Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:42 (1658846): wrapper (7.7.26015): starting
00:12:42 (1658846): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:12:42] Arguments: --nthreads 9
[2025-11-25 00:12:42] Threads: 9
[2025-11-25 00:12:42] Checking for CVMFS
[2025-11-25 00:12:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:12:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:12:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:12:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:12:47] 2.13.2.0 8058 33963 286540 153271 2 85 23463896 40960001 13612 16776704 0 35112321 99.721 24070835 35432 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:12:47] CVMFS is ok
[2025-11-25 00:12:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:12:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:12:47] Further information can be found at the LHC@home message board.
[2025-11-25 00:12:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:12:47] Checking for apptainer binary...
[2025-11-25 00:12:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:12:47] Running /usr/bin/apptainer --version
[2025-11-25 00:12:47] apptainer version 1.4.4-1.el9
[2025-11-25 00:12:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:12:49] c-210-33-3.aglt2.org
[2025-11-25 00:12:49] apptainer works
[2025-11-25 00:12:49] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:12:49] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:12:49] Starting ATLAS job with PandaID=6895386423
[2025-11-25 00:12:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:46:34]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:46:34] 2025-11-26 18:45:39,369 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 13:46:34] 2025-11-26 18:45:39,612 | INFO     | monitor loop #7880: job 0:6895386423 is in state 'finished'
[2025-11-26 13:46:34] 2025-11-26 18:45:39,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:46:34] 2025-11-26 18:45:40,298 | INFO     | time since job start (135083s) is within the limit (172800.0s)
[2025-11-26 13:46:34] 2025-11-26 18:45:42,117 | INFO     | monitor loop #7881: job 0:6895386423 is in state 'finished'
[2025-11-26 13:46:34] 2025-11-26 18:45:42,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:46:34] 2025-11-26 18:45:42,308 | INFO     | time since job start (135085s) is within the limit (172800.0s)
[2025-11-26 13:46:34] 2025-11-26 18:45:44,317 | INFO     | time since job start (135087s) is within the limit (172800.0s)
[2025-11-26 13:46:34] 2025-11-26 18:45:44,622 | INFO     | monitor loop #7882: job 0:6895386423 is in state 'finished'
[2025-11-26 13:46:34] 2025-11-26 18:45:44,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:46:34] 2025-11-26 18:45:46,324 | INFO     | time since job start (135089s) is within the limit (172800.0s)
[2025-11-26 13:46:34] 2025-11-26 18:45:47,135 | INFO     | monitor loop #7883: job 0:6895386423 is in state 'finished'
[2025-11-26 13:46:34] 2025-11-26 18:45:47,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:46:34] 2025-11-26 18:45:48,335 | INFO     | time since job start (135091s) is within the limit (172800.0s)
[2025-11-26 13:46:34] 2025-11-26 18:45:49,384 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 13:46:34] 2025-11-26 18:45:49,392 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2610.177714285714
[2025-11-26 13:46:34] 2025-11-26 18:45:49,405 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895386423/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:46:34] 2025-11-26 18:45:49,405 | INFO     | extracted standard info from prmon json
[2025-11-26 13:46:34] 2025-11-26 18:45:49,406 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:46:34] 2025-11-26 18:45:49,406 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:46:34] 2025-11-26 18:45:49,436 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:46:34] 2025-11-26 18:45:49,438 | INFO     | sum of square deviations: 3356008485420.176
[2025-11-26 13:46:34] 2025-11-26 18:45:49,515 | INFO     | sum of deviations: 18848648947455.027
[2025-11-26 13:46:34] 2025-11-26 18:45:49,515 | INFO     | mean x: 1764115277.9642856
[2025-11-26 13:46:34] 2025-11-26 18:45:49,515 | INFO     | mean y: 3001823.6464737793
[2025-11-26 13:46:34] 2025-11-26 18:45:49,515 | INFO     | intersect: -9904955716.284412
[2025-11-26 13:46:34] 2025-11-26 18:45:49,518 | INFO     | chi2: 21.614758465339246
[2025-11-26 13:46:34] 2025-11-26 18:45:49,520 | INFO     | sum of square deviations: 3333305271640.543
[2025-11-26 13:46:34] 2025-11-26 18:45:49,594 | INFO     | sum of deviations: 19624833306501.36
[2025-11-26 13:46:34] 2025-11-26 18:45:49,597 | INFO     | mean x: 1764115125.4766653
[2025-11-26 13:46:34] 2025-11-26 18:45:49,597 | INFO     | mean y: 3007036.686905301
[2025-11-26 13:46:34] 2025-11-26 18:45:49,597 | INFO     | intersect: -10383219981.13383
[2025-11-26 13:46:34] 2025-11-26 18:45:49,599 | INFO     | chi2: 18.44542808123832
[2025-11-26 13:46:34] 2025-11-26 18:45:49,600 | INFO     | current chi2=18.44542808123832 (change=14.662807309103949 %)
[2025-11-26 13:46:34] 2025-11-26 18:45:49,600 | INFO     | right removable region: 2206
[2025-11-26 13:46:34] 2025-11-26 18:45:49,602 | INFO     | sum of square deviations: 3333297898570.5513
[2025-11-26 13:46:34] 2025-11-26 18:45:49,672 | INFO     | monitor loop #7884: job 0:6895386423 is in state 'finished'
[2025-11-26 13:46:34] 2025-11-26 18:45:49,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,032 | INFO     | sum of deviations: 17879415928205.39
[2025-11-26 13:46:34] 2025-11-26 18:45:50,032 | INFO     | mean x: 1764115430.4766653
[2025-11-26 13:46:34] 2025-11-26 18:45:50,032 | INFO     | mean y: 3008332.182147712
[2025-11-26 13:46:34] 2025-11-26 18:45:50,033 | INFO     | intersect: -9459498316.378597
[2025-11-26 13:46:34] 2025-11-26 18:45:50,041 | INFO     | chi2: 16.964618551956
[2025-11-26 13:46:34] 2025-11-26 18:45:50,041 | INFO     | current chi2=16.964618551956 (change=21.513726007348478 %)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,042 | INFO     | left removable region: 10
[2025-11-26 13:46:34] 2025-11-26 18:45:50,044 | INFO     | sum of square deviations: 3283704601117.9688
[2025-11-26 13:46:34] 2025-11-26 18:45:50,363 | INFO     | sum of deviations: 17999404131942.426
[2025-11-26 13:46:34] 2025-11-26 18:45:50,368 | INFO     | mean x: 1764115400.003643
[2025-11-26 13:46:34] 2025-11-26 18:45:50,368 | INFO     | mean y: 3020458.699453552
[2025-11-26 13:46:34] 2025-11-26 18:45:50,368 | INFO     | intersect: -9666858497.29379
[2025-11-26 13:46:34] 2025-11-26 18:45:50,370 | INFO     | chi2: 9.659042980887413
[2025-11-26 13:46:34] 2025-11-26 18:45:50,371 | INFO     | current memory leak: 5.48 B/s (using 2196 data points, chi2=9.66)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,382 | INFO     | could have reported an average CPU frequency of 2761 MHz (77 samples)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,363 | INFO     | time since job start (135093s) is within the limit (172800.0s)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,382 | INFO     | ..............................
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . Timing measurements:
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . get job = 2 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . initial setup = 10 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . payload setup = 54 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . stage-in = 0 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . payload execution = 134928 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . stage-out = 6 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | . log creation = 1 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,387 | INFO     | ..............................
[2025-11-26 13:46:34] 2025-11-26 18:45:50,853 | INFO     | 
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | job summary report
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | --------------------------------------------------
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | PanDA job id: 6895386423
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | task id: 47556149
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | errors: (none)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | pilot state: finished 
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | transexitcode: 0
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | exeerrorcode: 0
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | exeerrordiag: 
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | exitcode: 0
[2025-11-26 13:46:34] 2025-11-26 18:45:50,854 | INFO     | exitmsg: OK
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | cpuconsumptiontime: 257008 s
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | nevents: 1000
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | neventsw: 0
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | pid: 1676179
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | pgrp: 1676179
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | corecount: 9
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | event service: False
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | sizes: {0: 2284083, 1: 2284139, 2: 2284167, 3: 2284394, 14: 2284394, 25: 2284422, 36: 2284578, 42: 2284868, 48: 2284924, 134987: 2372459, 134994: 2381794, 135007: 
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | --------------------------------------------------
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | 
[2025-11-26 13:46:34] 2025-11-26 18:45:50,855 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 13:46:34] 2025-11-26 18:45:50,917 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,917 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,918 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:46:34] 2025-11-26 18:45:50,920 | INFO     | job 6895386423 has completed (purged errors)
[2025-11-26 13:46:34] 2025-11-26 18:45:50,920 | INFO     | overall cleanup function is called
[2025-11-26 13:46:34] 2025-11-26 18:45:51,969 | INFO     | --- collectZombieJob: --- 10, [1676179]
[2025-11-26 13:46:34] 2025-11-26 18:45:51,970 | INFO     | zombie collector waiting for pid 1676179
[2025-11-26 13:46:34] 2025-11-26 18:45:51,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:46:34] 2025-11-26 18:45:51,989 | INFO     | collected zombie processes
[2025-11-26 13:46:34] 2025-11-26 18:45:51,989 | INFO     | will attempt to kill all subprocesses of pid=1676179
[2025-11-26 13:46:34] 2025-11-26 18:45:52,787 | INFO     | process IDs to be killed: [1676179] (in reverse order)
[2025-11-26 13:46:34] 2025-11-26 18:45:52,929 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:46:34] 2025-11-26 18:45:52,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:46:34] 2025-11-26 18:45:53,003 | INFO     | did not find any defunct processes belonging to 1676179
[2025-11-26 13:46:34] 2025-11-26 18:45:53,038 | INFO     | did not find any defunct processes belonging to 1676179
[2025-11-26 13:46:34] 2025-11-26 18:45:53,048 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:46:34] 2025-11-26 18:45:53,048 | INFO     | ready for new job
[2025-11-26 13:46:34] 2025-11-26 18:45:53,048 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:46:34] 2025-11-26 18:45:53,070 | INFO     | ***************************************
[2025-11-26 13:46:34] 2025-11-26 18:45:53,071 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:46:34] 2025-11-26 18:45:53,071 | INFO     | ***************************************
[2025-11-26 13:46:34] 2025-11-26 18:45:53,071 | INFO     | 
[2025-11-26 13:46:34] 2025-11-26 18:45:53,083 | INFO     | architecture information:
[2025-11-26 13:46:34] 2025-11-26 18:45:53,088 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:46:34] 2025-11-26 18:45:53,143 | INFO     | cat /etc/os-release:
[2025-11-26 13:46:34] NAME="CentOS Linux"
[2025-11-26 13:46:34] VERSION="7 (Core)"
[2025-11-26 13:46:34] ID="centos"
[2025-11-26 13:46:34] ID_LIKE="rhel fedora"
[2025-11-26 13:46:34] VERSION_ID="7"
[2025-11-26 13:46:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:46:34] ANSI_COLOR="0;31"
[2025-11-26 13:46:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:46:34] HOME_URL="https://www.centos.org/"
[2025-11-26 13:46:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:46:34] 
[2025-11-26 13:46:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:46:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:46:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:46:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:46:34] 
[2025-11-26 13:46:34] 2025-11-26 18:45:53,144 | INFO     | ***************************************
[2025-11-26 13:46:34] 2025-11-26 18:45:53,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 13:46:34] 2025-11-26 18:45:53,731 | INFO     | sufficient remaining disk space (71693238272 B)
[2025-11-26 13:46:34] 2025-11-26 18:45:53,731 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:46:34] 2025-11-26 18:45:53,739 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:46:34] 2025-11-26 18:45:53,740 | INFO     | update_server=False
[2025-11-26 13:46:34] 2025-11-26 18:45:53,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:46:34] 2025-11-26 18:45:53,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:46:34] 2025-11-26 18:45:53,742 | INFO     | aborting loop
[2025-11-26 13:46:34] 2025-11-26 18:45:54,462 | INFO     | all job control threads have been joined
[2025-11-26 13:46:34] 2025-11-26 18:45:54,569 | INFO     | all data control threads have been joined
[2025-11-26 13:46:34] 2025-11-26 18:45:54,584 | INFO     | all payload control threads have been joined
[2025-11-26 13:46:34] 2025-11-26 18:45:54,746 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:54,765 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:54,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,025 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,025 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:46:34] 2025-11-26 18:45:55,125 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,385 | INFO     | [job] validate thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,468 | INFO     | [job] control thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,584 | INFO     | [data] control thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,632 | INFO     | [payload] control thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:46:34] 2025-11-26 18:45:55,658 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,666 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:55,841 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:56,647 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:45:56,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:46:34] 2025-11-26 18:45:57,145 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:46:00,832 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:46:34] 2025-11-26 18:46:24,472 | INFO     | PID=1665600 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:46:34] 2025-11-26 18:46:24,473 | INFO     | .. there are 10 such processes running
[2025-11-26 13:46:34] 2025-11-26 18:46:24,473 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:46:34] 2025-11-26 18:46:24,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:46:34] 2025-11-26 18:46:24,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:46:34] 2025-11-26 18:46:26,923 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:46:34] 2025-11-26 18:46:27,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140055498925888)>', '<ExcThread(monitor, started 140055142176512)>']
[2025-11-26 13:46:34] 2025-11-26 18:46:28,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:46:34] 2025-11-26 18:46:28,510 | INFO     | [monitor] control thread has ended
[2025-11-26 13:46:34] 2025-11-26 18:46:32,779 | INFO     | all workflow threads have been joined
[2025-11-26 13:46:34] 2025-11-26 18:46:32,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:46:34] 2025-11-26 18:46:32,780 | INFO     | traces error code: 0
[2025-11-26 13:46:34] 2025-11-26 18:46:32,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:46:34] 2025-11-26 18:46:33,381 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:46:34] 2025-11-26 18:46:33,388 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:46:34] 2025-11-26 18:46:33,398 [wrapper] pilotpid: 1665600
[2025-11-26 13:46:34] 2025-11-26 18:46:33,468 [wrapper] Pilot exit status: 0
[2025-11-26 13:46:34] 2025-11-26 18:46:33,566 [wrapper] pandaids: 6895386423
[2025-11-26 13:46:34] 2025-11-26 18:46:33,618 [wrapper] cleanup supervisor_pilot  779240 1665601
[2025-11-26 13:46:34] 2025-11-26 18:46:33,621 [wrapper] Test setup, not cleaning
[2025-11-26 13:46:34] 2025-11-26 18:46:33,625 [wrapper] apfmon messages muted
[2025-11-26 13:46:34] 2025-11-26 18:46:33,628 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:46:34] 2025-11-26 18:46:33,631 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:46:34]  *** Error codes and diagnostics ***
[2025-11-26 13:46:34]     "exeErrorCode": 0,
[2025-11-26 13:46:34]     "exeErrorDiag": "",
[2025-11-26 13:46:34]     "pilotErrorCode": 0,
[2025-11-26 13:46:34]     "pilotErrorDiag": "",
[2025-11-26 13:46:34]  *** Listing of results directory ***
[2025-11-26 13:46:34] total 1332484
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-26 13:46:34] -rwx------. 1 boincer umatlas     36292 Nov 24 00:18 runpilot2-wrapper.sh
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:46:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:12 run_atlas
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:12 job.xml
[2025-11-26 13:46:34] -rw-r--r--. 2 boincer umatlas 408941869 Nov 25 00:12 EVNT.47483658._001241.pool.root.1
[2025-11-26 13:46:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:12 start_atlas.sh
[2025-11-26 13:46:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:12 shared
[2025-11-26 13:46:34] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 00:12 input.tar.gz
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:12 boinc_lockfile
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:12 pandaJob.out
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas        57 Nov 25 00:12 setup.sh.local
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas    991801 Nov 25 00:14 agis_schedconf.cvmfs.json
[2025-11-26 13:46:34] drwx------. 5 boincer umatlas      4096 Nov 25 00:14 pilot3
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas       533 Nov 26 13:31 boinc_task_state.xml
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 13:40 init_data.xml
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas 911656698 Nov 26 13:44 HITS.47556149._002276.pool.root.1
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas      1071 Nov 26 13:45 memory_monitor_summary.json
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas   1516240 Nov 26 13:45 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas   3127059 Nov 26 13:45 log.47556149._002276.job.log.tgz.1
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas        95 Nov 26 13:45 pilot_heartbeat.json
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas      8670 Nov 26 13:45 heartbeat.json
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas      4824 Nov 26 13:46 pilotlog.txt
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas  16845540 Nov 26 13:46 log.47556149._002276.job.log.1
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas       353 Nov 26 13:46 output.list
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:46 boinc_mmap_file
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:46 runtime_log
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas  19988480 Nov 26 13:46 result.tar.gz
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:46 wrapper_checkpoint.txt
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas       670 Nov 26 13:46 UvlNDml8dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiTLKDmElebmm.diag
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 13:46 runtime_log.err
[2025-11-26 13:46:34] -rw-r--r--. 1 boincer umatlas     21918 Nov 26 13:46 stderr.txt
[2025-11-26 13:46:34] HITS file was successfully produced:
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas 911656698 Nov 26 13:44 shared/HITS.pool.root.1
[2025-11-26 13:46:34]  *** Contents of shared directory: ***
[2025-11-26 13:46:34] total 1309776
[2025-11-26 13:46:34] -rw-r--r--. 2 boincer umatlas 408941869 Nov 25 00:12 ATLAS.root_0
[2025-11-26 13:46:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:12 start_atlas.sh
[2025-11-26 13:46:34] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 00:12 input.tar.gz
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas 911656698 Nov 26 13:44 HITS.pool.root.1
[2025-11-26 13:46:34] -rw-------. 1 boincer umatlas  19988480 Nov 26 13:46 result.tar.gz
13:46:36 (1658846): run_atlas exited; CPU time 258844.350458
13:46:36 (1658846): called boinc_finish(0)

</stderr_txt>
]]>

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