Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:31 (2772948): wrapper (7.7.26015): starting
00:03:31 (2772948): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:03:31] Arguments: --nthreads 12
[2025-11-25 00:03:31] Threads: 12
[2025-11-25 00:03:31] Checking for CVMFS
[2025-11-25 00:03:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:03:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:03:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:03:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:03:32] 2.13.2.0 8544 32493 184532 153270 2 843 30356859 40960000 22138 16776704 0 67372928 99.789 35865930 38468 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:03:32] CVMFS is ok
[2025-11-25 00:03:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:03:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:03:32] Further information can be found at the LHC@home message board.
[2025-11-25 00:03:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:03:32] Checking for apptainer binary...
[2025-11-25 00:03:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:03:32] Running /usr/bin/apptainer --version
[2025-11-25 00:03:32] apptainer version 1.4.4-1.el9
[2025-11-25 00:03:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:03:32] c-212-10.aglt2.org
[2025-11-25 00:03:32] apptainer works
[2025-11-25 00:03:32] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:03:32] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:03:32] Starting ATLAS job with PandaID=6895385426
[2025-11-25 00:03:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:18:57]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:18:58] 2025-11-26 19:17:50,762 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 14:18:58] 2025-11-26 19:17:50,762 | INFO     | log transfer has been attempted: DONE
[2025-11-26 14:18:58] 2025-11-26 19:17:50,762 | INFO     | job 6895385426 has finished - writing final server update
[2025-11-26 14:18:58] 2025-11-26 19:17:50,763 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 14:18:58] 2025-11-26 19:17:50,773 | INFO     | executing command: lscpu
[2025-11-26 14:18:58] 2025-11-26 19:17:51,012 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 14:18:58] 2025-11-26 19:17:51,066 | INFO     | monitor loop #8958: job 0:6895385426 is in state 'finished'
[2025-11-26 14:18:58] 2025-11-26 19:17:51,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:18:58] 2025-11-26 19:17:52,552 | INFO     | time since job start (137641s) is within the limit (172800.0s)
[2025-11-26 14:18:58] 2025-11-26 19:17:53,571 | INFO     | monitor loop #8959: job 0:6895385426 is in state 'finished'
[2025-11-26 14:18:58] 2025-11-26 19:17:53,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:18:58] 2025-11-26 19:17:54,560 | INFO     | time since job start (137643s) is within the limit (172800.0s)
[2025-11-26 14:18:58] 2025-11-26 19:17:56,076 | INFO     | monitor loop #8960: job 0:6895385426 is in state 'finished'
[2025-11-26 14:18:58] 2025-11-26 19:17:56,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:18:58] 2025-11-26 19:17:56,567 | INFO     | time since job start (137645s) is within the limit (172800.0s)
[2025-11-26 14:18:58] 2025-11-26 19:17:57,290 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:18:58] 2025-11-26 19:17:57,296 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3024.789593750001
[2025-11-26 14:18:58] 2025-11-26 19:17:57,329 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895385426/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:18:58] 2025-11-26 19:17:57,330 | INFO     | extracted standard info from prmon json
[2025-11-26 14:18:58] 2025-11-26 19:17:57,330 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:18:58] 2025-11-26 19:17:57,330 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:18:58] 2025-11-26 19:17:57,377 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:18:58] 2025-11-26 19:17:57,380 | INFO     | sum of square deviations: 3560536804299.3647
[2025-11-26 14:18:58] 2025-11-26 19:17:57,506 | INFO     | sum of deviations: 114298480782967.88
[2025-11-26 14:18:58] 2025-11-26 19:17:57,507 | INFO     | mean x: 1764115864.1498227
[2025-11-26 14:18:58] 2025-11-26 19:17:57,507 | INFO     | mean y: 6873785.624113475
[2025-11-26 14:18:58] 2025-11-26 19:17:57,507 | INFO     | intersect: -56623846322.08019
[2025-11-26 14:18:58] 2025-11-26 19:17:57,509 | INFO     | chi2: 77.19561240912437
[2025-11-26 14:18:58] 2025-11-26 19:17:57,511 | INFO     | sum of square deviations: 3536918352124.1753
[2025-11-26 14:18:58] 2025-11-26 19:17:57,624 | INFO     | sum of deviations: 116487762474671.36
[2025-11-26 14:18:58] 2025-11-26 19:17:57,625 | INFO     | mean x: 1764115711.6557086
[2025-11-26 14:18:58] 2025-11-26 19:17:57,625 | INFO     | mean y: 6887921.068858285
[2025-11-26 14:18:58] 2025-11-26 19:17:57,625 | INFO     | intersect: -58093942106.22585
[2025-11-26 14:18:58] 2025-11-26 19:17:57,627 | INFO     | chi2: 72.58475705555742
[2025-11-26 14:18:58] 2025-11-26 19:17:57,627 | INFO     | current chi2=72.58475705555742 (change=5.97295002872722 %)
[2025-11-26 14:18:58] 2025-11-26 19:17:57,627 | INFO     | right removable region: 2250
[2025-11-26 14:18:58] 2025-11-26 19:17:57,629 | INFO     | sum of square deviations: 3536914980294.791
[2025-11-26 14:18:58] 2025-11-26 19:17:57,868 | INFO     | sum of deviations: 112311696443427.56
[2025-11-26 14:18:58] 2025-11-26 19:17:57,869 | INFO     | mean x: 1764116016.65482
[2025-11-26 14:18:58] 2025-11-26 19:17:57,869 | INFO     | mean y: 6886610.315859618
[2025-11-26 14:18:58] 2025-11-26 19:17:57,869 | INFO     | intersect: -56011101850.636955
[2025-11-26 14:18:58] 2025-11-26 19:17:57,871 | INFO     | chi2: 73.84342072469991
[2025-11-26 14:18:58] 2025-11-26 19:17:57,871 | INFO     | current chi2=73.84342072469991 (change=4.342464007744865 %)
[2025-11-26 14:18:58] 2025-11-26 19:17:57,871 | INFO     | left removable region: 10
[2025-11-26 14:18:58] 2025-11-26 19:17:57,873 | INFO     | sum of square deviations: 3485321009008.8145
[2025-11-26 14:18:58] 2025-11-26 19:17:57,971 | INFO     | sum of deviations: 113387748955119.27
[2025-11-26 14:18:58] 2025-11-26 19:17:57,971 | INFO     | mean x: 1764115986.1611607
[2025-11-26 14:18:58] 2025-11-26 19:17:57,971 | INFO     | mean y: 6912788.254017857
[2025-11-26 14:18:58] 2025-11-26 19:17:57,972 | INFO     | intersect: -57384971646.35659
[2025-11-26 14:18:58] 2025-11-26 19:17:57,973 | INFO     | chi2: 67.36940511845916
[2025-11-26 14:18:58] 2025-11-26 19:17:57,974 | INFO     | current memory leak: 32.53 B/s (using 2240 data points, chi2=67.37)
[2025-11-26 14:18:58] 2025-11-26 19:17:57,976 | INFO     | could have reported an average CPU frequency of 3051 MHz (79 samples)
[2025-11-26 14:18:58] 2025-11-26 19:17:57,977 | INFO     | ..............................
[2025-11-26 14:18:58] 2025-11-26 19:17:57,977 | INFO     | . Timing measurements:
[2025-11-26 14:18:58] 2025-11-26 19:17:57,977 | INFO     | . get job = 0 s
[2025-11-26 14:18:58] 2025-11-26 19:17:57,978 | INFO     | . initial setup = 2 s
[2025-11-26 14:18:58] 2025-11-26 19:17:57,978 | INFO     | . payload setup = 12 s
[2025-11-26 14:18:58] 2025-11-26 19:17:57,978 | INFO     | . stage-in = 0 s
[2025-11-26 14:18:58] 2025-11-26 19:17:57,978 | INFO     | . payload execution = 137583 s
[2025-11-26 14:18:58] 2025-11-26 19:17:57,978 | INFO     | . stage-out = 4 s
[2025-11-26 14:18:58] 2025-11-26 19:17:57,978 | INFO     | . log creation = 1 s
[2025-11-26 14:18:58] 2025-11-26 19:17:57,978 | INFO     | ..............................
[2025-11-26 14:18:58] 2025-11-26 19:17:58,074 | INFO     | 
[2025-11-26 14:18:58] 2025-11-26 19:17:58,075 | INFO     | job summary report
[2025-11-26 14:18:58] 2025-11-26 19:17:58,075 | INFO     | --------------------------------------------------
[2025-11-26 14:18:58] 2025-11-26 19:17:58,075 | INFO     | PanDA job id: 6895385426
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | task id: 47556149
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | errors: (none)
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | pilot state: finished 
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | transexitcode: 0
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | exeerrorcode: 0
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | exeerrordiag: 
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | exitcode: 0
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | exitmsg: OK
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | cpuconsumptiontime: 220749 s
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | nevents: 1000
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | neventsw: 0
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | pid: 2801527
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | pgrp: 2801527
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | corecount: 12
[2025-11-26 14:18:58] 2025-11-26 19:17:58,076 | INFO     | event service: False
[2025-11-26 14:18:58] 2025-11-26 19:17:58,077 | INFO     | sizes: {0: 2284310, 11: 2284310, 12: 2284600, 22: 2284628, 137597: 2374711, 137598: 2374710, 137604: 2383893, 137605: 2383949, 137615: 2384195}
[2025-11-26 14:18:58] 2025-11-26 19:17:58,077 | INFO     | --------------------------------------------------
[2025-11-26 14:18:58] 2025-11-26 19:17:58,077 | INFO     | 
[2025-11-26 14:18:58] 2025-11-26 19:17:58,077 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 14:18:58] 2025-11-26 19:17:58,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,161 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,161 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,161 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,162 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:18:58] 2025-11-26 19:17:58,163 | INFO     | job 6895385426 has completed (purged errors)
[2025-11-26 14:18:58] 2025-11-26 19:17:58,163 | INFO     | overall cleanup function is called
[2025-11-26 14:18:58] 2025-11-26 19:17:59,184 | INFO     | --- collectZombieJob: --- 10, [2801527]
[2025-11-26 14:18:58] 2025-11-26 19:17:59,184 | INFO     | zombie collector waiting for pid 2801527
[2025-11-26 14:18:58] 2025-11-26 19:17:59,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:18:58] 2025-11-26 19:17:59,184 | INFO     | collected zombie processes
[2025-11-26 14:18:58] 2025-11-26 19:17:59,184 | INFO     | will attempt to kill all subprocesses of pid=2801527
[2025-11-26 14:18:58] 2025-11-26 19:17:59,874 | INFO     | process IDs to be killed: [2801527] (in reverse order)
[2025-11-26 14:18:58] 2025-11-26 19:18:00,007 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:18:58] 2025-11-26 19:18:00,007 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:18:58] 2025-11-26 19:18:00,024 | INFO     | did not find any defunct processes belonging to 2801527
[2025-11-26 14:18:58] 2025-11-26 19:18:00,041 | INFO     | did not find any defunct processes belonging to 2801527
[2025-11-26 14:18:58] 2025-11-26 19:18:00,043 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:18:58] 2025-11-26 19:18:00,043 | INFO     | ready for new job
[2025-11-26 14:18:58] 2025-11-26 19:18:00,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:18:58] 2025-11-26 19:18:00,051 | INFO     | ***************************************
[2025-11-26 14:18:58] 2025-11-26 19:18:00,052 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:18:58] 2025-11-26 19:18:00,052 | INFO     | ***************************************
[2025-11-26 14:18:58] 2025-11-26 19:18:00,052 | INFO     | 
[2025-11-26 14:18:58] 2025-11-26 19:18:00,061 | INFO     | architecture information:
[2025-11-26 14:18:58] 2025-11-26 19:18:00,070 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:18:58] 2025-11-26 19:18:00,159 | INFO     | cat /etc/os-release:
[2025-11-26 14:18:58] NAME="CentOS Linux"
[2025-11-26 14:18:58] VERSION="7 (Core)"
[2025-11-26 14:18:58] ID="centos"
[2025-11-26 14:18:58] ID_LIKE="rhel fedora"
[2025-11-26 14:18:58] VERSION_ID="7"
[2025-11-26 14:18:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:18:58] ANSI_COLOR="0;31"
[2025-11-26 14:18:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:18:58] HOME_URL="https://www.centos.org/"
[2025-11-26 14:18:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:18:58] 
[2025-11-26 14:18:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:18:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:18:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:18:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:18:58] 
[2025-11-26 14:18:58] 2025-11-26 19:18:00,160 | INFO     | ***************************************
[2025-11-26 14:18:58] 2025-11-26 19:18:00,663 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 14:18:58] 2025-11-26 19:18:00,716 | INFO     | sufficient remaining disk space (123861991424 B)
[2025-11-26 14:18:58] 2025-11-26 19:18:00,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:18:58] 2025-11-26 19:18:00,716 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:18:58] 2025-11-26 19:18:00,716 | INFO     | update_server=False
[2025-11-26 14:18:58] 2025-11-26 19:18:00,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:18:58] 2025-11-26 19:18:00,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:18:58] 2025-11-26 19:18:00,929 | INFO     | all data control threads have been joined
[2025-11-26 14:18:58] 2025-11-26 19:18:01,114 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 14:18:58] 2025-11-26 19:18:01,114 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 14:18:58] 2025-11-26 19:18:01,114 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:18:58] 2025-11-26 19:18:01,115 | INFO     | will abort loop
[2025-11-26 14:18:58] 2025-11-26 19:18:01,338 | INFO     | all job control threads have been joined
[2025-11-26 14:18:58] 2025-11-26 19:18:01,508 | INFO     | all payload control threads have been joined
[2025-11-26 14:18:58] 2025-11-26 19:18:01,722 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:01,865 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:01,902 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:01,935 | INFO     | [data] control thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,136 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,343 | INFO     | [job] control thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,514 | INFO     | [payload] control thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,615 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,623 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,625 | INFO     | [job] validate thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,656 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,723 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:02,816 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:18:58] 2025-11-26 19:18:03,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:18:58] 2025-11-26 19:18:03,225 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:03,234 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:04,117 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:06,824 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:18:58] 2025-11-26 19:18:30,152 | INFO     | PID=2780143 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:18:58] 2025-11-26 19:18:30,152 | INFO     | .. there are 16 such processes running
[2025-11-26 14:18:58] 2025-11-26 19:18:30,152 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:18:58] 2025-11-26 19:18:30,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:18:58] 2025-11-26 19:18:30,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:18:58] 2025-11-26 19:18:50,288 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:18:58] 2025-11-26 19:18:50,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517690451776)>', '<ExcThread(monitor, started 140516876338944)>']
[2025-11-26 14:18:58] 2025-11-26 19:18:51,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:18:58] 2025-11-26 19:18:51,275 | INFO     | [monitor] control thread has ended
[2025-11-26 14:18:58] 2025-11-26 19:18:55,662 | INFO     | all workflow threads have been joined
[2025-11-26 14:18:58] 2025-11-26 19:18:55,662 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:18:58] 2025-11-26 19:18:55,674 | INFO     | traces error code: 0
[2025-11-26 14:18:58] 2025-11-26 19:18:55,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:18:58] 2025-11-26 19:18:57,269 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:18:58] 2025-11-26 19:18:57,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:18:58] 2025-11-26 19:18:57,282 [wrapper] pilotpid: 2780143
[2025-11-26 14:18:58] 2025-11-26 19:18:57,307 [wrapper] Pilot exit status: 0
[2025-11-26 14:18:58] 2025-11-26 19:18:57,336 [wrapper] pandaids: 6895385426
[2025-11-26 14:18:58] 2025-11-26 19:18:57,438 [wrapper] cleanup supervisor_pilot 3498007 2780144
[2025-11-26 14:18:58] 2025-11-26 19:18:57,442 [wrapper] Test setup, not cleaning
[2025-11-26 14:18:58] 2025-11-26 19:18:57,445 [wrapper] apfmon messages muted
[2025-11-26 14:18:58] 2025-11-26 19:18:57,447 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:18:58] 2025-11-26 19:18:57,450 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:18:58]  *** Error codes and diagnostics ***
[2025-11-26 14:18:58]     "exeErrorCode": 0,
[2025-11-26 14:18:58]     "exeErrorDiag": "",
[2025-11-26 14:18:58]     "pilotErrorCode": 0,
[2025-11-26 14:18:58]     "pilotErrorDiag": "",
[2025-11-26 14:18:58]  *** Listing of results directory ***
[2025-11-26 14:18:58] total 1341460
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 14:18:58] -rwx------. 1 boincer umatlas     36292 Nov 24 00:10 runpilot2-wrapper.sh
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:10 queuedata.json
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:18:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:03 run_atlas
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:03 job.xml
[2025-11-26 14:18:58] -rw-r--r--. 2 boincer umatlas 410535916 Nov 25 00:03 EVNT.47483658._001235.pool.root.1
[2025-11-26 14:18:58] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 00:03 input.tar.gz
[2025-11-26 14:18:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 14:18:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:03 shared
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:03 boinc_lockfile
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:03 pandaJob.out
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas        57 Nov 25 00:03 setup.sh.local
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas    991801 Nov 25 00:03 agis_schedconf.cvmfs.json
[2025-11-26 14:18:58] drwx------. 5 boincer umatlas      4096 Nov 25 00:03 pilot3
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas       534 Nov 26 14:08 boinc_task_state.xml
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas      6950 Nov 26 14:11 init_data.xml
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas 915775269 Nov 26 14:17 HITS.47556149._002219.pool.root.1
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas      1080 Nov 26 14:17 memory_monitor_summary.json
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas   3578371 Nov 26 14:17 log.47556149._002219.job.log.tgz.1
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas        95 Nov 26 14:17 pilot_heartbeat.json
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas      8646 Nov 26 14:17 heartbeat.json
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas      5011 Nov 26 14:18 pilotlog.txt
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:18 boinc_mmap_file
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas        30 Nov 26 14:18 wrapper_checkpoint.txt
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas  18134183 Nov 26 14:18 log.47556149._002219.job.log.1
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas       353 Nov 26 14:18 output.list
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:18 runtime_log
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas  21729280 Nov 26 14:18 result.tar.gz
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas       671 Nov 26 14:18 TgnKDmC1dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdvIKDm1Zm7Mo.diag
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas      9346 Nov 26 14:18 runtime_log.err
[2025-11-26 14:18:58] -rw-r--r--. 1 boincer umatlas     21795 Nov 26 14:18 stderr.txt
[2025-11-26 14:18:58] HITS file was successfully produced:
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas 915775269 Nov 26 14:17 shared/HITS.pool.root.1
[2025-11-26 14:18:58]  *** Contents of shared directory: ***
[2025-11-26 14:18:58] total 1317052
[2025-11-26 14:18:58] -rw-r--r--. 2 boincer umatlas 410535916 Nov 25 00:03 ATLAS.root_0
[2025-11-26 14:18:58] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 00:03 input.tar.gz
[2025-11-26 14:18:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas 915775269 Nov 26 14:17 HITS.pool.root.1
[2025-11-26 14:18:58] -rw-------. 1 boincer umatlas  21729280 Nov 26 14:18 result.tar.gz
14:18:59 (2772948): run_atlas exited; CPU time 221204.067615
14:18:59 (2772948): called boinc_finish(0)

</stderr_txt>
]]>

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