Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:14 (526405): wrapper (7.7.26015): starting
00:03:14 (526405): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:03:14] Arguments: --nthreads 12
[2025-11-25 00:03:14] Threads: 12
[2025-11-25 00:03:14] Checking for CVMFS
[2025-11-25 00:03:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:03:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:03:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:03:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:03:15] 2.13.2.0 6892 34829 168404 153270 0 326 39047089 40960001 23925 16776704 0 92825728 99.746 56479340 35456 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:03:15] CVMFS is ok
[2025-11-25 00:03:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:03:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:03:15] Further information can be found at the LHC@home message board.
[2025-11-25 00:03:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:03:15] Checking for apptainer binary...
[2025-11-25 00:03:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:03:15] Running /usr/bin/apptainer --version
[2025-11-25 00:03:15] apptainer version 1.4.4-1.el9
[2025-11-25 00:03:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:03:15] c-212-5.aglt2.org
[2025-11-25 00:03:15] apptainer works
[2025-11-25 00:03:15] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:03:15] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:03:15] Starting ATLAS job with PandaID=6895386421
[2025-11-25 00:03:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:58:27]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:58:27] 2025-11-26 02:57:39,854 | INFO     | monitor loop #5217: job 0:6895386421 is in state 'finished'
[2025-11-25 21:58:27] 2025-11-26 02:57:39,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:58:27] 2025-11-26 02:57:41,370 | INFO     | time since job start (78842s) is within the limit (172800.0s)
[2025-11-25 21:58:27] 2025-11-26 02:57:42,359 | INFO     | monitor loop #5218: job 0:6895386421 is in state 'finished'
[2025-11-25 21:58:27] 2025-11-26 02:57:42,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:58:27] 2025-11-26 02:57:43,382 | INFO     | time since job start (78844s) is within the limit (172800.0s)
[2025-11-25 21:58:27] 2025-11-26 02:57:44,863 | INFO     | monitor loop #5219: job 0:6895386421 is in state 'finished'
[2025-11-25 21:58:27] 2025-11-26 02:57:44,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:58:27] 2025-11-26 02:57:45,391 | INFO     | time since job start (78846s) is within the limit (172800.0s)
[2025-11-25 21:58:27] 2025-11-26 02:57:46,970 | INFO     | PID=532961 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 21:58:27] 2025-11-26 02:57:46,970 | INFO     | .. there are 18 such processes running
[2025-11-25 21:58:27] 2025-11-26 02:57:47,389 | INFO     | monitor loop #5220: job 0:6895386421 is in state 'finished'
[2025-11-25 21:58:27] 2025-11-26 02:57:47,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:58:27] 2025-11-26 02:57:47,972 | INFO     | time since job start (78848s) is within the limit (172800.0s)
[2025-11-25 21:58:27] 2025-11-26 02:57:49,901 | INFO     | monitor loop #5221: job 0:6895386421 is in state 'finished'
[2025-11-25 21:58:27] 2025-11-26 02:57:49,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:58:27] 2025-11-26 02:57:49,980 | INFO     | time since job start (78850s) is within the limit (172800.0s)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,065 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:58:27] 2025-11-26 02:57:50,070 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2969.2903854166666
[2025-11-25 21:58:27] 2025-11-26 02:57:50,086 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895386421/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,086 | INFO     | extracted standard info from prmon json
[2025-11-25 21:58:27] 2025-11-26 02:57:50,086 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:58:27] 2025-11-26 02:57:50,087 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:58:27] 2025-11-26 02:57:50,104 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:58:27] 2025-11-26 02:57:50,106 | INFO     | sum of square deviations: 668690263369.3933
[2025-11-25 21:58:27] 2025-11-26 02:57:50,141 | INFO     | sum of deviations: 33782273111670.727
[2025-11-25 21:58:27] 2025-11-26 02:57:50,141 | INFO     | mean x: 1764086449.0216718
[2025-11-25 21:58:27] 2025-11-26 02:57:50,141 | INFO     | mean y: 6048450.226006192
[2025-11-25 21:58:27] 2025-11-26 02:57:50,141 | INFO     | intersect: -89115707133.83359
[2025-11-25 21:58:27] 2025-11-26 02:57:50,142 | INFO     | chi2: 34.651948331011845
[2025-11-25 21:58:27] 2025-11-26 02:57:50,144 | INFO     | sum of square deviations: 660957102712.4766
[2025-11-25 21:58:27] 2025-11-26 02:57:50,178 | INFO     | sum of deviations: 34824897795141.215
[2025-11-25 21:58:27] 2025-11-26 02:57:50,178 | INFO     | mean x: 1764086296.5314686
[2025-11-25 21:58:27] 2025-11-26 02:57:50,178 | INFO     | mean y: 6069008.204351204
[2025-11-25 21:58:27] 2025-11-26 02:57:50,178 | INFO     | intersect: -92941150601.66205
[2025-11-25 21:58:27] 2025-11-26 02:57:50,179 | INFO     | chi2: 29.798189658876822
[2025-11-25 21:58:27] 2025-11-26 02:57:50,179 | INFO     | current chi2=29.798189658876822 (change=14.007173927911982 %)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,179 | INFO     | right removable region: 1286
[2025-11-25 21:58:27] 2025-11-26 02:57:50,181 | INFO     | sum of square deviations: 660955272598.5983
[2025-11-25 21:58:27] 2025-11-26 02:57:50,215 | INFO     | sum of deviations: 32860285860137.605
[2025-11-25 21:58:27] 2025-11-26 02:57:50,215 | INFO     | mean x: 1764086601.5299146
[2025-11-25 21:58:27] 2025-11-26 02:57:50,215 | INFO     | mean y: 6066619.634032634
[2025-11-25 21:58:27] 2025-11-26 02:57:50,216 | INFO     | intersect: -87697886146.1928
[2025-11-25 21:58:27] 2025-11-26 02:57:50,217 | INFO     | chi2: 32.219669164076734
[2025-11-25 21:58:27] 2025-11-26 02:57:50,217 | INFO     | current chi2=32.219669164076734 (change=7.019170015206147 %)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,217 | INFO     | left removable region: 10
[2025-11-25 21:58:27] 2025-11-26 02:57:50,218 | INFO     | sum of square deviations: 644151498431.5419
[2025-11-25 21:58:27] 2025-11-26 02:57:50,251 | INFO     | sum of deviations: 33470352317306.78
[2025-11-25 21:58:27] 2025-11-26 02:57:50,251 | INFO     | mean x: 1764086571.0438871
[2025-11-25 21:58:27] 2025-11-26 02:57:50,251 | INFO     | mean y: 6104140.432601881
[2025-11-25 21:58:27] 2025-11-26 02:57:50,251 | INFO     | intersect: -91656492616.44444
[2025-11-25 21:58:27] 2025-11-26 02:57:50,252 | INFO     | chi2: 26.033277064814484
[2025-11-25 21:58:27] 2025-11-26 02:57:50,252 | INFO     | current memory leak: 51.96 B/s (using 1276 data points, chi2=26.03)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,253 | INFO     | could have reported an average CPU frequency of 3016 MHz (47 samples)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,253 | INFO     | ..............................
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . Timing measurements:
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . get job = 0 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . initial setup = 2 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . payload setup = 15 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . stage-in = 0 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . payload execution = 78782 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . stage-out = 6 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | . log creation = 1 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,254 | INFO     | ..............................
[2025-11-25 21:58:27] 2025-11-26 02:57:50,335 | INFO     | 
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | job summary report
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | --------------------------------------------------
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | PanDA job id: 6895386421
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | task id: 47556149
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | errors: (none)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | pilot state: finished 
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | transexitcode: 0
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | exeerrorcode: 0
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | exeerrordiag: 
[2025-11-25 21:58:27] 2025-11-26 02:57:50,343 | INFO     | exitcode: 0
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | exitmsg: OK
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | cpuconsumptiontime: 216795 s
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | nevents: 1000
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | neventsw: 0
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | pid: 549378
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | pgrp: 549378
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | corecount: 12
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | event service: False
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | sizes: {0: 2284139, 1: 2284338, 9: 2284600, 11: 2284628, 78800: 2347369, 78801: 2347368, 78807: 2356551, 78811: 2356607, 78830: 2356853}
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | --------------------------------------------------
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | 
[2025-11-25 21:58:27] 2025-11-26 02:57:50,344 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-25 21:58:27] 2025-11-26 02:57:50,389 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,389 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,389 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:58:27] 2025-11-26 02:57:50,391 | INFO     | job 6895386421 has completed (purged errors)
[2025-11-25 21:58:27] 2025-11-26 02:57:50,391 | INFO     | overall cleanup function is called
[2025-11-25 21:58:27] 2025-11-26 02:57:51,430 | INFO     | --- collectZombieJob: --- 10, [549378]
[2025-11-25 21:58:27] 2025-11-26 02:57:51,430 | INFO     | zombie collector waiting for pid 549378
[2025-11-25 21:58:27] 2025-11-26 02:57:51,430 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:58:27] 2025-11-26 02:57:51,430 | INFO     | collected zombie processes
[2025-11-25 21:58:27] 2025-11-26 02:57:51,430 | INFO     | will attempt to kill all subprocesses of pid=549378
[2025-11-25 21:58:27] 2025-11-26 02:57:51,998 | INFO     | process IDs to be killed: [549378] (in reverse order)
[2025-11-25 21:58:27] 2025-11-26 02:57:52,293 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:58:27] 2025-11-26 02:57:52,314 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:58:27] 2025-11-26 02:57:52,399 | INFO     | did not find any defunct processes belonging to 549378
[2025-11-25 21:58:27] 2025-11-26 02:57:52,464 | INFO     | did not find any defunct processes belonging to 549378
[2025-11-25 21:58:27] 2025-11-26 02:57:52,466 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:58:27] 2025-11-26 02:57:52,466 | INFO     | ready for new job
[2025-11-25 21:58:27] 2025-11-26 02:57:52,466 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:58:27] 2025-11-26 02:57:52,475 | INFO     | ***************************************
[2025-11-25 21:58:27] 2025-11-26 02:57:52,475 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:58:27] 2025-11-26 02:57:52,475 | INFO     | ***************************************
[2025-11-25 21:58:27] 2025-11-26 02:57:52,475 | INFO     | 
[2025-11-25 21:58:27] 2025-11-26 02:57:52,482 | INFO     | architecture information:
[2025-11-25 21:58:27] 2025-11-26 02:57:52,483 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:58:27] 2025-11-26 02:57:52,506 | INFO     | cat /etc/os-release:
[2025-11-25 21:58:27] NAME="CentOS Linux"
[2025-11-25 21:58:27] VERSION="7 (Core)"
[2025-11-25 21:58:27] ID="centos"
[2025-11-25 21:58:27] ID_LIKE="rhel fedora"
[2025-11-25 21:58:27] VERSION_ID="7"
[2025-11-25 21:58:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:58:27] ANSI_COLOR="0;31"
[2025-11-25 21:58:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:58:27] HOME_URL="https://www.centos.org/"
[2025-11-25 21:58:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:58:27] 
[2025-11-25 21:58:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:58:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:58:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:58:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:58:27] 
[2025-11-25 21:58:27] 2025-11-26 02:57:52,506 | INFO     | ***************************************
[2025-11-25 21:58:27] 2025-11-26 02:57:53,010 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-25 21:58:27] 2025-11-26 02:57:53,126 | INFO     | sufficient remaining disk space (121465995264 B)
[2025-11-25 21:58:27] 2025-11-26 02:57:53,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:58:27] 2025-11-26 02:57:53,126 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:58:27] 2025-11-26 02:57:53,126 | INFO     | update_server=False
[2025-11-25 21:58:27] 2025-11-26 02:57:53,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:58:27] 2025-11-26 02:57:53,127 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:58:27] 2025-11-26 02:57:53,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:58:27] 2025-11-26 02:57:53,425 | INFO     | aborting loop
[2025-11-25 21:58:27] 2025-11-26 02:57:53,458 | INFO     | all data control threads have been joined
[2025-11-25 21:58:27] 2025-11-26 02:57:53,660 | INFO     | all payload control threads have been joined
[2025-11-25 21:58:27] 2025-11-26 02:57:54,013 | INFO     | all job control threads have been joined
[2025-11-25 21:58:27] 2025-11-26 02:57:54,133 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:54,432 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:54,464 | INFO     | [data] control thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:54,666 | INFO     | [payload] control thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:54,763 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:54,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,019 | INFO     | [job] control thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:58:27] 2025-11-26 02:57:55,135 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,297 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,305 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,313 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:58:27] 2025-11-26 02:57:55,536 | INFO     | [job] validate thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,714 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,714 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:55,963 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:58:27] 2025-11-26 02:57:56,364 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:57:59,143 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:58:27] 2025-11-26 02:58:00,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140696560809792)>', '<ExcThread(monitor, started 140696048613120)>']
[2025-11-25 21:58:27] 2025-11-26 02:58:05,192 | INFO     | all workflow threads have been joined
[2025-11-25 21:58:27] 2025-11-26 02:58:05,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:58:27] 2025-11-26 02:58:05,200 | INFO     | traces error code: 0
[2025-11-25 21:58:27] 2025-11-26 02:58:05,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:58:27] 2025-11-26 02:58:25,299 | INFO     | PID=532961 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 21:58:27] 2025-11-26 02:58:25,299 | INFO     | .. there are 18 such processes running
[2025-11-25 21:58:27] 2025-11-26 02:58:25,299 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:58:27] 2025-11-26 02:58:25,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:58:27] 2025-11-26 02:58:25,300 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:58:27] 2025-11-26 02:58:25,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:58:27] 2025-11-26 02:58:25,300 | INFO     | [monitor] control thread has ended
[2025-11-25 21:58:27] 2025-11-26 02:58:25,784 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:58:27] 2025-11-26 02:58:25,814 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:58:27] 2025-11-26 02:58:25,839 [wrapper] pilotpid: 532961
[2025-11-25 21:58:27] 2025-11-26 02:58:25,850 [wrapper] Pilot exit status: 0
[2025-11-25 21:58:27] 2025-11-26 02:58:26,038 [wrapper] pandaids: 6895386421
[2025-11-25 21:58:27] 2025-11-26 02:58:26,429 [wrapper] cleanup supervisor_pilot 4177229 532962
[2025-11-25 21:58:27] 2025-11-26 02:58:26,441 [wrapper] Test setup, not cleaning
[2025-11-25 21:58:27] 2025-11-26 02:58:26,485 [wrapper] apfmon messages muted
[2025-11-25 21:58:27] 2025-11-26 02:58:26,508 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:58:27] 2025-11-26 02:58:26,519 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:58:27]  *** Error codes and diagnostics ***
[2025-11-25 21:58:27]     "exeErrorCode": 0,
[2025-11-25 21:58:27]     "exeErrorDiag": "",
[2025-11-25 21:58:27]     "pilotErrorCode": 0,
[2025-11-25 21:58:27]     "pilotErrorDiag": "",
[2025-11-25 21:58:27]  *** Listing of results directory ***
[2025-11-25 21:58:27] total 1341036
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-25 21:58:27] -rwx------. 1 boincer umatlas     36292 Nov 24 00:18 runpilot2-wrapper.sh
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:58:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:03 run_atlas
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:03 job.xml
[2025-11-25 21:58:27] -rw-r--r--. 2 boincer umatlas 408941869 Nov 25 00:03 EVNT.47483658._001241.pool.root.1
[2025-11-25 21:58:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:03 shared
[2025-11-25 21:58:27] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 00:03 input.tar.gz
[2025-11-25 21:58:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:03 boinc_lockfile
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:03 pandaJob.out
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas        57 Nov 25 00:03 setup.sh.local
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas    991801 Nov 25 00:03 agis_schedconf.cvmfs.json
[2025-11-25 21:58:27] drwx------. 5 boincer umatlas      4096 Nov 25 00:03 pilot3
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas       533 Nov 25 21:36 boinc_task_state.xml
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas      6947 Nov 25 21:45 init_data.xml
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas 933759447 Nov 25 21:56 HITS.47556149._002274.pool.root.1
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas      1078 Nov 25 21:57 memory_monitor_summary.json
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas   1516240 Nov 25 21:57 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas   2830671 Nov 25 21:57 log.47556149._002274.job.log.tgz.1
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas        95 Nov 25 21:57 pilot_heartbeat.json
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas      8642 Nov 25 21:57 heartbeat.json
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:58 boinc_mmap_file
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas       822 Nov 25 21:58 pilotlog.txt
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas        29 Nov 25 21:58 wrapper_checkpoint.txt
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas  10466862 Nov 25 21:58 log.47556149._002274.job.log.1
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas       353 Nov 25 21:58 output.list
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas       620 Nov 25 21:58 runtime_log
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas  13322240 Nov 25 21:58 result.tar.gz
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas      9340 Nov 25 21:58 runtime_log.err
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas       665 Nov 25 21:58 bcjNDml8dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgTLKDmF6S9Zm.diag
[2025-11-25 21:58:27] -rw-r--r--. 1 boincer umatlas     21863 Nov 25 21:58 stderr.txt
[2025-11-25 21:58:27] HITS file was successfully produced:
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas 933759447 Nov 25 21:56 shared/HITS.pool.root.1
[2025-11-25 21:58:27]  *** Contents of shared directory: ***
[2025-11-25 21:58:27] total 1324848
[2025-11-25 21:58:27] -rw-r--r--. 2 boincer umatlas 408941869 Nov 25 00:03 ATLAS.root_0
[2025-11-25 21:58:27] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 00:03 input.tar.gz
[2025-11-25 21:58:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas 933759447 Nov 25 21:56 HITS.pool.root.1
[2025-11-25 21:58:27] -rw-------. 1 boincer umatlas  13322240 Nov 25 21:58 result.tar.gz
21:58:29 (526405): run_atlas exited; CPU time 216569.339131
21:58:29 (526405): called boinc_finish(0)

</stderr_txt>
]]>

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