: 3.627827671830356
[2025-11-26 22:47:41] 2025-11-27 03:46:36,311 | INFO     | current chi2=3.627827671830356 (change=3.049504844377947 %)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,311 | INFO     | left removable region: 30
[2025-11-26 22:47:41] 2025-11-27 03:46:36,312 | INFO     | sum of square deviations: 255100928965.5302
[2025-11-26 22:47:41] 2025-11-27 03:46:36,328 | INFO     | sum of deviations: 2620072362184.3247
[2025-11-26 22:47:41] 2025-11-27 03:46:36,328 | INFO     | mean x: 1764185906.5709713
[2025-11-26 22:47:41] 2025-11-27 03:46:36,328 | INFO     | mean y: 3309371.416221985
[2025-11-26 22:47:41] 2025-11-27 03:46:36,328 | INFO     | intersect: -18116164964.90136
[2025-11-26 22:47:41] 2025-11-27 03:46:36,329 | INFO     | chi2: 0.2245033739623128
[2025-11-26 22:47:41] 2025-11-27 03:46:36,329 | INFO     | current memory leak: 10.27 B/s (using 937 data points, chi2=0.22)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,331 | INFO     | could have reported an average CPU frequency of 2994 MHz (36 samples)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,331 | INFO     | ..............................
[2025-11-26 22:47:41] 2025-11-27 03:46:36,331 | INFO     | . Timing measurements:
[2025-11-26 22:47:41] 2025-11-27 03:46:36,331 | INFO     | . get job = 0 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,331 | INFO     | . initial setup = 4 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,331 | INFO     | . payload setup = 42 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,332 | INFO     | . stage-in = 0 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,332 | INFO     | . payload execution = 59680 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,332 | INFO     | . stage-out = 4 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,332 | INFO     | . log creation = 0 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,332 | INFO     | ..............................
[2025-11-26 22:47:41] 2025-11-27 03:46:36,414 | INFO     | 
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | job summary report
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | --------------------------------------------------
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | PanDA job id: 6895386636
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | task id: 47556149
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | errors: (none)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | pilot state: finished 
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | transexitcode: 0
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | exeerrorcode: 0
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | exeerrordiag: 
[2025-11-26 22:47:41] 2025-11-27 03:46:36,416 | INFO     | exitcode: 0
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | exitmsg: OK
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | cpuconsumptiontime: 254124 s
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | nevents: 1000
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | neventsw: 0
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | pid: 4107528
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | pgrp: 4107528
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | corecount: 10
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | event service: False
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | sizes: {0: 2284088, 1: 2284172, 2: 2284371, 3: 2284371, 14: 2284399, 25: 2284427, 29: 2284845, 35: 2284873, 59726: 2337574, 59727: 2337573, 59733: 2346959, 59739: 
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | --------------------------------------------------
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | 
[2025-11-26 22:47:41] 2025-11-27 03:46:36,417 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 22:47:41] 2025-11-27 03:46:36,438 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,438 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,438 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,438 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,439 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,440 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:47:41] 2025-11-27 03:46:36,440 | INFO     | job 6895386636 has completed (purged errors)
[2025-11-26 22:47:41] 2025-11-27 03:46:36,440 | INFO     | overall cleanup function is called
[2025-11-26 22:47:41] 2025-11-27 03:46:37,457 | INFO     | --- collectZombieJob: --- 10, [4107528]
[2025-11-26 22:47:41] 2025-11-27 03:46:37,457 | INFO     | zombie collector waiting for pid 4107528
[2025-11-26 22:47:41] 2025-11-27 03:46:37,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:47:41] 2025-11-27 03:46:37,458 | INFO     | collected zombie processes
[2025-11-26 22:47:41] 2025-11-27 03:46:37,458 | INFO     | will attempt to kill all subprocesses of pid=4107528
[2025-11-26 22:47:41] 2025-11-27 03:46:38,288 | INFO     | process IDs to be killed: [4107528] (in reverse order)
[2025-11-26 22:47:41] 2025-11-27 03:46:38,467 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:47:41] 2025-11-27 03:46:38,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:47:41] 2025-11-27 03:46:38,501 | INFO     | did not find any defunct processes belonging to 4107528
[2025-11-26 22:47:41] 2025-11-27 03:46:38,539 | INFO     | did not find any defunct processes belonging to 4107528
[2025-11-26 22:47:41] 2025-11-27 03:46:38,540 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:47:41] 2025-11-27 03:46:38,541 | INFO     | ready for new job
[2025-11-26 22:47:41] 2025-11-27 03:46:38,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:47:41] 2025-11-27 03:46:38,550 | INFO     | ***************************************
[2025-11-26 22:47:41] 2025-11-27 03:46:38,550 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:47:41] 2025-11-27 03:46:38,550 | INFO     | ***************************************
[2025-11-26 22:47:41] 2025-11-27 03:46:38,550 | INFO     | 
[2025-11-26 22:47:41] 2025-11-27 03:46:38,557 | INFO     | architecture information:
[2025-11-26 22:47:41] 2025-11-27 03:46:38,557 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:47:41] 2025-11-27 03:46:38,598 | INFO     | cat /etc/os-release:
[2025-11-26 22:47:41] NAME="CentOS Linux"
[2025-11-26 22:47:41] VERSION="7 (Core)"
[2025-11-26 22:47:41] ID="centos"
[2025-11-26 22:47:41] ID_LIKE="rhel fedora"
[2025-11-26 22:47:41] VERSION_ID="7"
[2025-11-26 22:47:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:47:41] ANSI_COLOR="0;31"
[2025-11-26 22:47:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:47:41] HOME_URL="https://www.centos.org/"
[2025-11-26 22:47:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:47:41] 
[2025-11-26 22:47:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:47:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:47:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:47:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:47:41] 
[2025-11-26 22:47:41] 2025-11-27 03:46:38,598 | INFO     | ***************************************
[2025-11-26 22:47:41] 2025-11-27 03:46:39,103 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 22:47:41] 2025-11-27 03:46:39,151 | INFO     | sufficient remaining disk space (71075627008 B)
[2025-11-26 22:47:41] 2025-11-27 03:46:39,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:47:41] 2025-11-27 03:46:39,152 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:47:41] 2025-11-27 03:46:39,152 | INFO     | update_server=False
[2025-11-26 22:47:41] 2025-11-27 03:46:39,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:47:41] 2025-11-27 03:46:39,152 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:47:41] 2025-11-27 03:46:39,152 | INFO     | aborting loop
[2025-11-26 22:47:41] 2025-11-27 03:46:39,985 | INFO     | all job control threads have been joined
[2025-11-26 22:47:41] 2025-11-27 03:46:40,065 | INFO     | all data control threads have been joined
[2025-11-26 22:47:41] 2025-11-27 03:46:40,102 | INFO     | all payload control threads have been joined
[2025-11-26 22:47:41] 2025-11-27 03:46:40,147 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:47:41] 2025-11-27 03:46:40,156 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,157 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,265 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:47:41] 2025-11-27 03:46:40,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,410 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,411 | INFO     | [job] validate thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,542 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,708 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,709 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:40,990 | INFO     | [job] control thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:41,059 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:41,072 | INFO     | [data] control thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:41,093 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:41,108 | INFO     | [payload] control thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:41,442 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:47:41] 2025-11-27 03:46:42,153 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:42,447 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:46:44,273 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:47:41] 2025-11-27 03:47:08,537 | INFO     | PID=4095897 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:47:41] 2025-11-27 03:47:08,537 | INFO     | .. there are 44 such processes running
[2025-11-26 22:47:41] 2025-11-27 03:47:08,538 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:47:41] 2025-11-27 03:47:08,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:47:41] 2025-11-27 03:47:08,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:47:41] 2025-11-27 03:47:34,679 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:47:41] 2025-11-27 03:47:35,484 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639567988544)>', '<ExcThread(monitor, started 140639224190720)>']
[2025-11-26 22:47:41] 2025-11-27 03:47:35,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:47:41] 2025-11-27 03:47:35,695 | INFO     | [monitor] control thread has ended
[2025-11-26 22:47:41] 2025-11-27 03:47:40,510 | INFO     | all workflow threads have been joined
[2025-11-26 22:47:41] 2025-11-27 03:47:40,510 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:47:41] 2025-11-27 03:47:40,511 | INFO     | traces error code: 0
[2025-11-26 22:47:41] 2025-11-27 03:47:40,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:47:41] 2025-11-27 03:47:40,871 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:47:41] 2025-11-27 03:47:40,880 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:47:41] 2025-11-27 03:47:40,901 [wrapper] pilotpid: 4095897
[2025-11-26 22:47:41] 2025-11-27 03:47:40,905 [wrapper] Pilot exit status: 0
[2025-11-26 22:47:41] 2025-11-27 03:47:40,918 [wrapper] pandaids: 6895386636
[2025-11-26 22:47:41] 2025-11-27 03:47:41,007 [wrapper] cleanup supervisor_pilot  453487 4095898
[2025-11-26 22:47:41] 2025-11-27 03:47:41,010 [wrapper] Test setup, not cleaning
[2025-11-26 22:47:41] 2025-11-27 03:47:41,016 [wrapper] apfmon messages muted
[2025-11-26 22:47:41] 2025-11-27 03:47:41,019 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:47:41] 2025-11-27 03:47:41,022 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:47:41]  *** Error codes and diagnostics ***
[2025-11-26 22:47:41]     "exeErrorCode": 0,
[2025-11-26 22:47:41]     "exeErrorDiag": "",
[2025-11-26 22:47:41]     "pilotErrorCode": 0,
[2025-11-26 22:47:41]     "pilotErrorDiag": "",
[2025-11-26 22:47:41]  *** Listing of results directory ***
[2025-11-26 22:47:41] total 1327640
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:49 queuedata.json
[2025-11-26 22:47:41] -rwx------. 1 boincer umatlas     36292 Nov 24 00:49 runpilot2-wrapper.sh
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas       100 Nov 26 06:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:47:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 06:08 run_atlas
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas       105 Nov 26 06:08 job.xml
[2025-11-26 22:47:41] -rw-r--r--. 2 boincer umatlas 408072070 Nov 26 06:08 EVNT.47483658._001250.pool.root.1
[2025-11-26 22:47:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 06:08 shared
[2025-11-26 22:47:41] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 06:08 input.tar.gz
[2025-11-26 22:47:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:08 start_atlas.sh
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas         0 Nov 26 06:08 boinc_lockfile
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 06:08 pandaJob.out
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas        57 Nov 26 06:08 setup.sh.local
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas    991827 Nov 26 06:09 agis_schedconf.cvmfs.json
[2025-11-26 22:47:41] drwx------. 5 boincer umatlas      4096 Nov 26 06:09 pilot3
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:36 boinc_task_state.xml
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas 927110571 Nov 26 22:45 HITS.47556149._002367.pool.root.1
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas      6846 Nov 26 22:46 init_data.xml
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas      1064 Nov 26 22:46 memory_monitor_summary.json
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas   2377372 Nov 26 22:46 log.47556149._002367.job.log.tgz.1
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas      8636 Nov 26 22:46 heartbeat.json
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas        95 Nov 26 22:47 pilot_heartbeat.json
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:47 boinc_mmap_file
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:47 wrapper_checkpoint.txt
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas      4824 Nov 26 22:47 pilotlog.txt
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas   7821391 Nov 26 22:47 log.47556149._002367.job.log.1
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas       353 Nov 26 22:47 output.list
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:47 runtime_log
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas  10219520 Nov 26 22:47 result.tar.gz
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas       662 Nov 26 22:47 WkpLDm1ceh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiULKDmjvl8yn.diag
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas      9350 Nov 26 22:47 runtime_log.err
[2025-11-26 22:47:41] -rw-r--r--. 1 boincer umatlas     21178 Nov 26 22:47 stderr.txt
[2025-11-26 22:47:41] HITS file was successfully produced:
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas 927110571 Nov 26 22:45 shared/HITS.pool.root.1
[2025-11-26 22:47:41]  *** Contents of shared directory: ***
[2025-11-26 22:47:41] total 1314476
[2025-11-26 22:47:41] -rw-r--r--. 2 boincer umatlas 408072070 Nov 26 06:08 ATLAS.root_0
[2025-11-26 22:47:41] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 06:08 input.tar.gz
[2025-11-26 22:47:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:08 start_atlas.sh
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas 927110571 Nov 26 22:45 HITS.pool.root.1
[2025-11-26 22:47:41] -rw-------. 1 boincer umatlas  10219520 Nov 26 22:47 result.tar.gz
22:47:42 (4090290): run_atlas exited; CPU time 255207.397534
22:47:42 (4090290): called boinc_finish(0)

</stderr_txt>
]]>

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