Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:14 (1628114): wrapper (7.7.26015): starting
00:05:14 (1628114): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:05:14] Arguments: --nthreads 12
[2025-11-25 00:05:14] Threads: 12
[2025-11-25 00:05:14] Checking for CVMFS
[2025-11-25 00:05:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:16] 2.13.2.0 6699 33954 245292 153270 3 387 22870235 40960001 26251 16776704 0 83915848 99.615 79660020 36651 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:05:16] CVMFS is ok
[2025-11-25 00:05:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:16] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:16] Checking for apptainer binary...
[2025-11-25 00:05:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:16] Running /usr/bin/apptainer --version
[2025-11-25 00:05:16] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:17] c-212-4.aglt2.org
[2025-11-25 00:05:17] apptainer works
[2025-11-25 00:05:17] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:05:17] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:05:17] Starting ATLAS job with PandaID=6895386453
[2025-11-25 00:05:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:49:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:49:11] 2025-11-26 09:47:53,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:49:11] 2025-11-26 09:47:54,467 | INFO     | time since job start (103323s) is within the limit (172800.0s)
[2025-11-26 04:49:11] 2025-11-26 09:47:56,190 | INFO     | monitor loop #6245: job 0:6895386453 is in state 'finished'
[2025-11-26 04:49:11] 2025-11-26 09:47:56,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:49:11] 2025-11-26 09:47:56,474 | INFO     | time since job start (103325s) is within the limit (172800.0s)
[2025-11-26 04:49:11] 2025-11-26 09:47:58,504 | INFO     | time since job start (103327s) is within the limit (172800.0s)
[2025-11-26 04:49:11] 2025-11-26 09:47:58,744 | INFO     | monitor loop #6246: job 0:6895386453 is in state 'finished'
[2025-11-26 04:49:11] 2025-11-26 09:47:58,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:49:11] 2025-11-26 09:48:00,528 | INFO     | time since job start (103329s) is within the limit (172800.0s)
[2025-11-26 04:49:11] 2025-11-26 09:48:01,262 | INFO     | monitor loop #6247: job 0:6895386453 is in state 'finished'
[2025-11-26 04:49:11] 2025-11-26 09:48:01,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:49:11] 2025-11-26 09:48:02,535 | INFO     | time since job start (103331s) is within the limit (172800.0s)
[2025-11-26 04:49:11] 2025-11-26 09:48:03,679 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 04:49:11] 2025-11-26 09:48:03,684 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3257.4792083333327
[2025-11-26 04:49:11] 2025-11-26 09:48:03,709 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895386453/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:49:11] 2025-11-26 09:48:03,710 | INFO     | extracted standard info from prmon json
[2025-11-26 04:49:11] 2025-11-26 09:48:03,710 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:49:11] 2025-11-26 09:48:03,711 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:49:11] 2025-11-26 09:48:03,764 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:49:11] 2025-11-26 09:48:03,770 | INFO     | sum of square deviations: 1502148210185.0017
[2025-11-26 04:49:11] 2025-11-26 09:48:03,778 | INFO     | monitor loop #6248: job 0:6895386453 is in state 'finished'
[2025-11-26 04:49:11] 2025-11-26 09:48:03,778 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:49:11] 2025-11-26 09:48:03,925 | INFO     | sum of deviations: 107688967520151.28
[2025-11-26 04:49:11] 2025-11-26 09:48:03,926 | INFO     | mean x: 1764098801.500591
[2025-11-26 04:49:11] 2025-11-26 09:48:03,952 | INFO     | mean y: 10762182.095153665
[2025-11-26 04:49:11] 2025-11-26 09:48:03,952 | INFO     | intersect: -126457436660.77278
[2025-11-26 04:49:11] 2025-11-26 09:48:03,954 | INFO     | chi2: 197.04007551724308
[2025-11-26 04:49:11] 2025-11-26 09:48:03,955 | INFO     | sum of square deviations: 1488872658774.929
[2025-11-26 04:49:11] 2025-11-26 09:48:04,410 | INFO     | sum of deviations: 110404396229656.98
[2025-11-26 04:49:11] 2025-11-26 09:48:04,411 | INFO     | mean x: 1764098649.0065205
[2025-11-26 04:49:11] 2025-11-26 09:48:04,412 | INFO     | mean y: 10793373.864256077
[2025-11-26 04:49:11] 2025-11-26 09:48:04,412 | INFO     | intersect: -130802439769.50877
[2025-11-26 04:49:11] 2025-11-26 09:48:04,413 | INFO     | chi2: 190.63109401541195
[2025-11-26 04:49:11] 2025-11-26 09:48:04,413 | INFO     | current chi2=190.63109401541195 (change=3.2526284234347456 %)
[2025-11-26 04:49:11] 2025-11-26 09:48:04,414 | INFO     | right removable region: 1686
[2025-11-26 04:49:11] 2025-11-26 09:48:04,539 | INFO     | sum of square deviations: 1488870593924.928
[2025-11-26 04:49:11] 2025-11-26 09:48:04,796 | INFO     | time since job start (103333s) is within the limit (172800.0s)
[2025-11-26 04:49:11] 2025-11-26 09:48:05,525 | INFO     | sum of deviations: 105127386868287.16
[2025-11-26 04:49:11] 2025-11-26 09:48:05,525 | INFO     | mean x: 1764098954.0065205
[2025-11-26 04:49:11] 2025-11-26 09:48:05,529 | INFO     | mean y: 10791601.735625371
[2025-11-26 04:49:11] 2025-11-26 09:48:05,529 | INFO     | intersect: -124550143356.95108
[2025-11-26 04:49:11] 2025-11-26 09:48:05,530 | INFO     | chi2: 192.62081522913968
[2025-11-26 04:49:11] 2025-11-26 09:48:05,530 | INFO     | current chi2=192.62081522913968 (change=2.242823078758245 %)
[2025-11-26 04:49:11] 2025-11-26 09:48:05,530 | INFO     | left removable region: 10
[2025-11-26 04:49:11] 2025-11-26 09:48:05,532 | INFO     | sum of square deviations: 1459939626120.7861
[2025-11-26 04:49:11] 2025-11-26 09:48:05,869 | INFO     | sum of deviations: 106277838047930.78
[2025-11-26 04:49:11] 2025-11-26 09:48:05,870 | INFO     | mean x: 1764098923.5113366
[2025-11-26 04:49:11] 2025-11-26 09:48:05,927 | INFO     | mean y: 10853799.023866348
[2025-11-26 04:49:11] 2025-11-26 09:48:05,927 | INFO     | intersect: -128408579675.51872
[2025-11-26 04:49:11] 2025-11-26 09:48:05,929 | INFO     | chi2: 182.62030439282222
[2025-11-26 04:49:11] 2025-11-26 09:48:05,930 | INFO     | current memory leak: 72.80 B/s (using 1676 data points, chi2=182.62)
[2025-11-26 04:49:11] 2025-11-26 09:48:05,942 | INFO     | could have reported an average CPU frequency of 3106 MHz (60 samples)
[2025-11-26 04:49:11] 2025-11-26 09:48:05,942 | INFO     | ..............................
[2025-11-26 04:49:11] 2025-11-26 09:48:05,943 | INFO     | . Timing measurements:
[2025-11-26 04:49:11] 2025-11-26 09:48:05,951 | INFO     | . get job = 0 s
[2025-11-26 04:49:11] 2025-11-26 09:48:05,951 | INFO     | . initial setup = 3 s
[2025-11-26 04:49:11] 2025-11-26 09:48:05,951 | INFO     | . payload setup = 19 s
[2025-11-26 04:49:11] 2025-11-26 09:48:05,951 | INFO     | . stage-in = 0 s
[2025-11-26 04:49:11] 2025-11-26 09:48:05,951 | INFO     | . payload execution = 103225 s
[2025-11-26 04:49:11] 2025-11-26 09:48:05,952 | INFO     | . stage-out = 25 s
[2025-11-26 04:49:11] 2025-11-26 09:48:05,952 | INFO     | . log creation = 9 s
[2025-11-26 04:49:11] 2025-11-26 09:48:05,952 | INFO     | ..............................
[2025-11-26 04:49:11] 2025-11-26 09:48:06,245 | INFO     | 
[2025-11-26 04:49:11] 2025-11-26 09:48:06,287 | INFO     | job summary report
[2025-11-26 04:49:11] 2025-11-26 09:48:06,287 | INFO     | --------------------------------------------------
[2025-11-26 04:49:11] 2025-11-26 09:48:06,287 | INFO     | PanDA job id: 6895386453
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | task id: 47556149
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | errors: (none)
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | pilot state: finished 
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | transexitcode: 0
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | exeerrorcode: 0
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | exeerrordiag: 
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | exitcode: 0
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | exitmsg: OK
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | cpuconsumptiontime: 212874 s
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | nevents: 1000
[2025-11-26 04:49:11] 2025-11-26 09:48:06,288 | INFO     | neventsw: 0
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | pid: 1649950
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | pgrp: 1649950
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | corecount: 12
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | event service: False
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | sizes: {0: 2284082, 1: 2284166, 2: 2284365, 13: 2284365, 16: 2284683, 23: 2284711, 103248: 2358348, 103274: 2367347, 103277: 2367403, 103298: 2367649}
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | --------------------------------------------------
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | 
[2025-11-26 04:49:11] 2025-11-26 09:48:06,289 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 04:49:11] 2025-11-26 09:48:06,448 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:49:11] 2025-11-26 09:48:06,450 | INFO     | job 6895386453 has completed (purged errors)
[2025-11-26 04:49:11] 2025-11-26 09:48:06,451 | INFO     | overall cleanup function is called
[2025-11-26 04:49:11] 2025-11-26 09:48:07,539 | INFO     | --- collectZombieJob: --- 10, [1649950]
[2025-11-26 04:49:11] 2025-11-26 09:48:07,561 | INFO     | zombie collector waiting for pid 1649950
[2025-11-26 04:49:11] 2025-11-26 09:48:07,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:49:11] 2025-11-26 09:48:07,561 | INFO     | collected zombie processes
[2025-11-26 04:49:11] 2025-11-26 09:48:07,561 | INFO     | will attempt to kill all subprocesses of pid=1649950
[2025-11-26 04:49:11] 2025-11-26 09:48:09,885 | INFO     | process IDs to be killed: [1649950] (in reverse order)
[2025-11-26 04:49:11] 2025-11-26 09:48:10,147 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:49:11] 2025-11-26 09:48:10,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:49:11] 2025-11-26 09:48:10,247 | INFO     | did not find any defunct processes belonging to 1649950
[2025-11-26 04:49:11] 2025-11-26 09:48:10,285 | INFO     | did not find any defunct processes belonging to 1649950
[2025-11-26 04:49:11] 2025-11-26 09:48:10,291 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:49:11] 2025-11-26 09:48:10,291 | INFO     | ready for new job
[2025-11-26 04:49:11] 2025-11-26 09:48:10,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:49:11] 2025-11-26 09:48:10,327 | INFO     | ***************************************
[2025-11-26 04:49:11] 2025-11-26 09:48:10,327 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:49:11] 2025-11-26 09:48:10,327 | INFO     | ***************************************
[2025-11-26 04:49:11] 2025-11-26 09:48:10,327 | INFO     | 
[2025-11-26 04:49:11] 2025-11-26 09:48:10,368 | INFO     | architecture information:
[2025-11-26 04:49:11] 2025-11-26 09:48:10,383 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:49:11] 2025-11-26 09:48:10,496 | INFO     | cat /etc/os-release:
[2025-11-26 04:49:11] NAME="CentOS Linux"
[2025-11-26 04:49:11] VERSION="7 (Core)"
[2025-11-26 04:49:11] ID="centos"
[2025-11-26 04:49:11] ID_LIKE="rhel fedora"
[2025-11-26 04:49:11] VERSION_ID="7"
[2025-11-26 04:49:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:49:11] ANSI_COLOR="0;31"
[2025-11-26 04:49:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:49:11] HOME_URL="https://www.centos.org/"
[2025-11-26 04:49:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:49:11] 
[2025-11-26 04:49:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:49:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:49:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:49:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:49:11] 
[2025-11-26 04:49:11] 2025-11-26 09:48:10,501 | INFO     | ***************************************
[2025-11-26 04:49:11] 2025-11-26 09:48:11,006 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 04:49:11] 2025-11-26 09:48:11,181 | INFO     | sufficient remaining disk space (119999037440 B)
[2025-11-26 04:49:11] 2025-11-26 09:48:11,182 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:49:11] 2025-11-26 09:48:11,182 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:49:11] 2025-11-26 09:48:11,182 | INFO     | update_server=False
[2025-11-26 04:49:11] 2025-11-26 09:48:11,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:49:11] 2025-11-26 09:48:11,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:49:11] 2025-11-26 09:48:11,368 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 04:49:11] 2025-11-26 09:48:11,368 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 04:49:11] 2025-11-26 09:48:11,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:49:11] 2025-11-26 09:48:11,368 | INFO     | will abort loop
[2025-11-26 04:49:11] 2025-11-26 09:48:11,935 | INFO     | all job control threads have been joined
[2025-11-26 04:49:11] 2025-11-26 09:48:12,188 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:12,278 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:12,291 | INFO     | all payload control threads have been joined
[2025-11-26 04:49:11] 2025-11-26 09:48:12,304 | INFO     | all data control threads have been joined
[2025-11-26 04:49:11] 2025-11-26 09:48:12,374 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:12,453 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:12,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:49:11] 2025-11-26 09:48:12,941 | INFO     | [job] control thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,189 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,298 | INFO     | [payload] control thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,341 | INFO     | [data] control thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,440 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,440 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,445 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,449 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,536 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:13,598 | INFO     | [job] validate thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:14,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:49:11] 2025-11-26 09:48:14,609 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:18,105 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:49:11] 2025-11-26 09:48:44,121 | INFO     | PID=1634978 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:49:11] 2025-11-26 09:48:44,122 | INFO     | .. there are 28 such processes running
[2025-11-26 04:49:11] 2025-11-26 09:48:44,122 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:49:11] 2025-11-26 09:48:44,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:49:11] 2025-11-26 09:48:44,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:49:11] 2025-11-26 09:48:55,464 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:49:11] 2025-11-26 09:48:57,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140177200641856)>', '<ExcThread(monitor, started 140176693114624)>']
[2025-11-26 04:49:11] 2025-11-26 09:48:58,212 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:49:11] 2025-11-26 09:48:58,212 | INFO     | [monitor] control thread has ended
[2025-11-26 04:49:11] 2025-11-26 09:49:02,418 | INFO     | all workflow threads have been joined
[2025-11-26 04:49:11] 2025-11-26 09:49:02,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:49:11] 2025-11-26 09:49:02,418 | INFO     | traces error code: 0
[2025-11-26 04:49:11] 2025-11-26 09:49:02,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:49:11] 2025-11-26 09:49:09,827 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:49:11] 2025-11-26 09:49:09,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:49:11] 2025-11-26 09:49:09,904 [wrapper] pilotpid: 1634978
[2025-11-26 04:49:11] 2025-11-26 09:49:09,937 [wrapper] Pilot exit status: 0
[2025-11-26 04:49:11] 2025-11-26 09:49:10,064 [wrapper] pandaids: 6895386453
[2025-11-26 04:49:11] 2025-11-26 09:49:10,412 [wrapper] cleanup supervisor_pilot 3355654 1634979
[2025-11-26 04:49:11] 2025-11-26 09:49:10,431 [wrapper] Test setup, not cleaning
[2025-11-26 04:49:11] 2025-11-26 09:49:10,489 [wrapper] apfmon messages muted
[2025-11-26 04:49:11] 2025-11-26 09:49:10,555 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:49:11] 2025-11-26 09:49:10,602 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:49:11]  *** Error codes and diagnostics ***
[2025-11-26 04:49:11]     "exeErrorCode": 0,
[2025-11-26 04:49:11]     "exeErrorDiag": "",
[2025-11-26 04:49:11]     "pilotErrorCode": 0,
[2025-11-26 04:49:11]     "pilotErrorDiag": "",
[2025-11-26 04:49:11]  *** Listing of results directory ***
[2025-11-26 04:49:11] total 1325972
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 04:49:11] -rwx------. 1 boincer umatlas     36292 Nov 24 00:25 runpilot2-wrapper.sh
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:25 queuedata.json
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:49:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-26 04:49:11] -rw-r--r--. 2 boincer umatlas 408258873 Nov 25 00:05 EVNT.47483658._001244.pool.root.1
[2025-11-26 04:49:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 04:49:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-26 04:49:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:05 input.tar.gz
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:05 pandaJob.out
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas        57 Nov 25 00:05 setup.sh.local
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-26 04:49:11] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas       533 Nov 26 03:37 boinc_task_state.xml
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas 913298182 Nov 26 04:39 HITS.47556149._002306.pool.root.1
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas      1080 Nov 26 04:47 memory_monitor_summary.json
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas   1516240 Nov 26 04:47 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas   3114918 Nov 26 04:47 log.47556149._002306.job.log.tgz.1
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 04:47 init_data.xml
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas      8665 Nov 26 04:48 heartbeat.json
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas        95 Nov 26 04:48 pilot_heartbeat.json
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas      5011 Nov 26 04:49 pilotlog.txt
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas  13044026 Nov 26 04:49 log.47556149._002306.job.log.1
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 04:49 boinc_mmap_file
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas       353 Nov 26 04:49 output.list
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas       620 Nov 26 04:49 runtime_log
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas  16179200 Nov 26 04:49 result.tar.gz
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas       669 Nov 26 04:49 ZDeLDmiFeh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQwIKDmRSG3To.diag
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas      9341 Nov 26 04:49 runtime_log.err
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas        29 Nov 26 04:49 wrapper_checkpoint.txt
[2025-11-26 04:49:11] -rw-r--r--. 1 boincer umatlas     21820 Nov 26 04:49 stderr.txt
[2025-11-26 04:49:11] HITS file was successfully produced:
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas 913298182 Nov 26 04:39 shared/HITS.pool.root.1
[2025-11-26 04:49:11]  *** Contents of shared directory: ***
[2025-11-26 04:49:11] total 1306988
[2025-11-26 04:49:11] -rw-r--r--. 2 boincer umatlas 408258873 Nov 25 00:05 ATLAS.root_0
[2025-11-26 04:49:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 04:49:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:05 input.tar.gz
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas 913298182 Nov 26 04:39 HITS.pool.root.1
[2025-11-26 04:49:11] -rw-------. 1 boincer umatlas  16179200 Nov 26 04:49 result.tar.gz
04:49:14 (1628114): run_atlas exited; CPU time 214491.244277
04:49:14 (1628114): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN