Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:05 (3022462): wrapper (7.7.26015): starting
00:15:05 (3022462): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:15:05] Arguments: --nthreads 8
[2025-11-26 00:15:05] Threads: 8
[2025-11-26 00:15:05] Checking for CVMFS
[2025-11-26 00:15:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:15:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:15:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:15:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:15:07] 2.13.2.0 34200 33282 262432 153310 3 84 34397550 40960001 11196 16776704 0 30239922 99.674 22009923 32011 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:15:07] CVMFS is ok
[2025-11-26 00:15:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:15:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:15:07] Further information can be found at the LHC@home message board.
[2025-11-26 00:15:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:15:07] Checking for apptainer binary...
[2025-11-26 00:15:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:15:07] Running /usr/bin/apptainer --version
[2025-11-26 00:15:08] apptainer version 1.4.4-1.el9
[2025-11-26 00:15:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:15:08] c-211-13.aglt2.org
[2025-11-26 00:15:08] apptainer works
[2025-11-26 00:15:08] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:15:08] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:15:09] Starting ATLAS job with PandaID=6895386422
[2025-11-26 00:15:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:03 (3022462): BOINC client no longer exists - exiting
00:20:03 (3022462): timer handler: client dead, exiting
00:28:35 (3067730): wrapper (7.7.26015): starting
00:28:35 (3067730): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:28:35] Arguments: --nthreads 8
[2025-11-26 00:28:35] Threads: 8
[2025-11-26 00:28:35] This job has been restarted, cleaning up previous attempt
[2025-11-26 00:28:35] Checking for CVMFS
[2025-11-26 00:28:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:28:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:28:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:28:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:28:35] 2.13.2.0 34200 33295 261316 153311 1 172 34418788 40960001 5977 16776704 0 30325634 99.675 22011218 32011 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:28:35] CVMFS is ok
[2025-11-26 00:28:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:28:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:28:35] Further information can be found at the LHC@home message board.
[2025-11-26 00:28:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:28:35] Checking for apptainer binary...
[2025-11-26 00:28:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:28:35] Running /usr/bin/apptainer --version
[2025-11-26 00:28:35] apptainer version 1.4.4-1.el9
[2025-11-26 00:28:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:28:35] c-211-13.aglt2.org
[2025-11-26 00:28:35] apptainer works
[2025-11-26 00:28:35] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:28:35] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:28:35] Starting ATLAS job with PandaID=6895386422
[2025-11-26 00:28:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:02:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:02:29] 2025-11-27 14:01:34,650 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2675.4427499999993
[2025-11-27 09:02:29] 2025-11-27 14:01:34,651 | INFO     | time since job start (117168s) is within the limit (172800.0s)
[2025-11-27 09:02:29] 2025-11-27 14:01:34,666 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895386422/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:02:29] 2025-11-27 14:01:34,667 | INFO     | extracted standard info from prmon json
[2025-11-27 09:02:29] 2025-11-27 14:01:34,667 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:02:29] 2025-11-27 14:01:34,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:02:29] 2025-11-27 14:01:35,021 | INFO     | monitor loop #6977: job 0:6895386422 is in state 'finished'
[2025-11-27 09:02:29] 2025-11-27 14:01:35,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:02:29] 2025-11-27 14:01:35,073 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:02:29] 2025-11-27 14:01:35,077 | INFO     | sum of square deviations: 2194392916151.6594
[2025-11-27 09:02:29] 2025-11-27 14:01:35,317 | INFO     | sum of deviations: 7170758161519.807
[2025-11-27 09:02:29] 2025-11-27 14:01:35,317 | INFO     | mean x: 1764193489.465104
[2025-11-27 09:02:29] 2025-11-27 14:01:35,317 | INFO     | mean y: 2960748.13125
[2025-11-27 09:02:29] 2025-11-27 14:01:35,317 | INFO     | intersect: -5762007216.342296
[2025-11-27 09:02:29] 2025-11-27 14:01:35,320 | INFO     | chi2: 11.86065660813761
[2025-11-27 09:02:29] 2025-11-27 14:01:35,336 | INFO     | sum of square deviations: 2177295241463.4648
[2025-11-27 09:02:29] 2025-11-27 14:01:35,679 | INFO     | sum of deviations: 7813299602556.452
[2025-11-27 09:02:29] 2025-11-27 14:01:35,679 | INFO     | mean x: 1764193336.9832897
[2025-11-27 09:02:29] 2025-11-27 14:01:35,679 | INFO     | mean y: 2966479.0454308093
[2025-11-27 09:02:29] 2025-11-27 14:01:35,679 | INFO     | intersect: -6327902590.148544
[2025-11-27 09:02:29] 2025-11-27 14:01:35,682 | INFO     | chi2: 8.858562637821688
[2025-11-27 09:02:29] 2025-11-27 14:01:35,682 | INFO     | current chi2=8.858562637821688 (change=25.311364029004785 %)
[2025-11-27 09:02:29] 2025-11-27 14:01:35,704 | INFO     | sum of square deviations: 2160286638211.4946
[2025-11-27 09:02:29] 2025-11-27 14:01:36,168 | INFO     | sum of deviations: 8490573002351.486
[2025-11-27 09:02:29] 2025-11-27 14:01:36,168 | INFO     | mean x: 1764193184.5015707
[2025-11-27 09:02:29] 2025-11-27 14:01:36,168 | INFO     | mean y: 2972549.512041885
[2025-11-27 09:02:29] 2025-11-27 14:01:36,168 | INFO     | intersect: -6930834639.918469
[2025-11-27 09:02:29] 2025-11-27 14:01:36,187 | INFO     | chi2: 5.455382857159851
[2025-11-27 09:02:29] 2025-11-27 14:01:36,187 | INFO     | current chi2=5.455382857159851 (change=38.41683938805083 %)
[2025-11-27 09:02:29] 2025-11-27 14:01:36,190 | INFO     | sum of square deviations: 2143366175457.4602
[2025-11-27 09:02:29] 2025-11-27 14:01:36,566 | INFO     | sum of deviations: 8843832334688.662
[2025-11-27 09:02:29] 2025-11-27 14:01:36,574 | INFO     | mean x: 1764193032.016798
[2025-11-27 09:02:29] 2025-11-27 14:01:36,574 | INFO     | mean y: 2975733.0419947505
[2025-11-27 09:02:29] 2025-11-27 14:01:36,575 | INFO     | intersect: -7276334521.9369955
[2025-11-27 09:02:29] 2025-11-27 14:01:36,577 | INFO     | chi2: 4.420432627507731
[2025-11-27 09:02:29] 2025-11-27 14:01:36,578 | INFO     | current chi2=4.420432627507731 (change=18.971175016503413 %)
[2025-11-27 09:02:29] 2025-11-27 14:01:36,578 | INFO     | right removable region: 1904
[2025-11-27 09:02:29] 2025-11-27 14:01:36,589 | INFO     | sum of square deviations: 2177287200822.433
[2025-11-27 09:02:29] 2025-11-27 14:01:36,664 | INFO     | time since job start (117170s) is within the limit (172800.0s)
[2025-11-27 09:02:29] 2025-11-27 14:01:36,936 | INFO     | sum of deviations: 6582093558222.148
[2025-11-27 09:02:29] 2025-11-27 14:01:36,936 | INFO     | mean x: 1764193641.9827676
[2025-11-27 09:02:29] 2025-11-27 14:01:36,936 | INFO     | mean y: 2965994.15613577
[2025-11-27 09:02:29] 2025-11-27 14:01:36,936 | INFO     | intersect: -5330316451.065137
[2025-11-27 09:02:29] 2025-11-27 14:01:36,951 | INFO     | chi2: 9.37355390748949
[2025-11-27 09:02:29] 2025-11-27 14:01:36,951 | INFO     | current chi2=9.37355390748949 (change=20.969350878447294 %)
[2025-11-27 09:02:29] 2025-11-27 14:01:36,952 | INFO     | left removable region: 10
[2025-11-27 09:02:29] 2025-11-27 14:01:36,954 | INFO     | sum of square deviations: 2106444196478.123
[2025-11-27 09:02:29] 2025-11-27 14:01:37,191 | INFO     | sum of deviations: 8120582330290.8125
[2025-11-27 09:02:29] 2025-11-27 14:01:37,192 | INFO     | mean x: 1764193306.5269272
[2025-11-27 09:02:29] 2025-11-27 14:01:37,192 | INFO     | mean y: 2983368.0823653643
[2025-11-27 09:02:29] 2025-11-27 14:01:37,192 | INFO     | intersect: -6798182794.378886
[2025-11-27 09:02:29] 2025-11-27 14:01:37,194 | INFO     | chi2: 1.6247495597904076
[2025-11-27 09:02:29] 2025-11-27 14:01:37,195 | INFO     | current memory leak: 3.86 B/s (using 1894 data points, chi2=1.62)
[2025-11-27 09:02:29] 2025-11-27 14:01:37,196 | INFO     | could have reported an average CPU frequency of 2663 MHz (67 samples)
[2025-11-27 09:02:29] 2025-11-27 14:01:37,196 | INFO     | ..............................
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . Timing measurements:
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . get job = 0 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . initial setup = 1 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . payload setup = 5 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . stage-in = 0 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . payload execution = 117114 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . stage-out = 10 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,197 | INFO     | . log creation = 4 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,198 | INFO     | ..............................
[2025-11-27 09:02:29] 2025-11-27 14:01:37,588 | INFO     | 
[2025-11-27 09:02:29] 2025-11-27 14:01:37,588 | INFO     | job summary report
[2025-11-27 09:02:29] 2025-11-27 14:01:37,588 | INFO     | --------------------------------------------------
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | PanDA job id: 6895386422
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | task id: 47556149
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | errors: (none)
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | pilot state: finished 
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | transexitcode: 0
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | exeerrorcode: 0
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | exeerrordiag: 
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | exitcode: 0
[2025-11-27 09:02:29] 2025-11-27 14:01:37,589 | INFO     | exitmsg: OK
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | cpuconsumptiontime: 346587 s
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | nevents: 1000
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | neventsw: 0
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | pid: 3118730
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | pgrp: 3118730
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | corecount: 8
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | event service: False
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | sizes: {0: 2283487, 1: 2284343, 5: 2284605, 12: 2284661, 117124: 2364331, 117137: 2373509, 117155: 2373699}
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | --------------------------------------------------
[2025-11-27 09:02:29] 2025-11-27 14:01:37,590 | INFO     | 
[2025-11-27 09:02:29] 2025-11-27 14:01:37,591 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 09:02:29] 2025-11-27 14:01:37,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,692 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,692 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,692 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,702 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,702 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,703 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,703 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,703 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,703 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,703 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,708 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,708 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,708 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,709 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:02:29] 2025-11-27 14:01:37,709 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,709 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:02:29] 2025-11-27 14:01:37,709 | INFO     | job 6895386422 has completed (purged errors)
[2025-11-27 09:02:29] 2025-11-27 14:01:37,710 | INFO     | overall cleanup function is called
[2025-11-27 09:02:29] 2025-11-27 14:01:38,768 | INFO     | --- collectZombieJob: --- 10, [3118730]
[2025-11-27 09:02:29] 2025-11-27 14:01:38,768 | INFO     | zombie collector waiting for pid 3118730
[2025-11-27 09:02:29] 2025-11-27 14:01:38,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:02:29] 2025-11-27 14:01:38,769 | INFO     | collected zombie processes
[2025-11-27 09:02:29] 2025-11-27 14:01:38,769 | INFO     | will attempt to kill all subprocesses of pid=3118730
[2025-11-27 09:02:29] 2025-11-27 14:01:39,405 | INFO     | process IDs to be killed: [3118730] (in reverse order)
[2025-11-27 09:02:29] 2025-11-27 14:01:39,514 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:02:29] 2025-11-27 14:01:39,515 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:02:29] 2025-11-27 14:01:39,526 | INFO     | did not find any defunct processes belonging to 3118730
[2025-11-27 09:02:29] 2025-11-27 14:01:39,538 | INFO     | did not find any defunct processes belonging to 3118730
[2025-11-27 09:02:29] 2025-11-27 14:01:39,540 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:02:29] 2025-11-27 14:01:39,540 | INFO     | ready for new job
[2025-11-27 09:02:29] 2025-11-27 14:01:39,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:02:29] 2025-11-27 14:01:39,550 | INFO     | ***************************************
[2025-11-27 09:02:29] 2025-11-27 14:01:39,550 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:02:29] 2025-11-27 14:01:39,551 | INFO     | ***************************************
[2025-11-27 09:02:29] 2025-11-27 14:01:39,551 | INFO     | 
[2025-11-27 09:02:29] 2025-11-27 14:01:39,554 | INFO     | architecture information:
[2025-11-27 09:02:29] 2025-11-27 14:01:39,555 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:02:29] 2025-11-27 14:01:39,575 | INFO     | cat /etc/os-release:
[2025-11-27 09:02:29] NAME="CentOS Linux"
[2025-11-27 09:02:29] VERSION="7 (Core)"
[2025-11-27 09:02:29] ID="centos"
[2025-11-27 09:02:29] ID_LIKE="rhel fedora"
[2025-11-27 09:02:29] VERSION_ID="7"
[2025-11-27 09:02:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:02:29] ANSI_COLOR="0;31"
[2025-11-27 09:02:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:02:29] HOME_URL="https://www.centos.org/"
[2025-11-27 09:02:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:02:29] 
[2025-11-27 09:02:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:02:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:02:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:02:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:02:29] 
[2025-11-27 09:02:29] 2025-11-27 14:01:39,576 | INFO     | ***************************************
[2025-11-27 09:02:29] 2025-11-27 14:01:40,080 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 09:02:29] 2025-11-27 14:01:40,120 | INFO     | sufficient remaining disk space (56061067264 B)
[2025-11-27 09:02:29] 2025-11-27 14:01:40,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:02:29] 2025-11-27 14:01:40,121 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:02:29] 2025-11-27 14:01:40,121 | INFO     | update_server=False
[2025-11-27 09:02:29] 2025-11-27 14:01:40,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:02:29] 2025-11-27 14:01:40,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:02:29] 2025-11-27 14:01:40,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:02:29] 2025-11-27 14:01:40,151 | INFO     | all payload control threads have been joined
[2025-11-27 09:02:29] 2025-11-27 14:01:40,742 | INFO     | all data control threads have been joined
[2025-11-27 09:02:29] 2025-11-27 14:01:40,965 | INFO     | all job control threads have been joined
[2025-11-27 09:02:29] 2025-11-27 14:01:41,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:02:29] 2025-11-27 14:01:41,112 | INFO     | aborting loop
[2025-11-27 09:02:29] 2025-11-27 14:01:41,135 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:41,157 | INFO     | [payload] control thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:41,388 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:41,599 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:41,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:41,748 | INFO     | [data] control thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:41,970 | INFO     | [job] control thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:41,997 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:42,117 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:42,140 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:42,393 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:42,471 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:42,586 | INFO     | [job] validate thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:42,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:02:29] 2025-11-27 14:01:42,713 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:43,618 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:01:44,142 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:02:29] 2025-11-27 14:02:10,777 | INFO     | PID=3086206 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:02:29] 2025-11-27 14:02:10,777 | INFO     | .. there are 11 such processes running
[2025-11-27 09:02:29] 2025-11-27 14:02:10,777 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:02:29] 2025-11-27 14:02:10,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:02:29] 2025-11-27 14:02:10,779 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:02:29] 2025-11-27 14:02:22,941 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:02:29] 2025-11-27 14:02:22,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811563181888)>', '<ExcThread(monitor, started 139811201455872)>']
[2025-11-27 09:02:29] 2025-11-27 14:02:23,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:02:29] 2025-11-27 14:02:23,865 | INFO     | [monitor] control thread has ended
[2025-11-27 09:02:29] 2025-11-27 14:02:28,000 | INFO     | all workflow threads have been joined
[2025-11-27 09:02:29] 2025-11-27 14:02:28,001 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:02:29] 2025-11-27 14:02:28,001 | INFO     | traces error code: 0
[2025-11-27 09:02:29] 2025-11-27 14:02:28,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:02:29] 2025-11-27 14:02:28,851 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:02:29] 2025-11-27 14:02:28,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:02:29] 2025-11-27 14:02:28,859 [wrapper] pilotpid: 3086206
[2025-11-27 09:02:29] 2025-11-27 14:02:28,863 [wrapper] Pilot exit status: 0
[2025-11-27 09:02:29] 2025-11-27 14:02:28,881 [wrapper] pandaids: 6895386422 6895386422
[2025-11-27 09:02:29] 2025-11-27 14:02:28,945 [wrapper] cleanup supervisor_pilot 1990407 3086207
[2025-11-27 09:02:29] 2025-11-27 14:02:28,949 [wrapper] Test setup, not cleaning
[2025-11-27 09:02:29] 2025-11-27 14:02:28,952 [wrapper] apfmon messages muted
[2025-11-27 09:02:29] 2025-11-27 14:02:28,956 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:02:29] 2025-11-27 14:02:28,959 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:02:29]  *** Error codes and diagnostics ***
[2025-11-27 09:02:29]     "exeErrorCode": 0,
[2025-11-27 09:02:29]     "exeErrorDiag": "",
[2025-11-27 09:02:29]     "pilotErrorCode": 0,
[2025-11-27 09:02:29]     "pilotErrorDiag": "",
[2025-11-27 09:02:29]  *** Listing of results directory ***
[2025-11-27 09:02:29] total 1721996
[2025-11-27 09:02:29] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-27 09:02:29] -rwx------. 1 boincer umatlas     36292 Nov 24 00:18 runpilot2-wrapper.sh
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:02:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:15 run_atlas
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:15 job.xml
[2025-11-27 09:02:29] -rw-r--r--. 3 boincer umatlas 408941869 Nov 26 00:15 EVNT.47483658._001241.pool.root.1
[2025-11-27 09:02:29] -rw-r--r--. 3 boincer umatlas 408941869 Nov 26 00:15 ATLAS.root_0
[2025-11-27 09:02:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:15 shared
[2025-11-27 09:02:29] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:15 input.tar.gz
[2025-11-27 09:02:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:15 start_atlas.sh
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:15 boinc_lockfile
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:28 pandaJob.out
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas        57 Nov 26 00:28 setup.sh.local
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas    991877 Nov 26 00:28 agis_schedconf.cvmfs.json
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:32 boinc_task_state.xml
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas      6615 Nov 27 09:00 init_data.xml
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas 906464595 Nov 27 09:00 HITS.47556149._002275.pool.root.1
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas      1059 Nov 27 09:01 memory_monitor_summary.json
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas   2807464 Nov 27 09:01 log.47556149._002275.job.log.tgz.1
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas        96 Nov 27 09:01 pilot_heartbeat.json
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas      8619 Nov 27 09:01 heartbeat.json
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 09:02 boinc_mmap_file
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas        29 Nov 27 09:02 wrapper_checkpoint.txt
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas      4824 Nov 27 09:02 pilotlog.txt
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas  14714301 Nov 27 09:02 log.47556149._002275.job.log.1
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas       353 Nov 27 09:02 output.list
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:02 runtime_log
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas  17541120 Nov 27 09:02 result.tar.gz
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas      9429 Nov 27 09:02 runtime_log.err
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas       788 Nov 27 09:02 4pkNDml8dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhTLKDmex1hMn.diag
[2025-11-27 09:02:29] -rw-r--r--. 1 boincer umatlas     23627 Nov 27 09:02 stderr.txt
[2025-11-27 09:02:29] HITS file was successfully produced:
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas 906464595 Nov 27 09:00 shared/HITS.pool.root.1
[2025-11-27 09:02:29]  *** Contents of shared directory: ***
[2025-11-27 09:02:29] total 1302316
[2025-11-27 09:02:29] -rw-r--r--. 3 boincer umatlas 408941869 Nov 26 00:15 ATLAS.root_0
[2025-11-27 09:02:29] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:15 input.tar.gz
[2025-11-27 09:02:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:15 start_atlas.sh
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas 906464595 Nov 27 09:00 HITS.pool.root.1
[2025-11-27 09:02:29] -rw-------. 1 boincer umatlas  17541120 Nov 27 09:02 result.tar.gz
09:02:31 (3067730): run_atlas exited; CPU time 349483.612106
09:02:31 (3067730): called boinc_finish(0)

</stderr_txt>
]]>

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