Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:32:00 (2060355): wrapper (7.7.26015): starting
07:32:00 (2060355): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 07:32:00] Arguments: --nthreads 8
[2025-11-25 07:32:00] Threads: 8
[2025-11-25 07:32:00] Checking for CVMFS
[2025-11-25 07:32:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:32:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:32:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:32:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:32:03] 2.13.3.0 11541 28612 370296 153281 0 431 19794421 32935937 21655 16776704 0 61604322 99.328 106765856 40080 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 07:32:03] CVMFS is ok
[2025-11-25 07:32:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:32:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:32:03] Further information can be found at the LHC@home message board.
[2025-11-25 07:32:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:32:03] Checking for apptainer binary...
[2025-11-25 07:32:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:32:03] Running /usr/bin/apptainer --version
[2025-11-25 07:32:04] apptainer version 1.4.4-1.el9
[2025-11-25 07:32:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:32:05] c6-1-26-1.aglt2.org
[2025-11-25 07:32:05] apptainer works
[2025-11-25 07:32:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 07:32:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 07:32:05] Starting ATLAS job with PandaID=6895386486
[2025-11-25 07:32:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:23:49]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:23:49] 2025-11-26 13:22:43,908 | INFO     | job 6895386486 has finished - writing final server update
[2025-11-26 08:23:49] 2025-11-26 13:22:43,908 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 08:23:49] 2025-11-26 13:22:43,909 | INFO     | executing command: lscpu
[2025-11-26 08:23:49] 2025-11-26 13:22:43,956 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 08:23:49] 2025-11-26 13:22:44,546 | INFO     | time since job start (89379s) is within the limit (172800.0s)
[2025-11-26 08:23:49] 2025-11-26 13:22:45,334 | INFO     | monitor loop #5772: job 0:6895386486 is in state 'finished'
[2025-11-26 08:23:49] 2025-11-26 13:22:45,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:23:49] 2025-11-26 13:22:46,557 | INFO     | time since job start (89381s) is within the limit (172800.0s)
[2025-11-26 08:23:49] 2025-11-26 13:22:47,838 | INFO     | monitor loop #5773: job 0:6895386486 is in state 'finished'
[2025-11-26 08:23:49] 2025-11-26 13:22:47,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:23:49] 2025-11-26 13:22:48,574 | INFO     | time since job start (89383s) is within the limit (172800.0s)
[2025-11-26 08:23:49] 2025-11-26 13:22:50,345 | INFO     | monitor loop #5774: job 0:6895386486 is in state 'finished'
[2025-11-26 08:23:49] 2025-11-26 13:22:50,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:23:49] 2025-11-26 13:22:50,580 | INFO     | time since job start (89385s) is within the limit (172800.0s)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,438 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:23:49] 2025-11-26 13:22:52,441 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2886.7375357142855
[2025-11-26 08:23:49] 2025-11-26 13:22:52,455 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895386486/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,456 | INFO     | extracted standard info from prmon json
[2025-11-26 08:23:49] 2025-11-26 13:22:52,456 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:23:49] 2025-11-26 13:22:52,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:23:49] 2025-11-26 13:22:52,479 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:23:49] 2025-11-26 13:22:52,481 | INFO     | sum of square deviations: 972895391543.4978
[2025-11-26 08:23:49] 2025-11-26 13:22:52,520 | INFO     | sum of deviations: 5222151813246.518
[2025-11-26 08:23:49] 2025-11-26 13:22:52,520 | INFO     | mean x: 1764118722.4153006
[2025-11-26 08:23:49] 2025-11-26 13:22:52,520 | INFO     | mean y: 2925710.5122950817
[2025-11-26 08:23:49] 2025-11-26 13:22:52,520 | INFO     | intersect: -9466227772.091394
[2025-11-26 08:23:49] 2025-11-26 13:22:52,522 | INFO     | chi2: 16.74214933899361
[2025-11-26 08:23:49] 2025-11-26 13:22:52,524 | INFO     | sum of square deviations: 962961251165.0933
[2025-11-26 08:23:49] 2025-11-26 13:22:52,560 | INFO     | sum of deviations: 5731921970558.433
[2025-11-26 08:23:49] 2025-11-26 13:22:52,560 | INFO     | mean x: 1764118569.9218643
[2025-11-26 08:23:49] 2025-11-26 13:22:52,560 | INFO     | mean y: 2933534.8546949965
[2025-11-26 08:23:49] 2025-11-26 13:22:52,560 | INFO     | intersect: -10497790120.817778
[2025-11-26 08:23:49] 2025-11-26 13:22:52,562 | INFO     | chi2: 13.351984185221035
[2025-11-26 08:23:49] 2025-11-26 13:22:52,562 | INFO     | current chi2=13.351984185221035 (change=20.249282724271538 %)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,562 | INFO     | right removable region: 1458
[2025-11-26 08:23:49] 2025-11-26 13:22:52,564 | INFO     | sum of square deviations: 962959540725.0922
[2025-11-26 08:23:49] 2025-11-26 13:22:52,599 | INFO     | sum of deviations: 4669810918473.192
[2025-11-26 08:23:49] 2025-11-26 13:22:52,600 | INFO     | mean x: 1764118874.9218643
[2025-11-26 08:23:49] 2025-11-26 13:22:52,600 | INFO     | mean y: 2934186.9403701164
[2025-11-26 08:23:49] 2025-11-26 13:22:52,600 | INFO     | intersect: -8552047860.790955
[2025-11-26 08:23:49] 2025-11-26 13:22:52,601 | INFO     | chi2: 13.285917860241508
[2025-11-26 08:23:49] 2025-11-26 13:22:52,601 | INFO     | current chi2=13.285917860241508 (change=20.643893497606683 %)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,602 | INFO     | left removable region: 10
[2025-11-26 08:23:49] 2025-11-26 13:22:52,603 | INFO     | sum of square deviations: 941341267320.1569
[2025-11-26 08:23:49] 2025-11-26 13:22:52,610 | INFO     | time since job start (89387s) is within the limit (172800.0s)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,638 | INFO     | sum of deviations: 4893351272501.652
[2025-11-26 08:23:49] 2025-11-26 13:22:52,639 | INFO     | mean x: 1764118844.436464
[2025-11-26 08:23:49] 2025-11-26 13:22:52,639 | INFO     | mean y: 2949574.142955801
[2025-11-26 08:23:49] 2025-11-26 13:22:52,639 | INFO     | intersect: -9167426241.678318
[2025-11-26 08:23:49] 2025-11-26 13:22:52,641 | INFO     | chi2: 7.752104479780902
[2025-11-26 08:23:49] 2025-11-26 13:22:52,641 | INFO     | current memory leak: 5.20 B/s (using 1448 data points, chi2=7.75)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,642 | INFO     | could have reported an average CPU frequency of 2934 MHz (52 samples)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,642 | INFO     | ..............................
[2025-11-26 08:23:49] 2025-11-26 13:22:52,642 | INFO     | . Timing measurements:
[2025-11-26 08:23:49] 2025-11-26 13:22:52,642 | INFO     | . get job = 0 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,643 | INFO     | . initial setup = 3 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,643 | INFO     | . payload setup = 33 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,643 | INFO     | . stage-in = 0 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,643 | INFO     | . payload execution = 89276 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,643 | INFO     | . stage-out = 4 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,643 | INFO     | . log creation = 0 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,643 | INFO     | ..............................
[2025-11-26 08:23:49] 2025-11-26 13:22:52,744 | INFO     | 
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | job summary report
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | --------------------------------------------------
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | PanDA job id: 6895386486
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | task id: 47556161
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | errors: (none)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | pilot state: finished 
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | transexitcode: 0
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | exeerrorcode: 0
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | exeerrordiag: 
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | exitcode: 0
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | exitmsg: OK
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | cpuconsumptiontime: 244223 s
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | nevents: 1000
[2025-11-26 08:23:49] 2025-11-26 13:22:52,745 | INFO     | neventsw: 0
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | pid: 2081262
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | pgrp: 2081262
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | corecount: 8
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | event service: False
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | sizes: {0: 2284140, 1: 2284339, 12: 2284339, 23: 2284367, 30: 2284657, 34: 2284685, 89311: 2352754, 89312: 2352753, 89317: 2361803, 89320: 2361859, 89329: 2362105}
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | --------------------------------------------------
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | 
[2025-11-26 08:23:49] 2025-11-26 13:22:52,746 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 08:23:49] 2025-11-26 13:22:52,900 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | job 6895386486 has completed (purged errors)
[2025-11-26 08:23:49] 2025-11-26 13:22:52,902 | INFO     | overall cleanup function is called
[2025-11-26 08:23:49] 2025-11-26 13:22:53,918 | INFO     | --- collectZombieJob: --- 10, [2081262]
[2025-11-26 08:23:49] 2025-11-26 13:22:53,919 | INFO     | zombie collector waiting for pid 2081262
[2025-11-26 08:23:49] 2025-11-26 13:22:53,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:23:49] 2025-11-26 13:22:53,919 | INFO     | collected zombie processes
[2025-11-26 08:23:49] 2025-11-26 13:22:53,919 | INFO     | will attempt to kill all subprocesses of pid=2081262
[2025-11-26 08:23:49] 2025-11-26 13:22:54,326 | INFO     | process IDs to be killed: [2081262] (in reverse order)
[2025-11-26 08:23:49] 2025-11-26 13:22:54,465 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:23:49] 2025-11-26 13:22:54,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:23:49] 2025-11-26 13:22:54,481 | INFO     | did not find any defunct processes belonging to 2081262
[2025-11-26 08:23:49] 2025-11-26 13:22:54,504 | INFO     | did not find any defunct processes belonging to 2081262
[2025-11-26 08:23:49] 2025-11-26 13:22:54,506 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:23:49] 2025-11-26 13:22:54,507 | INFO     | ready for new job
[2025-11-26 08:23:49] 2025-11-26 13:22:54,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:23:49] 2025-11-26 13:22:54,514 | INFO     | ***************************************
[2025-11-26 08:23:49] 2025-11-26 13:22:54,515 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:23:49] 2025-11-26 13:22:54,515 | INFO     | ***************************************
[2025-11-26 08:23:49] 2025-11-26 13:22:54,515 | INFO     | 
[2025-11-26 08:23:49] 2025-11-26 13:22:54,518 | INFO     | architecture information:
[2025-11-26 08:23:49] 2025-11-26 13:22:54,519 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:23:49] 2025-11-26 13:22:54,538 | INFO     | cat /etc/os-release:
[2025-11-26 08:23:49] NAME="CentOS Linux"
[2025-11-26 08:23:49] VERSION="7 (Core)"
[2025-11-26 08:23:49] ID="centos"
[2025-11-26 08:23:49] ID_LIKE="rhel fedora"
[2025-11-26 08:23:49] VERSION_ID="7"
[2025-11-26 08:23:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:23:49] ANSI_COLOR="0;31"
[2025-11-26 08:23:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:23:49] HOME_URL="https://www.centos.org/"
[2025-11-26 08:23:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:23:49] 
[2025-11-26 08:23:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:23:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:23:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:23:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:23:49] 
[2025-11-26 08:23:49] 2025-11-26 13:22:54,538 | INFO     | ***************************************
[2025-11-26 08:23:49] 2025-11-26 13:22:55,041 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 08:23:49] 2025-11-26 13:22:55,060 | INFO     | sufficient remaining disk space (70019710976 B)
[2025-11-26 08:23:49] 2025-11-26 13:22:55,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:23:49] 2025-11-26 13:22:55,061 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:23:49] 2025-11-26 13:22:55,061 | INFO     | update_server=False
[2025-11-26 08:23:49] 2025-11-26 13:22:55,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:23:49] 2025-11-26 13:22:55,061 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:23:49] 2025-11-26 13:22:55,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:23:49] 2025-11-26 13:22:55,359 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 08:23:49] 2025-11-26 13:22:55,359 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 08:23:49] 2025-11-26 13:22:55,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:23:49] 2025-11-26 13:22:55,359 | INFO     | will abort loop
[2025-11-26 08:23:49] 2025-11-26 13:22:55,882 | INFO     | all payload control threads have been joined
[2025-11-26 08:23:49] 2025-11-26 13:22:56,075 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:56,084 | INFO     | all data control threads have been joined
[2025-11-26 08:23:49] 2025-11-26 13:22:56,189 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:56,211 | INFO     | [job] validate thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:56,353 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:56,365 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:56,613 | INFO     | all job control threads have been joined
[2025-11-26 08:23:49] 2025-11-26 13:22:56,859 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:56,888 | INFO     | [payload] control thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:56,933 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:57,000 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:57,073 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:57,089 | INFO     | [data] control thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:57,140 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:57,145 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:57,626 | INFO     | [job] control thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:57,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:23:49] 2025-11-26 13:22:58,771 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:22:59,069 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:23:49] 2025-11-26 13:23:26,236 | INFO     | PID=2072441 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:23:49] 2025-11-26 13:23:26,236 | INFO     | .. there are 26 such processes running
[2025-11-26 08:23:49] 2025-11-26 13:23:26,236 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:23:49] 2025-11-26 13:23:26,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:23:49] 2025-11-26 13:23:26,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:23:49] 2025-11-26 13:23:42,676 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:23:49] 2025-11-26 13:23:44,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269952223040)>', '<ExcThread(monitor, started 140269437564672)>']
[2025-11-26 08:23:49] 2025-11-26 13:23:44,344 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:23:49] 2025-11-26 13:23:44,344 | INFO     | [monitor] control thread has ended
[2025-11-26 08:23:49] 2025-11-26 13:23:49,206 | INFO     | all workflow threads have been joined
[2025-11-26 08:23:49] 2025-11-26 13:23:49,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:23:49] 2025-11-26 13:23:49,208 | INFO     | traces error code: 0
[2025-11-26 08:23:49] 2025-11-26 13:23:49,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:23:49] 2025-11-26 13:23:49,399 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:23:49] 2025-11-26 13:23:49,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:23:49] 2025-11-26 13:23:49,405 [wrapper] pilotpid: 2072441
[2025-11-26 08:23:49] 2025-11-26 13:23:49,407 [wrapper] Pilot exit status: 0
[2025-11-26 08:23:49] 2025-11-26 13:23:49,421 [wrapper] pandaids: 6895386486
[2025-11-26 08:23:49] 2025-11-26 13:23:49,503 [wrapper] cleanup supervisor_pilot 3099623 2072443
[2025-11-26 08:23:49] 2025-11-26 13:23:49,506 [wrapper] Test setup, not cleaning
[2025-11-26 08:23:49] 2025-11-26 13:23:49,522 [wrapper] apfmon messages muted
[2025-11-26 08:23:49] 2025-11-26 13:23:49,526 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:23:49] 2025-11-26 13:23:49,529 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:23:49]  *** Error codes and diagnostics ***
[2025-11-26 08:23:49]     "exeErrorCode": 0,
[2025-11-26 08:23:49]     "exeErrorDiag": "",
[2025-11-26 08:23:49]     "pilotErrorCode": 0,
[2025-11-26 08:23:49]     "pilotErrorDiag": "",
[2025-11-26 08:23:49]  *** Listing of results directory ***
[2025-11-26 08:23:49] total 1335744
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 08:23:49] -rwx------. 1 boincer umatlas     36292 Nov 24 00:25 runpilot2-wrapper.sh
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:25 queuedata.json
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas       100 Nov 25 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:23:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 07:31 run_atlas
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas       105 Nov 25 07:31 job.xml
[2025-11-26 08:23:49] -rw-r--r--. 2 boincer umatlas 410978836 Nov 25 07:32 EVNT.47483658._002021.pool.root.1
[2025-11-26 08:23:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 07:32 start_atlas.sh
[2025-11-26 08:23:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 07:32 shared
[2025-11-26 08:23:49] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 07:32 input.tar.gz
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas         0 Nov 25 07:32 boinc_lockfile
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 07:32 pandaJob.out
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas        57 Nov 25 07:32 setup.sh.local
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas    991894 Nov 25 07:33 agis_schedconf.cvmfs.json
[2025-11-26 08:23:49] drwx------. 5 boincer umatlas      4096 Nov 25 07:33 pilot3
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas       533 Nov 26 07:56 boinc_task_state.xml
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 08:21 init_data.xml
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas 924265576 Nov 26 08:21 HITS.47556161._000043.pool.root.1
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas      1058 Nov 26 08:22 memory_monitor_summary.json
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:22 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas   2520565 Nov 26 08:22 log.47556161._000043.job.log.tgz.1
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas        95 Nov 26 08:22 pilot_heartbeat.json
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas      8615 Nov 26 08:22 heartbeat.json
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:23 boinc_mmap_file
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:23 wrapper_checkpoint.txt
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas      5010 Nov 26 08:23 pilotlog.txt
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas  11798538 Nov 26 08:23 log.47556161._000043.job.log.1
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas       353 Nov 26 08:23 output.list
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:23 runtime_log
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas  14336000 Nov 26 08:23 result.tar.gz
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 08:23 runtime_log.err
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas       661 Nov 26 08:23 0YsLDmiFeh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWwIKDmbuwLXo.diag
[2025-11-26 08:23:49] -rw-r--r--. 1 boincer umatlas     21819 Nov 26 08:23 stderr.txt
[2025-11-26 08:23:49] HITS file was successfully produced:
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas 924265576 Nov 26 08:21 shared/HITS.pool.root.1
[2025-11-26 08:23:49]  *** Contents of shared directory: ***
[2025-11-26 08:23:49] total 1318556
[2025-11-26 08:23:49] -rw-r--r--. 2 boincer umatlas 410978836 Nov 25 07:32 ATLAS.root_0
[2025-11-26 08:23:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 07:32 start_atlas.sh
[2025-11-26 08:23:49] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 07:32 input.tar.gz
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas 924265576 Nov 26 08:21 HITS.pool.root.1
[2025-11-26 08:23:49] -rw-------. 1 boincer umatlas  14336000 Nov 26 08:23 result.tar.gz
08:23:51 (2060355): run_atlas exited; CPU time 245999.240110
08:23:51 (2060355): called boinc_finish(0)

</stderr_txt>
]]>

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