Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:14 (3216500): wrapper (7.7.26015): starting
00:04:14 (3216500): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:04:14] Arguments: --nthreads 8
[2025-11-25 00:04:14] Threads: 8
[2025-11-25 00:04:14] Checking for CVMFS
[2025-11-25 00:04:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:04:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:04:17] 2.13.2.0 6465 31955 417532 153270 1 387 22283524 40960000 16972 16776704 0 98089635 99.580 100644058 38728 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:04:17] CVMFS is ok
[2025-11-25 00:04:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:04:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:04:17] Further information can be found at the LHC@home message board.
[2025-11-25 00:04:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:04:17] Checking for apptainer binary...
[2025-11-25 00:04:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:04:17] Running /usr/bin/apptainer --version
[2025-11-25 00:04:17] apptainer version 1.4.4-1.el9
[2025-11-25 00:04:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:04:17] c-206-40.aglt2.org
[2025-11-25 00:04:17] apptainer works
[2025-11-25 00:04:17] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:04:17] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:04:17] Starting ATLAS job with PandaID=6895386556
[2025-11-25 00:04:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:01:08]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:01:08] 2025-11-25 21:15:05,256 | INFO     | log transfer has been attempted: DONE
[2025-11-26 00:01:08] 2025-11-25 21:15:05,257 | INFO     | job 6895386556 has finished - writing final server update
[2025-11-26 00:01:08] 2025-11-25 21:15:05,257 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 00:01:08] 2025-11-25 21:15:05,263 | INFO     | executing command: lscpu
[2025-11-26 00:01:08] 2025-11-25 21:15:05,352 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 00:01:08] 2025-11-25 21:15:05,512 | INFO     | monitor loop #3258: job 0:6895386556 is in state 'finished'
[2025-11-26 00:01:08] 2025-11-25 21:15:05,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:01:08] 2025-11-25 21:15:05,613 | INFO     | time since job start (58219s) is within the limit (172800.0s)
[2025-11-26 00:01:08] 2025-11-25 21:15:07,634 | INFO     | time since job start (58221s) is within the limit (172800.0s)
[2025-11-26 00:01:08] 2025-11-25 21:15:08,016 | INFO     | monitor loop #3259: job 0:6895386556 is in state 'finished'
[2025-11-26 00:01:08] 2025-11-25 21:15:08,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:01:08] 2025-11-25 21:15:09,640 | INFO     | time since job start (58223s) is within the limit (172800.0s)
[2025-11-26 00:01:08] 2025-11-25 21:15:10,522 | INFO     | monitor loop #3260: job 0:6895386556 is in state 'finished'
[2025-11-26 00:01:08] 2025-11-25 21:15:10,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:01:08] 2025-11-25 21:15:11,652 | INFO     | time since job start (58225s) is within the limit (172800.0s)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,043 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 00:01:08] 2025-11-25 21:15:12,048 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3279.3699374999987
[2025-11-26 00:01:08] 2025-11-25 21:15:12,060 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895386556/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,060 | INFO     | extracted standard info from prmon json
[2025-11-26 00:01:08] 2025-11-25 21:15:12,060 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 00:01:08] 2025-11-25 21:15:12,060 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 00:01:08] 2025-11-25 21:15:12,074 | INFO     | fitting pss+swap vs Time
[2025-11-26 00:01:08] 2025-11-25 21:15:12,076 | INFO     | sum of square deviations: 269238136797.61798
[2025-11-26 00:01:08] 2025-11-25 21:15:12,110 | INFO     | sum of deviations: 1897887948611.2441
[2025-11-26 00:01:08] 2025-11-25 21:15:12,111 | INFO     | mean x: 1764076225.4696016
[2025-11-26 00:01:08] 2025-11-25 21:15:12,111 | INFO     | mean y: 2861846.6981132077
[2025-11-26 00:01:08] 2025-11-25 21:15:12,111 | INFO     | intersect: -12432297037.449944
[2025-11-26 00:01:08] 2025-11-25 21:15:12,111 | INFO     | chi2: 17.368771966497512
[2025-11-26 00:01:08] 2025-11-25 21:15:12,112 | INFO     | sum of square deviations: 265027682080.6195
[2025-11-26 00:01:08] 2025-11-25 21:15:12,156 | INFO     | sum of deviations: 2225874078791.74
[2025-11-26 00:01:08] 2025-11-25 21:15:12,156 | INFO     | mean x: 1764076072.979979
[2025-11-26 00:01:08] 2025-11-25 21:15:12,156 | INFO     | mean y: 2873720.8809272917
[2025-11-26 00:01:08] 2025-11-25 21:15:12,157 | INFO     | intersect: -14812979374.300333
[2025-11-26 00:01:08] 2025-11-25 21:15:12,157 | INFO     | chi2: 14.042553903672005
[2025-11-26 00:01:08] 2025-11-25 21:15:12,157 | INFO     | current chi2=14.042553903672005 (change=19.15056556238647 %)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,157 | INFO     | right removable region: 948
[2025-11-26 00:01:08] 2025-11-25 21:15:12,158 | INFO     | sum of square deviations: 265026535890.61963
[2025-11-26 00:01:08] 2025-11-25 21:15:12,223 | INFO     | sum of deviations: 1528359390622.2039
[2025-11-26 00:01:08] 2025-11-25 21:15:12,224 | INFO     | mean x: 1764076377.979979
[2025-11-26 00:01:08] 2025-11-25 21:15:12,224 | INFO     | mean y: 2875226.1159114856
[2025-11-26 00:01:08] 2025-11-25 21:15:12,224 | INFO     | intersect: -10170229474.513927
[2025-11-26 00:01:08] 2025-11-25 21:15:12,225 | INFO     | chi2: 13.309335762806434
[2025-11-26 00:01:08] 2025-11-25 21:15:12,225 | INFO     | current chi2=13.309335762806434 (change=23.372039264038314 %)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,225 | INFO     | left removable region: 10
[2025-11-26 00:01:08] 2025-11-25 21:15:12,226 | INFO     | sum of square deviations: 255917435950.49048
[2025-11-26 00:01:08] 2025-11-25 21:15:12,267 | INFO     | sum of deviations: 1558048022474.8438
[2025-11-26 00:01:08] 2025-11-25 21:15:12,267 | INFO     | mean x: 1764076347.5031984
[2025-11-26 00:01:08] 2025-11-25 21:15:12,267 | INFO     | mean y: 2902539.8859275053
[2025-11-26 00:01:08] 2025-11-25 21:15:12,267 | INFO     | intersect: -10736950547.942478
[2025-11-26 00:01:08] 2025-11-25 21:15:12,268 | INFO     | chi2: 5.752042660951677
[2025-11-26 00:01:08] 2025-11-25 21:15:12,268 | INFO     | current memory leak: 6.09 B/s (using 938 data points, chi2=5.75)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,269 | INFO     | could have reported an average CPU frequency of 3269 MHz (35 samples)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,269 | INFO     | ..............................
[2025-11-26 00:01:08] 2025-11-25 21:15:12,269 | INFO     | . Timing measurements:
[2025-11-26 00:01:08] 2025-11-25 21:15:12,269 | INFO     | . get job = 0 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,270 | INFO     | . initial setup = 3 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,270 | INFO     | . payload setup = 15 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,270 | INFO     | . stage-in = 0 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,270 | INFO     | . payload execution = 58154 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,270 | INFO     | . stage-out = 4 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,270 | INFO     | . log creation = 1 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,270 | INFO     | ..............................
[2025-11-26 00:01:08] 2025-11-25 21:15:12,597 | INFO     | 
[2025-11-26 00:01:08] 2025-11-25 21:15:12,597 | INFO     | job summary report
[2025-11-26 00:01:08] 2025-11-25 21:15:12,597 | INFO     | --------------------------------------------------
[2025-11-26 00:01:08] 2025-11-25 21:15:12,597 | INFO     | PanDA job id: 6895386556
[2025-11-26 00:01:08] 2025-11-25 21:15:12,597 | INFO     | task id: 47556149
[2025-11-26 00:01:08] 2025-11-25 21:15:12,597 | INFO     | errors: (none)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | pilot state: finished 
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | transexitcode: 0
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | exeerrorcode: 0
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | exeerrordiag: 
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | exitcode: 0
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | exitmsg: OK
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | cpuconsumptiontime: 195610 s
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | nevents: 1000
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | neventsw: 0
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | pid: 3261664
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | pgrp: 3261664
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | corecount: 8
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | event service: False
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | sizes: {0: 2283431, 1: 2284287, 12: 2284287, 13: 2284577, 23: 2284633, 58170: 2336225, 58171: 2336352, 58176: 2345407, 58178: 2345463, 58185: 2345709}
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | --------------------------------------------------
[2025-11-26 00:01:08] 2025-11-25 21:15:12,598 | INFO     | 
[2025-11-26 00:01:08] 2025-11-25 21:15:12,599 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 00:01:08] 2025-11-25 21:15:12,630 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,632 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 00:01:08] 2025-11-25 21:15:12,632 | INFO     | job 6895386556 has completed (purged errors)
[2025-11-26 00:01:08] 2025-11-25 21:15:12,632 | INFO     | overall cleanup function is called
[2025-11-26 00:01:08] 2025-11-25 21:15:13,651 | INFO     | --- collectZombieJob: --- 10, [3261664]
[2025-11-26 00:01:08] 2025-11-25 21:15:13,651 | INFO     | zombie collector waiting for pid 3261664
[2025-11-26 00:01:08] 2025-11-25 21:15:13,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 00:01:08] 2025-11-25 21:15:13,652 | INFO     | collected zombie processes
[2025-11-26 00:01:08] 2025-11-25 21:15:13,652 | INFO     | will attempt to kill all subprocesses of pid=3261664
[2025-11-26 00:01:08] 2025-11-25 21:15:14,333 | INFO     | process IDs to be killed: [3261664] (in reverse order)
[2025-11-26 00:01:08] 2025-11-25 21:15:14,511 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 00:01:08] 2025-11-25 21:15:14,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 00:01:08] 2025-11-25 21:15:14,525 | INFO     | did not find any defunct processes belonging to 3261664
[2025-11-26 00:01:08] 2025-11-25 21:15:14,540 | INFO     | did not find any defunct processes belonging to 3261664
[2025-11-26 00:01:08] 2025-11-25 21:15:14,541 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 00:01:08] 2025-11-25 21:15:14,541 | INFO     | ready for new job
[2025-11-26 00:01:08] 2025-11-25 21:15:14,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 00:01:08] 2025-11-25 21:15:14,551 | INFO     | ***************************************
[2025-11-26 00:01:08] 2025-11-25 21:15:14,552 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 00:01:08] 2025-11-25 21:15:14,552 | INFO     | ***************************************
[2025-11-26 00:01:08] 2025-11-25 21:15:14,552 | INFO     | 
[2025-11-26 00:01:08] 2025-11-25 21:15:14,559 | INFO     | architecture information:
[2025-11-26 00:01:08] 2025-11-25 21:15:14,569 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:01:08] 2025-11-25 21:15:14,623 | INFO     | cat /etc/os-release:
[2025-11-26 00:01:08] NAME="CentOS Linux"
[2025-11-26 00:01:08] VERSION="7 (Core)"
[2025-11-26 00:01:08] ID="centos"
[2025-11-26 00:01:08] ID_LIKE="rhel fedora"
[2025-11-26 00:01:08] VERSION_ID="7"
[2025-11-26 00:01:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:01:08] ANSI_COLOR="0;31"
[2025-11-26 00:01:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:01:08] HOME_URL="https://www.centos.org/"
[2025-11-26 00:01:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:01:08] 
[2025-11-26 00:01:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:01:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:01:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:01:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:01:08] 
[2025-11-26 00:01:08] 2025-11-25 21:15:14,624 | INFO     | ***************************************
[2025-11-26 00:01:08] 2025-11-25 21:15:15,128 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 00:01:08] 2025-11-25 21:15:15,150 | INFO     | sufficient remaining disk space (77965819904 B)
[2025-11-26 00:01:08] 2025-11-25 21:15:15,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:01:08] 2025-11-25 21:15:15,150 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:01:08] 2025-11-25 21:15:15,150 | INFO     | update_server=False
[2025-11-26 00:01:08] 2025-11-25 21:15:15,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:01:08] 2025-11-25 21:15:15,536 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 00:01:08] 2025-11-25 21:15:15,536 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 00:01:08] 2025-11-25 21:15:15,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:01:08] 2025-11-25 21:15:15,536 | INFO     | will abort loop
[2025-11-26 00:01:08] 2025-11-25 21:15:15,547 | INFO     | all data control threads have been joined
[2025-11-26 00:01:08] 2025-11-25 21:15:15,787 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:01:08] 2025-11-25 21:15:15,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:01:08] 2025-11-25 21:15:16,040 | INFO     | all payload control threads have been joined
[2025-11-26 00:01:08] 2025-11-25 21:15:16,156 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:16,290 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:16,337 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:16,466 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:16,541 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:16,553 | INFO     | [data] control thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:16,758 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:16,866 | INFO     | all job control threads have been joined
[2025-11-26 00:01:08] 2025-11-25 21:15:17,045 | INFO     | [payload] control thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:17,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:17,155 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:17,508 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:17,509 | INFO     | [job] validate thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:17,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:01:08] 2025-11-25 21:15:17,872 | INFO     | [job] control thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:17,891 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:18,527 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:19,809 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:01:08] 2025-11-25 21:15:40,341 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:01:08] 2025-11-25 21:15:41,368 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625082586944)>', '<ExcThread(monitor, started 139624588490496)>']
[2025-11-26 00:01:08] 2025-11-25 21:15:45,123 | INFO     | PID=3233330 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 00:01:08] 2025-11-25 21:15:45,123 | INFO     | .. there are 22 such processes running
[2025-11-26 00:01:08] 2025-11-25 21:15:45,123 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:01:08] 2025-11-25 21:15:45,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:01:08] 2025-11-25 21:15:45,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:01:08] 2025-11-25 21:15:45,123 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:01:08] 2025-11-25 21:15:45,123 | INFO     | [monitor] control thread has ended
[2025-11-26 00:01:08] 2025-11-25 21:15:46,394 | INFO     | all workflow threads have been joined
[2025-11-26 00:01:08] 2025-11-25 21:15:46,394 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:01:08] 2025-11-25 21:15:46,394 | INFO     | traces error code: 0
[2025-11-26 00:01:08] 2025-11-25 21:15:46,394 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:01:08] 2025-11-25 21:15:47,106 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:01:08] 2025-11-25 21:15:47,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:01:08] 2025-11-25 21:15:47,116 [wrapper] pilotpid: 3233330
[2025-11-26 00:01:08] 2025-11-25 21:15:47,120 [wrapper] Pilot exit status: 0
[2025-11-26 00:01:08] 2025-11-25 21:15:47,150 [wrapper] pandaids: 6895386556
[2025-11-26 00:01:08] 2025-11-25 21:15:47,243 [wrapper] cleanup supervisor_pilot 1565518 3233331
[2025-11-26 00:01:08] 2025-11-25 21:15:47,246 [wrapper] Test setup, not cleaning
[2025-11-26 00:01:08] 2025-11-25 21:15:47,249 [wrapper] apfmon messages muted
[2025-11-26 00:01:08] 2025-11-25 21:15:47,254 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:01:08] 2025-11-25 21:15:47,263 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:01:08]  *** Error codes and diagnostics ***
[2025-11-26 00:01:08]     "exeErrorCode": 0,
[2025-11-26 00:01:08]     "exeErrorDiag": "",
[2025-11-26 00:01:08]     "pilotErrorCode": 0,
[2025-11-26 00:01:08]     "pilotErrorDiag": "",
[2025-11-26 00:01:08]  *** Listing of results directory ***
[2025-11-26 00:01:08] total 1315136
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:25 queuedata.json
[2025-11-26 00:01:08] -rwx------. 1 boincer umatlas     36292 Nov 24 00:25 runpilot2-wrapper.sh
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:01:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-26 00:01:08] -rw-r--r--. 2 boincer umatlas 411601483 Nov 25 00:04 EVNT.47483658._001246.pool.root.1
[2025-11-26 00:01:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-26 00:01:08] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:04 input.tar.gz
[2025-11-26 00:01:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:04 pandaJob.out
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas        57 Nov 25 00:04 setup.sh.local
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas    991801 Nov 25 00:04 agis_schedconf.cvmfs.json
[2025-11-26 00:01:08] drwx------. 5 boincer umatlas      4096 Nov 25 00:04 pilot3
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas       530 Nov 25 16:01 boinc_task_state.xml
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas 912841435 Nov 25 16:13 HITS.47556149._002327.pool.root.1
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas      1051 Nov 25 16:14 memory_monitor_summary.json
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas        95 Nov 25 16:14 pilot_heartbeat.json
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas   1516240 Nov 25 16:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas   2084155 Nov 25 16:15 log.47556149._002327.job.log.tgz.1
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas      8575 Nov 25 16:15 heartbeat.json
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas      5010 Nov 25 16:15 pilotlog.txt
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas   7084700 Nov 25 16:15 log.47556149._002327.job.log.1
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas       353 Nov 25 16:15 output.list
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas       620 Nov 25 16:15 runtime_log
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas   9185280 Nov 25 16:15 result.tar.gz
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas       660 Nov 25 16:15 WRPLDmAGeh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6TLKDmtYGTcm.diag
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 16:15 runtime_log.err
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas        27 Nov 26 00:01 wrapper_checkpoint.txt
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas      6903 Nov 26 00:01 init_data.xml
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 00:01 boinc_mmap_file
[2025-11-26 00:01:08] -rw-r--r--. 1 boincer umatlas     21786 Nov 26 00:01 stderr.txt
[2025-11-26 00:01:08] HITS file was successfully produced:
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas 912841435 Nov 25 16:13 shared/HITS.pool.root.1
[2025-11-26 00:01:08]  *** Contents of shared directory: ***
[2025-11-26 00:01:08] total 1302980
[2025-11-26 00:01:08] -rw-r--r--. 2 boincer umatlas 411601483 Nov 25 00:04 ATLAS.root_0
[2025-11-26 00:01:08] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:04 input.tar.gz
[2025-11-26 00:01:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas 912841435 Nov 25 16:13 HITS.pool.root.1
[2025-11-26 00:01:08] -rw-------. 1 boincer umatlas   9185280 Nov 25 16:15 result.tar.gz
00:01:09 (3216500): run_atlas exited; CPU time 195202.206071
00:01:09 (3216500): called boinc_finish(0)

</stderr_txt>
]]>

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