Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:32 (806286): wrapper (7.7.26015): starting
00:04:32 (806286): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:32] Arguments: --nthreads 9
[2025-11-26 00:04:32] Threads: 9
[2025-11-26 00:04:32] Checking for CVMFS
[2025-11-26 00:04:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:34] 2.13.3.0 12601 29607 380508 153309 2 561 27447163 32935937 35959 16776704 0 140385443 99.492 176518890 33964 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:04:34] CVMFS is ok
[2025-11-26 00:04:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:34] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:34] Checking for apptainer binary...
[2025-11-26 00:04:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:34] Running /usr/bin/apptainer --version
[2025-11-26 00:04:34] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:35] c6-12-27-4.aglt2.org
[2025-11-26 00:04:35] apptainer works
[2025-11-26 00:04:35] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:35] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:35] Starting ATLAS job with PandaID=6896044001
[2025-11-26 00:04:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:10:03 (629818): wrapper (7.7.26015): starting
14:10:03 (629818): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 14:10:03] Arguments: --nthreads 10
[2025-11-26 14:10:03] Threads: 10
[2025-11-26 14:10:03] This job has been restarted, cleaning up previous attempt
[2025-11-26 14:10:03] Checking for CVMFS
[2025-11-26 14:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:10:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:10:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:10:04] 2.13.3.0 12601 30452 364708 153332 3 110 31366122 32935937 33116 16776704 0 145660605 99.494 182992717 33903 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:10:04] CVMFS is ok
[2025-11-26 14:10:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:10:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:10:04] Further information can be found at the LHC@home message board.
[2025-11-26 14:10:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:10:04] Checking for apptainer binary...
[2025-11-26 14:10:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:10:04] Running /usr/bin/apptainer --version
[2025-11-26 14:10:04] apptainer version 1.4.4-1.el9
[2025-11-26 14:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:10:04] c6-12-27-4.aglt2.org
[2025-11-26 14:10:04] apptainer works
[2025-11-26 14:10:04] Set ATHENA_PROC_NUMBER=10
[2025-11-26 14:10:04] Set ATHENA_CORE_NUMBER=10
[2025-11-26 14:10:04] Starting ATLAS job with PandaID=6896044001
[2025-11-26 14:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:30:27]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:30:27] 2025-11-27 21:29:44,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:30:27] 2025-11-27 21:29:44,376 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:30:27] 2025-11-27 21:29:44,413 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2638.9274999999993
[2025-11-27 16:30:27] 2025-11-27 21:29:44,432 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896044001/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:30:27] 2025-11-27 21:29:44,432 | INFO     | extracted standard info from prmon json
[2025-11-27 16:30:27] 2025-11-27 21:29:44,433 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:30:27] 2025-11-27 21:29:44,433 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:30:27] 2025-11-27 21:29:44,503 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:30:27] 2025-11-27 21:29:44,507 | INFO     | sum of square deviations: 1161394826686.4922
[2025-11-27 16:30:27] 2025-11-27 21:29:44,581 | INFO     | sum of deviations: 5994546625973.475
[2025-11-27 16:30:27] 2025-11-27 21:29:44,582 | INFO     | mean x: 1764231600.7237604
[2025-11-27 16:30:27] 2025-11-27 21:29:44,582 | INFO     | mean y: 3235466.152607856
[2025-11-27 16:30:27] 2025-11-27 21:29:44,582 | INFO     | intersect: -9102856920.815834
[2025-11-27 16:30:27] 2025-11-27 21:29:44,584 | INFO     | chi2: 8.113304876962129
[2025-11-27 16:30:27] 2025-11-27 21:29:44,586 | INFO     | sum of square deviations: 1150214269934.2805
[2025-11-27 16:30:27] 2025-11-27 21:29:44,689 | INFO     | sum of deviations: 6604430917526.714
[2025-11-27 16:30:27] 2025-11-27 21:29:44,690 | INFO     | mean x: 1764231448.2325583
[2025-11-27 16:30:27] 2025-11-27 21:29:44,690 | INFO     | mean y: 3243784.0258397935
[2025-11-27 16:30:27] 2025-11-27 21:29:44,690 | INFO     | intersect: -10126820697.825687
[2025-11-27 16:30:27] 2025-11-27 21:29:44,696 | INFO     | chi2: 4.746814805315997
[2025-11-27 16:30:27] 2025-11-27 21:29:44,697 | INFO     | current chi2=4.746814805315997 (change=41.49344962008441 %)
[2025-11-27 16:30:27] 2025-11-27 21:29:44,703 | INFO     | sum of square deviations: 1139105714531.8213
[2025-11-27 16:30:27] 2025-11-27 21:29:44,792 | INFO     | sum of deviations: 6894806217699.3955
[2025-11-27 16:30:27] 2025-11-27 21:29:44,793 | INFO     | mean x: 1764231295.7414129
[2025-11-27 16:30:27] 2025-11-27 21:29:44,793 | INFO     | mean y: 3247769.2942320155
[2025-11-27 16:30:27] 2025-11-27 21:29:44,793 | INFO     | intersect: -10675333465.229061
[2025-11-27 16:30:27] 2025-11-27 21:29:44,795 | INFO     | chi2: 3.8177378543999505
[2025-11-27 16:30:27] 2025-11-27 21:29:44,795 | INFO     | current chi2=3.8177378543999505 (change=19.57263952820669 %)
[2025-11-27 16:30:27] 2025-11-27 21:29:44,795 | INFO     | right removable region: 1542
[2025-11-27 16:30:27] 2025-11-27 21:29:44,797 | INFO     | sum of square deviations: 1150211784127.7427
[2025-11-27 16:30:27] 2025-11-27 21:29:44,924 | INFO     | sum of deviations: 5458075539540.963
[2025-11-27 16:30:27] 2025-11-27 21:29:44,951 | INFO     | mean x: 1764231753.2319121
[2025-11-27 16:30:27] 2025-11-27 21:29:44,952 | INFO     | mean y: 3242777.543281654
[2025-11-27 16:30:27] 2025-11-27 21:29:44,952 | INFO     | intersect: -8368528674.701842
[2025-11-27 16:30:27] 2025-11-27 21:29:44,954 | INFO     | chi2: 5.469834504521121
[2025-11-27 16:30:27] 2025-11-27 21:29:44,954 | INFO     | current chi2=5.469834504521121 (change=32.581918373943864 %)
[2025-11-27 16:30:27] 2025-11-27 21:29:44,982 | INFO     | sum of square deviations: 1139101404670.1191
[2025-11-27 16:30:27] 2025-11-27 21:29:45,109 | INFO     | sum of deviations: 5263138386652.758
[2025-11-27 16:30:27] 2025-11-27 21:29:45,109 | INFO     | mean x: 1764231905.73558
[2025-11-27 16:30:27] 2025-11-27 21:29:45,109 | INFO     | mean y: 3245453.202851588
[2025-11-27 16:30:27] 2025-11-27 21:29:45,110 | INFO     | intersect: -8148264700.297054
[2025-11-27 16:30:27] 2025-11-27 21:29:45,116 | INFO     | chi2: 5.280254479386362
[2025-11-27 16:30:27] 2025-11-27 21:29:45,116 | INFO     | current chi2=5.280254479386362 (change=3.465918849611649 %)
[2025-11-27 16:30:27] 2025-11-27 21:29:45,116 | INFO     | left removable region: 20
[2025-11-27 16:30:27] 2025-11-27 21:29:45,122 | INFO     | sum of square deviations: 1093223001001.9241
[2025-11-27 16:30:27] 2025-11-27 21:29:45,340 | INFO     | sum of deviations: 5893851290116.582
[2025-11-27 16:30:27] 2025-11-27 21:29:45,340 | INFO     | mean x: 1764231875.261498
[2025-11-27 16:30:27] 2025-11-27 21:29:45,340 | INFO     | mean y: 3263100.438239159
[2025-11-27 16:30:27] 2025-11-27 21:29:45,341 | INFO     | intersect: -9508172630.922188
[2025-11-27 16:30:27] 2025-11-27 21:29:45,342 | INFO     | chi2: 0.6127850880507499
[2025-11-27 16:30:27] 2025-11-27 21:29:45,343 | INFO     | current memory leak: 5.39 B/s (using 1522 data points, chi2=0.61)
[2025-11-27 16:30:27] 2025-11-27 21:29:45,345 | INFO     | could have reported an average CPU frequency of 2633 MHz (55 samples)
[2025-11-27 16:30:27] 2025-11-27 21:29:45,345 | INFO     | ..............................
[2025-11-27 16:30:27] 2025-11-27 21:29:45,345 | INFO     | . Timing measurements:
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | . get job = 0 s
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | . initial setup = 2 s
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | . payload setup = 9 s
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | . stage-in = 0 s
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | . payload execution = 94713 s
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | . stage-out = 6 s
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | . log creation = 1 s
[2025-11-27 16:30:27] 2025-11-27 21:29:45,346 | INFO     | ..............................
[2025-11-27 16:30:27] 2025-11-27 21:29:46,223 | INFO     | 
[2025-11-27 16:30:27] 2025-11-27 21:29:46,223 | INFO     | job summary report
[2025-11-27 16:30:27] 2025-11-27 21:29:46,223 | INFO     | --------------------------------------------------
[2025-11-27 16:30:27] 2025-11-27 21:29:46,223 | INFO     | PanDA job id: 6896044001
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | task id: 47556185
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | errors: (none)
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | pilot state: finished 
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | transexitcode: 0
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | exeerrorcode: 0
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | exeerrordiag: 
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | exitcode: 0
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | exitmsg: OK
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | cpuconsumptiontime: 272325 s
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | nevents: 1000
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | neventsw: 0
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | pid: 698283
[2025-11-27 16:30:27] 2025-11-27 21:29:46,224 | INFO     | pgrp: 698283
[2025-11-27 16:30:27] 2025-11-27 21:29:46,225 | INFO     | corecount: 10
[2025-11-27 16:30:27] 2025-11-27 21:29:46,225 | INFO     | event service: False
[2025-11-27 16:30:27] 2025-11-27 21:29:46,225 | INFO     | sizes: {0: 2284246, 7: 2284508, 11: 2284536, 94726: 2351856, 94734: 2360906, 94746: 2361096}
[2025-11-27 16:30:27] 2025-11-27 21:29:46,225 | INFO     | --------------------------------------------------
[2025-11-27 16:30:27] 2025-11-27 21:29:46,225 | INFO     | 
[2025-11-27 16:30:27] 2025-11-27 21:29:46,258 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 16:30:27] 2025-11-27 21:29:46,307 | INFO     | time since job start (94765s) is within the limit (172800.0s)
[2025-11-27 16:30:27] 2025-11-27 21:29:46,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | job 6896044001 has completed (purged errors)
[2025-11-27 16:30:27] 2025-11-27 21:29:46,356 | INFO     | overall cleanup function is called
[2025-11-27 16:30:27] 2025-11-27 21:29:47,394 | INFO     | --- collectZombieJob: --- 10, [698283]
[2025-11-27 16:30:27] 2025-11-27 21:29:47,394 | INFO     | zombie collector waiting for pid 698283
[2025-11-27 16:30:27] 2025-11-27 21:29:47,394 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:30:27] 2025-11-27 21:29:47,394 | INFO     | collected zombie processes
[2025-11-27 16:30:27] 2025-11-27 21:29:47,395 | INFO     | will attempt to kill all subprocesses of pid=698283
[2025-11-27 16:30:27] 2025-11-27 21:29:49,477 | INFO     | PID=652871 has CPU usage=22.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:30:27] 2025-11-27 21:29:49,478 | INFO     | .. there are 50 such processes running
[2025-11-27 16:30:27] 2025-11-27 21:29:49,515 | INFO     | process IDs to be killed: [698283] (in reverse order)
[2025-11-27 16:30:27] 2025-11-27 21:29:49,700 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:30:27] 2025-11-27 21:29:49,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:30:27] 2025-11-27 21:29:49,726 | INFO     | did not find any defunct processes belonging to 698283
[2025-11-27 16:30:27] 2025-11-27 21:29:49,772 | INFO     | did not find any defunct processes belonging to 698283
[2025-11-27 16:30:27] 2025-11-27 21:29:49,778 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:30:27] 2025-11-27 21:29:49,778 | INFO     | ready for new job
[2025-11-27 16:30:27] 2025-11-27 21:29:49,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:30:27] 2025-11-27 21:29:49,786 | INFO     | ***************************************
[2025-11-27 16:30:27] 2025-11-27 21:29:49,786 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:30:27] 2025-11-27 21:29:49,786 | INFO     | ***************************************
[2025-11-27 16:30:27] 2025-11-27 21:29:49,786 | INFO     | 
[2025-11-27 16:30:27] 2025-11-27 21:29:49,792 | INFO     | architecture information:
[2025-11-27 16:30:27] 2025-11-27 21:29:49,792 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:30:27] 2025-11-27 21:29:49,812 | INFO     | cat /etc/os-release:
[2025-11-27 16:30:27] NAME="CentOS Linux"
[2025-11-27 16:30:27] VERSION="7 (Core)"
[2025-11-27 16:30:27] ID="centos"
[2025-11-27 16:30:27] ID_LIKE="rhel fedora"
[2025-11-27 16:30:27] VERSION_ID="7"
[2025-11-27 16:30:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:30:27] ANSI_COLOR="0;31"
[2025-11-27 16:30:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:30:27] HOME_URL="https://www.centos.org/"
[2025-11-27 16:30:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:30:27] 
[2025-11-27 16:30:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:30:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:30:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:30:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:30:27] 
[2025-11-27 16:30:27] 2025-11-27 21:29:49,812 | INFO     | ***************************************
[2025-11-27 16:30:27] 2025-11-27 21:29:50,316 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 16:30:27] 2025-11-27 21:29:50,404 | INFO     | sufficient remaining disk space (93029662720 B)
[2025-11-27 16:30:27] 2025-11-27 21:29:50,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:30:27] 2025-11-27 21:29:50,405 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:30:27] 2025-11-27 21:29:50,405 | INFO     | update_server=False
[2025-11-27 16:30:27] 2025-11-27 21:29:50,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:30:27] 2025-11-27 21:29:50,405 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 16:30:27] 2025-11-27 21:29:50,406 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:30:27] 2025-11-27 21:29:50,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:30:27] 2025-11-27 21:29:50,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:30:27] 2025-11-27 21:29:50,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:30:27] 2025-11-27 21:29:50,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:30:27] 2025-11-27 21:29:50,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:30:27] 2025-11-27 21:29:50,427 | INFO     | aborting loop
[2025-11-27 16:30:27] 2025-11-27 21:29:50,612 | INFO     | all data control threads have been joined
[2025-11-27 16:30:27] 2025-11-27 21:29:50,809 | INFO     | all job control threads have been joined
[2025-11-27 16:30:27] 2025-11-27 21:29:51,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:30:27] 2025-11-27 21:29:51,411 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,434 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,494 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,619 | INFO     | [data] control thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,726 | INFO     | all payload control threads have been joined
[2025-11-27 16:30:27] 2025-11-27 21:29:51,815 | INFO     | [job] control thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,849 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,899 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,969 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:51,986 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:52,138 | INFO     | [job] validate thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:52,244 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:52,377 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:52,414 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:52,415 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:52,732 | INFO     | [payload] control thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:29:54,414 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:30:27] 2025-11-27 21:30:21,051 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:30:27] 2025-11-27 21:30:21,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139621149169472)>', '<ExcThread(monitor, started 139620511635200)>']
[2025-11-27 16:30:27] 2025-11-27 21:30:21,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:30:27] 2025-11-27 21:30:21,647 | INFO     | [monitor] control thread has ended
[2025-11-27 16:30:27] 2025-11-27 21:30:26,457 | INFO     | all workflow threads have been joined
[2025-11-27 16:30:27] 2025-11-27 21:30:26,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:30:27] 2025-11-27 21:30:26,458 | INFO     | traces error code: 0
[2025-11-27 16:30:27] 2025-11-27 21:30:26,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:30:27] 2025-11-27 21:30:27,480 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:30:27] 2025-11-27 21:30:27,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:30:27] 2025-11-27 21:30:27,486 [wrapper] pilotpid: 652871
[2025-11-27 16:30:27] 2025-11-27 21:30:27,488 [wrapper] Pilot exit status: 0
[2025-11-27 16:30:27] 2025-11-27 21:30:27,539 [wrapper] pandaids: 6896044001 6896044001
[2025-11-27 16:30:27] 2025-11-27 21:30:27,714 [wrapper] cleanup supervisor_pilot  140238 652872
[2025-11-27 16:30:27] 2025-11-27 21:30:27,728 [wrapper] Test setup, not cleaning
[2025-11-27 16:30:27] 2025-11-27 21:30:27,750 [wrapper] apfmon messages muted
[2025-11-27 16:30:27] 2025-11-27 21:30:27,775 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:30:27] 2025-11-27 21:30:27,792 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:30:27]  *** Error codes and diagnostics ***
[2025-11-27 16:30:27]     "exeErrorCode": 0,
[2025-11-27 16:30:27]     "exeErrorDiag": "",
[2025-11-27 16:30:27]     "pilotErrorCode": 0,
[2025-11-27 16:30:27]     "pilotErrorDiag": "",
[2025-11-27 16:30:27]  *** Listing of results directory ***
[2025-11-27 16:30:27] total 1723116
[2025-11-27 16:30:27] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-27 16:30:27] -rwx------. 1 boincer umatlas     36292 Nov 24 12:31 runpilot2-wrapper.sh
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:31 queuedata.json
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:30:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 16:30:27] -rw-r--r--. 3 boincer umatlas 410877152 Nov 26 00:04 EVNT.47483658._004237.pool.root.1
[2025-11-27 16:30:27] -rw-r--r--. 3 boincer umatlas 410877152 Nov 26 00:04 ATLAS.root_0
[2025-11-27 16:30:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 16:30:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 16:30:27] -rw-r--r--. 2 boincer umatlas    590091 Nov 26 00:04 input.tar.gz
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas      2776 Nov 26 14:10 pandaJob.out
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas        57 Nov 26 14:10 setup.sh.local
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas    991522 Nov 26 14:10 agis_schedconf.cvmfs.json
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas       534 Nov 27 16:15 boinc_task_state.xml
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas 912121448 Nov 27 16:28 HITS.47556185._000001.pool.root.1
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas      1070 Nov 27 16:29 memory_monitor_summary.json
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas        96 Nov 27 16:29 pilot_heartbeat.json
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas   2676629 Nov 27 16:29 log.47556185._000001.job.log.tgz.1
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas      8630 Nov 27 16:29 heartbeat.json
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 16:29 init_data.xml
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:30 boinc_mmap_file
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas        30 Nov 27 16:30 wrapper_checkpoint.txt
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas      4552 Nov 27 16:30 pilotlog.txt
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas  10658764 Nov 27 16:30 log.47556185._000001.job.log.1
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas       353 Nov 27 16:30 output.list
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:30 runtime_log
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas  13352960 Nov 27 16:30 result.tar.gz
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas      9440 Nov 27 16:30 runtime_log.err
[2025-11-27 16:30:27] -rw-------. 1 boincer umatlas       792 Nov 27 16:30 jPwMDmEaph8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm28IKDm6f3nPn.diag
[2025-11-27 16:30:27] -rw-r--r--. 1 boincer umatlas     23502 Nov 27 16:30 stderr.txt
[2025-11-27 16:30:28] HITS file was successfully produced:
[2025-11-27 16:30:28] -rw-------. 1 boincer umatlas 912121448 Nov 27 16:28 shared/HITS.pool.root.1
[2025-11-27 16:30:28]  *** Contents of shared directory: ***
[2025-11-27 16:30:28] total 1305636
[2025-11-27 16:30:28] -rw-r--r--. 3 boincer umatlas 410877152 Nov 26 00:04 ATLAS.root_0
[2025-11-27 16:30:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 16:30:28] -rw-r--r--. 2 boincer umatlas    590091 Nov 26 00:04 input.tar.gz
[2025-11-27 16:30:28] -rw-------. 1 boincer umatlas 912121448 Nov 27 16:28 HITS.pool.root.1
[2025-11-27 16:30:28] -rw-------. 1 boincer umatlas  13352960 Nov 27 16:30 result.tar.gz
16:30:29 (629818): run_atlas exited; CPU time 275923.928582
16:30:29 (629818): called boinc_finish(0)

</stderr_txt>
]]>

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