Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:11 (129636): wrapper (7.7.26015): starting
00:05:11 (129636): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:05:11] Arguments: --nthreads 9
[2025-11-25 00:05:11] Threads: 9
[2025-11-25 00:05:11] Checking for CVMFS
[2025-11-25 00:05:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:13] 2.13.2.0 9514 33845 470728 153270 2 622 38518693 40960000 24291 16776704 0 89022699 99.572 94995395 35931 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:05:13] CVMFS is ok
[2025-11-25 00:05:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:13] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:13] Checking for apptainer binary...
[2025-11-25 00:05:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:13] Running /usr/bin/apptainer --version
[2025-11-25 00:05:13] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:13] c-211-33-3.aglt2.org
[2025-11-25 00:05:13] apptainer works
[2025-11-25 00:05:13] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:05:13] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:05:13] Starting ATLAS job with PandaID=6895385462
[2025-11-25 00:05:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:47:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:47:45] 2025-11-27 01:46:29,202 | INFO     | monitor loop #9163: job 0:6895385462 is in state 'finished'
[2025-11-26 20:47:45] 2025-11-27 01:46:29,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:45] 2025-11-27 01:46:30,318 | INFO     | PID=144096 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:47:45] 2025-11-27 01:46:30,318 | INFO     | .. there are 24 such processes running
[2025-11-26 20:47:45] 2025-11-27 01:46:31,319 | INFO     | time since job start (160846s) is within the limit (172800.0s)
[2025-11-26 20:47:45] 2025-11-27 01:46:31,719 | INFO     | monitor loop #9164: job 0:6895385462 is in state 'finished'
[2025-11-26 20:47:45] 2025-11-27 01:46:31,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:45] 2025-11-27 01:46:33,326 | INFO     | time since job start (160848s) is within the limit (172800.0s)
[2025-11-26 20:47:45] 2025-11-27 01:46:34,224 | INFO     | monitor loop #9165: job 0:6895385462 is in state 'finished'
[2025-11-26 20:47:45] 2025-11-27 01:46:34,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:45] 2025-11-27 01:46:35,333 | INFO     | time since job start (160850s) is within the limit (172800.0s)
[2025-11-26 20:47:45] 2025-11-27 01:46:35,704 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:47:45] 2025-11-27 01:46:35,783 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2658.4994375000006
[2025-11-26 20:47:45] 2025-11-27 01:46:35,930 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6895385462/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:47:45] 2025-11-27 01:46:35,931 | INFO     | extracted standard info from prmon json
[2025-11-26 20:47:45] 2025-11-27 01:46:35,931 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:47:45] 2025-11-27 01:46:35,931 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:47:45] 2025-11-27 01:46:36,298 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:47:45] 2025-11-27 01:46:36,380 | INFO     | sum of square deviations: 5672875811597.642
[2025-11-26 20:47:45] 2025-11-27 01:46:36,783 | INFO     | monitor loop #9166: job 0:6895385462 is in state 'finished'
[2025-11-26 20:47:45] 2025-11-27 01:46:36,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:45] 2025-11-27 01:46:37,387 | INFO     | time since job start (160852s) is within the limit (172800.0s)
[2025-11-26 20:47:45] 2025-11-27 01:46:37,443 | INFO     | sum of deviations: 17464785477962.572
[2025-11-26 20:47:45] 2025-11-27 01:46:37,444 | INFO     | mean x: 1764127569.8702087
[2025-11-26 20:47:45] 2025-11-27 01:46:37,444 | INFO     | mean y: 3090099.244402277
[2025-11-26 20:47:45] 2025-11-27 01:46:37,444 | INFO     | intersect: -5428037002.208156
[2025-11-26 20:47:45] 2025-11-27 01:46:37,461 | INFO     | chi2: 20.653887189491464
[2025-11-26 20:47:45] 2025-11-27 01:46:37,488 | INFO     | sum of square deviations: 5640644685998.84
[2025-11-26 20:47:45] 2025-11-27 01:46:38,479 | INFO     | sum of deviations: 18416670837800.31
[2025-11-26 20:47:45] 2025-11-27 01:46:38,479 | INFO     | mean x: 1764127417.3756654
[2025-11-26 20:47:45] 2025-11-27 01:46:38,480 | INFO     | mean y: 3094602.572623574
[2025-11-26 20:47:45] 2025-11-27 01:46:38,480 | INFO     | intersect: -5756770762.177471
[2025-11-26 20:47:45] 2025-11-27 01:46:38,503 | INFO     | chi2: 17.353881852903328
[2025-11-26 20:47:45] 2025-11-27 01:46:38,505 | INFO     | current chi2=17.353881852903328 (change=15.97764772467215 %)
[2025-11-26 20:47:45] 2025-11-27 01:46:38,505 | INFO     | right removable region: 2629
[2025-11-26 20:47:45] 2025-11-27 01:46:38,549 | INFO     | sum of square deviations: 5640640072568.84
[2025-11-26 20:47:45] 2025-11-27 01:46:39,329 | INFO     | monitor loop #9167: job 0:6895385462 is in state 'finished'
[2025-11-26 20:47:45] 2025-11-27 01:46:39,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:45] 2025-11-27 01:46:39,454 | INFO     | time since job start (160854s) is within the limit (172800.0s)
[2025-11-26 20:47:45] 2025-11-27 01:46:39,543 | INFO     | sum of deviations: 16538301290708.895
[2025-11-26 20:47:45] 2025-11-27 01:46:39,544 | INFO     | mean x: 1764127722.3756654
[2025-11-26 20:47:45] 2025-11-27 01:46:39,544 | INFO     | mean y: 3094481.3988593156
[2025-11-26 20:47:45] 2025-11-27 01:46:39,544 | INFO     | intersect: -5169310673.439133
[2025-11-26 20:47:45] 2025-11-27 01:46:39,567 | INFO     | chi2: 17.962541549623655
[2025-11-26 20:47:45] 2025-11-27 01:46:39,568 | INFO     | current chi2=17.962541549623655 (change=13.030697878688638 %)
[2025-11-26 20:47:45] 2025-11-27 01:46:39,568 | INFO     | left removable region: 10
[2025-11-26 20:47:45] 2025-11-27 01:46:39,605 | INFO     | sum of square deviations: 5570158369480.399
[2025-11-26 20:47:45] 2025-11-27 01:46:40,627 | INFO     | sum of deviations: 17377857502310.355
[2025-11-26 20:47:45] 2025-11-27 01:46:40,628 | INFO     | mean x: 1764127691.8850706
[2025-11-26 20:47:45] 2025-11-27 01:46:40,628 | INFO     | mean y: 3101283.612447499
[2025-11-26 20:47:45] 2025-11-27 01:46:40,628 | INFO     | intersect: -5500648809.639959
[2025-11-26 20:47:45] 2025-11-27 01:46:40,655 | INFO     | chi2: 13.913407414168237
[2025-11-26 20:47:45] 2025-11-27 01:46:40,656 | INFO     | current memory leak: 3.12 B/s (using 2619 data points, chi2=13.91)
[2025-11-26 20:47:45] 2025-11-27 01:46:40,663 | INFO     | could have reported an average CPU frequency of 2652 MHz (91 samples)
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | ..............................
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . Timing measurements:
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . get job = 0 s
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . initial setup = 3 s
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . payload setup = 24 s
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . stage-in = 0 s
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . payload execution = 160731 s
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . stage-out = 15 s
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | . log creation = 7 s
[2025-11-26 20:47:45] 2025-11-27 01:46:40,664 | INFO     | ..............................
[2025-11-26 20:47:45] 2025-11-27 01:46:41,220 | INFO     | 
[2025-11-26 20:47:45] 2025-11-27 01:46:41,220 | INFO     | job summary report
[2025-11-26 20:47:45] 2025-11-27 01:46:41,220 | INFO     | --------------------------------------------------
[2025-11-26 20:47:45] 2025-11-27 01:46:41,220 | INFO     | PanDA job id: 6895385462
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | task id: 47556149
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | errors: (none)
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | pilot state: finished 
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | transexitcode: 0
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | exeerrorcode: 0
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | exeerrordiag: 
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | exitcode: 0
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | exitmsg: OK
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | cpuconsumptiontime: 260817 s
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | nevents: 1000
[2025-11-26 20:47:45] 2025-11-27 01:46:41,227 | INFO     | neventsw: 0
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | pid: 178682
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | pgrp: 178682
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | corecount: 9
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | event service: False
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | sizes: {0: 2284139, 1: 2284167, 2: 2284338, 12: 2284366, 17: 2284656, 23: 2284684, 160759: 2382504, 160760: 2382503, 160777: 2391558, 160779: 2391614, 160815: 2391
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | --------------------------------------------------
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | 
[2025-11-26 20:47:45] 2025-11-27 01:46:41,228 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-26 20:47:45] 2025-11-27 01:46:41,386 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,386 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,386 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,386 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,386 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,386 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,386 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:47:45] 2025-11-27 01:46:41,388 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,388 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:47:45] 2025-11-27 01:46:41,388 | INFO     | job 6895385462 has completed (purged errors)
[2025-11-26 20:47:45] 2025-11-27 01:46:41,388 | INFO     | overall cleanup function is called
[2025-11-26 20:47:45] 2025-11-27 01:46:42,514 | INFO     | --- collectZombieJob: --- 10, [178682]
[2025-11-26 20:47:45] 2025-11-27 01:46:42,515 | INFO     | zombie collector waiting for pid 178682
[2025-11-26 20:47:45] 2025-11-27 01:46:42,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:47:45] 2025-11-27 01:46:42,515 | INFO     | collected zombie processes
[2025-11-26 20:47:45] 2025-11-27 01:46:42,515 | INFO     | will attempt to kill all subprocesses of pid=178682
[2025-11-26 20:47:45] 2025-11-27 01:46:44,092 | INFO     | process IDs to be killed: [178682] (in reverse order)
[2025-11-26 20:47:45] 2025-11-27 01:46:44,975 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:47:45] 2025-11-27 01:46:44,976 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:47:45] 2025-11-27 01:46:45,012 | INFO     | did not find any defunct processes belonging to 178682
[2025-11-26 20:47:45] 2025-11-27 01:46:45,028 | INFO     | did not find any defunct processes belonging to 178682
[2025-11-26 20:47:45] 2025-11-27 01:46:45,029 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:47:45] 2025-11-27 01:46:45,030 | INFO     | ready for new job
[2025-11-26 20:47:45] 2025-11-27 01:46:45,030 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:47:45] 2025-11-27 01:46:45,041 | INFO     | ***************************************
[2025-11-26 20:47:45] 2025-11-27 01:46:45,041 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:47:45] 2025-11-27 01:46:45,041 | INFO     | ***************************************
[2025-11-26 20:47:45] 2025-11-27 01:46:45,041 | INFO     | 
[2025-11-26 20:47:45] 2025-11-27 01:46:45,047 | INFO     | architecture information:
[2025-11-26 20:47:45] 2025-11-27 01:46:45,047 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:47:45] 2025-11-27 01:46:45,158 | INFO     | cat /etc/os-release:
[2025-11-26 20:47:45] NAME="CentOS Linux"
[2025-11-26 20:47:45] VERSION="7 (Core)"
[2025-11-26 20:47:45] ID="centos"
[2025-11-26 20:47:45] ID_LIKE="rhel fedora"
[2025-11-26 20:47:45] VERSION_ID="7"
[2025-11-26 20:47:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:47:45] ANSI_COLOR="0;31"
[2025-11-26 20:47:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:47:45] HOME_URL="https://www.centos.org/"
[2025-11-26 20:47:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:47:45] 
[2025-11-26 20:47:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:47:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:47:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:47:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:47:45] 
[2025-11-26 20:47:45] 2025-11-27 01:46:45,158 | INFO     | ***************************************
[2025-11-26 20:47:45] 2025-11-27 01:46:45,662 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-26 20:47:45] 2025-11-27 01:46:45,776 | INFO     | sufficient remaining disk space (119266082816 B)
[2025-11-26 20:47:45] 2025-11-27 01:46:45,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:47:45] 2025-11-27 01:46:45,776 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:47:45] 2025-11-27 01:46:45,777 | INFO     | update_server=False
[2025-11-26 20:47:45] 2025-11-27 01:46:45,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:47:45] 2025-11-27 01:46:45,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:47:45] 2025-11-27 01:46:45,777 | INFO     | aborting loop
[2025-11-26 20:47:45] 2025-11-27 01:46:45,788 | INFO     | all payload control threads have been joined
[2025-11-26 20:47:45] 2025-11-27 01:46:45,889 | INFO     | all data control threads have been joined
[2025-11-26 20:47:45] 2025-11-27 01:46:45,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:47:45] 2025-11-27 01:46:46,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:47:45] 2025-11-27 01:46:46,742 | INFO     | all job control threads have been joined
[2025-11-26 20:47:45] 2025-11-27 01:46:46,783 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:46,783 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:46,794 | INFO     | [payload] control thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:46,855 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:46,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:46,861 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:46,895 | INFO     | [data] control thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:47,224 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:47,429 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:47,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:47:45] 2025-11-27 01:46:47,658 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:47,659 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:47,748 | INFO     | [job] control thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:47,943 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:48,102 | INFO     | [job] validate thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:48,241 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:46:51,484 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:47:45] 2025-11-27 01:47:14,803 | INFO     | PID=144096 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:47:45] 2025-11-27 01:47:14,803 | INFO     | .. there are 24 such processes running
[2025-11-26 20:47:45] 2025-11-27 01:47:14,804 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:47:45] 2025-11-27 01:47:14,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:47:45] 2025-11-27 01:47:14,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:47:45] 2025-11-27 01:47:37,061 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:47:45] 2025-11-27 01:47:38,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992515598144)>', '<ExcThread(monitor, started 139992009520896)>']
[2025-11-26 20:47:45] 2025-11-27 01:47:38,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:47:45] 2025-11-27 01:47:38,948 | INFO     | [monitor] control thread has ended
[2025-11-26 20:47:45] 2025-11-27 01:47:43,845 | INFO     | all workflow threads have been joined
[2025-11-26 20:47:45] 2025-11-27 01:47:43,846 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:47:45] 2025-11-27 01:47:43,846 | INFO     | traces error code: 0
[2025-11-26 20:47:45] 2025-11-27 01:47:43,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:47:45] 2025-11-27 01:47:45,036 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:47:45] 2025-11-27 01:47:45,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:47:45] 2025-11-27 01:47:45,065 [wrapper] pilotpid: 144096
[2025-11-26 20:47:45] 2025-11-27 01:47:45,082 [wrapper] Pilot exit status: 0
[2025-11-26 20:47:45] 2025-11-27 01:47:45,140 [wrapper] pandaids: 6895385462
[2025-11-26 20:47:45] 2025-11-27 01:47:45,261 [wrapper] cleanup supervisor_pilot 3972552 144097
[2025-11-26 20:47:45] 2025-11-27 01:47:45,275 [wrapper] Test setup, not cleaning
[2025-11-26 20:47:45] 2025-11-27 01:47:45,287 [wrapper] apfmon messages muted
[2025-11-26 20:47:45] 2025-11-27 01:47:45,305 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:47:45] 2025-11-27 01:47:45,324 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:47:45]  *** Error codes and diagnostics ***
[2025-11-26 20:47:45]     "exeErrorCode": 0,
[2025-11-26 20:47:45]     "exeErrorDiag": "",
[2025-11-26 20:47:45]     "pilotErrorCode": 0,
[2025-11-26 20:47:45]     "pilotErrorDiag": "",
[2025-11-26 20:47:45]  *** Listing of results directory ***
[2025-11-26 20:47:45] total 1353408
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 20:47:45] -rwx------. 1 boincer umatlas     36292 Nov 24 00:17 runpilot2-wrapper.sh
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:47:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-26 20:47:45] -rw-r--r--. 2 boincer umatlas 408631289 Nov 25 00:05 EVNT.47483658._001239.pool.root.1
[2025-11-26 20:47:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 20:47:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-26 20:47:45] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:05 input.tar.gz
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:05 pandaJob.out
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas        57 Nov 25 00:05 setup.sh.local
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-26 20:47:45] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas       534 Nov 26 20:04 boinc_task_state.xml
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas      6881 Nov 26 20:39 init_data.xml
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas 927207948 Nov 26 20:44 HITS.47556149._002255.pool.root.1
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas      1074 Nov 26 20:45 memory_monitor_summary.json
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:45 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas   3402262 Nov 26 20:46 log.47556149._002255.job.log.tgz.1
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas      8673 Nov 26 20:46 heartbeat.json
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas        95 Nov 26 20:47 pilot_heartbeat.json
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:47 boinc_mmap_file
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas        30 Nov 26 20:47 wrapper_checkpoint.txt
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas      4824 Nov 26 20:47 pilotlog.txt
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas  19662585 Nov 26 20:47 log.47556149._002255.job.log.1
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas       353 Nov 26 20:47 output.list
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:47 runtime_log
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas  23080960 Nov 26 20:47 result.tar.gz
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas       671 Nov 26 20:47 zLxMDm67dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTTLKDmVCmnzn.diag
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 20:47 runtime_log.err
[2025-11-26 20:47:45] -rw-r--r--. 1 boincer umatlas     21893 Nov 26 20:47 stderr.txt
[2025-11-26 20:47:45] HITS file was successfully produced:
[2025-11-26 20:47:45] -rw-------. 1 boincer umatlas 927207948 Nov 26 20:44 shared/HITS.pool.root.1
[2025-11-26 20:47:46]  *** Contents of shared directory: ***
[2025-11-26 20:47:46] total 1327680
[2025-11-26 20:47:46] -rw-r--r--. 2 boincer umatlas 408631289 Nov 25 00:05 ATLAS.root_0
[2025-11-26 20:47:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-26 20:47:46] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:05 input.tar.gz
[2025-11-26 20:47:46] -rw-------. 1 boincer umatlas 927207948 Nov 26 20:44 HITS.pool.root.1
[2025-11-26 20:47:46] -rw-------. 1 boincer umatlas  23080960 Nov 26 20:47 result.tar.gz
20:47:47 (129636): run_atlas exited; CPU time 266143.132062
20:47:47 (129636): called boinc_finish(0)

</stderr_txt>
]]>

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