Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:53:56 (3797992): wrapper (7.7.26015): starting
06:53:56 (3797992): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 06:53:56] Arguments: --nthreads 9
[2025-11-25 06:53:56] Threads: 9
[2025-11-25 06:53:56] Checking for CVMFS
[2025-11-25 06:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 06:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 06:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 06:53:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 06:53:57] 2.13.3.0 9428 26880 328844 153281 1 267 9517002 18491392 27924 16776704 0 131799383 99.316 216772918 33415 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 06:53:57] CVMFS is ok
[2025-11-25 06:53:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 06:53:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 06:53:57] Further information can be found at the LHC@home message board.
[2025-11-25 06:53:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 06:53:57] Checking for apptainer binary...
[2025-11-25 06:53:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 06:53:58] Running /usr/bin/apptainer --version
[2025-11-25 06:53:58] apptainer version 1.4.4-1.el9
[2025-11-25 06:53:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 06:53:58] c-8-38.aglt2.org
[2025-11-25 06:53:58] apptainer works
[2025-11-25 06:53:58] Set ATHENA_PROC_NUMBER=9
[2025-11-25 06:53:58] Set ATHENA_CORE_NUMBER=9
[2025-11-25 06:53:58] Starting ATLAS job with PandaID=6895386430
[2025-11-25 06:53:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:49:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:49:28] 2025-11-26 03:48:53,769 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:49:28] 2025-11-26 03:48:53,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:49:28] 2025-11-26 03:48:53,787 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:49:28] 2025-11-26 03:48:53,789 | INFO     | sum of square deviations: 255912168980.04794
[2025-11-25 22:49:28] 2025-11-26 03:48:53,812 | INFO     | sum of deviations: 1737966767792.9148
[2025-11-25 22:49:28] 2025-11-26 03:48:53,812 | INFO     | mean x: 1764100278.8304904
[2025-11-25 22:49:28] 2025-11-26 03:48:53,812 | INFO     | mean y: 3125508.842217484
[2025-11-25 22:49:28] 2025-11-26 03:48:53,813 | INFO     | intersect: -11977342914.684145
[2025-11-25 22:49:28] 2025-11-26 03:48:53,814 | INFO     | chi2: 9.297368613324867
[2025-11-25 22:49:28] 2025-11-26 03:48:53,815 | INFO     | sum of square deviations: 251841952358.6496
[2025-11-25 22:49:28] 2025-11-26 03:48:53,836 | INFO     | sum of deviations: 2073234971201.2092
[2025-11-25 22:49:28] 2025-11-26 03:48:53,836 | INFO     | mean x: 1764100126.3376205
[2025-11-25 22:49:28] 2025-11-26 03:48:53,837 | INFO     | mean y: 3138072.697749196
[2025-11-25 22:49:28] 2025-11-26 03:48:53,837 | INFO     | intersect: -14519438648.019178
[2025-11-25 22:49:28] 2025-11-26 03:48:53,838 | INFO     | chi2: 6.208704597614577
[2025-11-25 22:49:28] 2025-11-26 03:48:53,838 | INFO     | current chi2=6.208704597614577 (change=33.22084069339422 %)
[2025-11-25 22:49:28] 2025-11-26 03:48:53,839 | INFO     | sum of square deviations: 247815131899.65668
[2025-11-25 22:49:28] 2025-11-26 03:48:53,860 | INFO     | sum of deviations: 2371642695688.2275
[2025-11-25 22:49:28] 2025-11-26 03:48:53,860 | INFO     | mean x: 1764099973.8448277
[2025-11-25 22:49:28] 2025-11-26 03:48:53,860 | INFO     | mean y: 3149363.557112069
[2025-11-25 22:49:28] 2025-11-26 03:48:53,861 | INFO     | intersect: -16879656724.034649
[2025-11-25 22:49:28] 2025-11-26 03:48:53,862 | INFO     | chi2: 3.5680036830426056
[2025-11-25 22:49:28] 2025-11-26 03:48:53,862 | INFO     | current chi2=3.5680036830426056 (change=42.53223636354909 %)
[2025-11-25 22:49:28] 2025-11-26 03:48:53,863 | INFO     | sum of square deviations: 243831305587.66614
[2025-11-25 22:49:28] 2025-11-26 03:48:53,884 | INFO     | sum of deviations: 2459712057707.546
[2025-11-25 22:49:28] 2025-11-26 03:48:53,884 | INFO     | mean x: 1764099821.3488624
[2025-11-25 22:49:28] 2025-11-26 03:48:53,884 | INFO     | mean y: 3152731.520043337
[2025-11-25 22:49:28] 2025-11-26 03:48:53,884 | INFO     | intersect: -17792665533.544506
[2025-11-25 22:49:28] 2025-11-26 03:48:53,886 | INFO     | chi2: 3.2064122115632614
[2025-11-25 22:49:28] 2025-11-26 03:48:53,886 | INFO     | current chi2=3.2064122115632614 (change=10.134279658898727 %)
[2025-11-25 22:49:28] 2025-11-26 03:48:53,886 | INFO     | right removable region: 922
[2025-11-25 22:49:28] 2025-11-26 03:48:53,887 | INFO     | sum of square deviations: 251841191078.64963
[2025-11-25 22:49:28] 2025-11-26 03:48:53,920 | INFO     | sum of deviations: 1397004731365.9868
[2025-11-25 22:49:28] 2025-11-26 03:48:53,921 | INFO     | mean x: 1764100431.3376205
[2025-11-25 22:49:28] 2025-11-26 03:48:53,921 | INFO     | mean y: 3138274.2540192925
[2025-11-25 22:49:28] 2025-11-26 03:48:53,921 | INFO     | intersect: -9782618529.97658
[2025-11-25 22:49:28] 2025-11-26 03:48:53,922 | INFO     | chi2: 6.40728897346859
[2025-11-25 22:49:28] 2025-11-26 03:48:53,922 | INFO     | current chi2=6.40728897346859 (change=31.08492047646958 %)
[2025-11-25 22:49:28] 2025-11-26 03:48:53,924 | INFO     | sum of square deviations: 247814007248.42993
[2025-11-25 22:49:28] 2025-11-26 03:48:53,946 | INFO     | sum of deviations: 1315609037676.5984
[2025-11-25 22:49:28] 2025-11-26 03:48:53,946 | INFO     | mean x: 1764100583.8372846
[2025-11-25 22:49:28] 2025-11-26 03:48:53,946 | INFO     | mean y: 3141355.699353448
[2025-11-25 22:49:28] 2025-11-26 03:48:53,946 | INFO     | intersect: -9362215741.08598
[2025-11-25 22:49:28] 2025-11-26 03:48:53,947 | INFO     | chi2: 6.325499082618875
[2025-11-25 22:49:28] 2025-11-26 03:48:53,948 | INFO     | current chi2=6.325499082618875 (change=1.2765132209330892 %)
[2025-11-25 22:49:28] 2025-11-26 03:48:53,948 | INFO     | left removable region: 20
[2025-11-25 22:49:28] 2025-11-26 03:48:53,949 | INFO     | sum of square deviations: 227564177144.55115
[2025-11-25 22:49:28] 2025-11-26 03:48:53,980 | INFO     | sum of deviations: 1945402745526.9817
[2025-11-25 22:49:28] 2025-11-26 03:48:53,980 | INFO     | mean x: 1764100400.8569844
[2025-11-25 22:49:28] 2025-11-26 03:48:53,980 | INFO     | mean y: 3173203.8913525497
[2025-11-25 22:49:28] 2025-11-26 03:48:53,980 | INFO     | intersect: -15077784644.023598
[2025-11-25 22:49:28] 2025-11-26 03:48:53,982 | INFO     | chi2: 0.15347109331189274
[2025-11-25 22:49:28] 2025-11-26 03:48:53,982 | INFO     | current memory leak: 8.55 B/s (using 902 data points, chi2=0.15)
[2025-11-25 22:49:28] 2025-11-26 03:48:53,989 | INFO     | could have reported an average CPU frequency of 2600 MHz (35 samples)
[2025-11-25 22:49:28] 2025-11-26 03:48:53,990 | INFO     | ..............................
[2025-11-25 22:49:28] 2025-11-26 03:48:53,990 | INFO     | . Timing measurements:
[2025-11-25 22:49:28] 2025-11-26 03:48:53,990 | INFO     | . get job = 0 s
[2025-11-25 22:49:28] 2025-11-26 03:48:53,990 | INFO     | . initial setup = 3 s
[2025-11-25 22:49:28] 2025-11-26 03:48:53,990 | INFO     | . payload setup = 10 s
[2025-11-25 22:49:28] 2025-11-26 03:48:53,990 | INFO     | . stage-in = 0 s
[2025-11-25 22:49:28] 2025-11-26 03:48:53,990 | INFO     | . payload execution = 57210 s
[2025-11-25 22:49:28] 2025-11-26 03:48:53,991 | INFO     | . stage-out = 5 s
[2025-11-25 22:49:28] 2025-11-26 03:48:53,991 | INFO     | . log creation = 1 s
[2025-11-25 22:49:28] 2025-11-26 03:48:53,991 | INFO     | ..............................
[2025-11-25 22:49:28] 2025-11-26 03:48:54,100 | INFO     | 
[2025-11-25 22:49:28] 2025-11-26 03:48:54,100 | INFO     | job summary report
[2025-11-25 22:49:28] 2025-11-26 03:48:54,100 | INFO     | --------------------------------------------------
[2025-11-25 22:49:28] 2025-11-26 03:48:54,100 | INFO     | PanDA job id: 6895386430
[2025-11-25 22:49:28] 2025-11-26 03:48:54,100 | INFO     | task id: 47556149
[2025-11-25 22:49:28] 2025-11-26 03:48:54,100 | INFO     | errors: (none)
[2025-11-25 22:49:28] 2025-11-26 03:48:54,100 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | pilot state: finished 
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | transexitcode: 0
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | exeerrorcode: 0
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | exeerrordiag: 
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | exitcode: 0
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | exitmsg: OK
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | cpuconsumptiontime: 297768 s
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | nevents: 1000
[2025-11-25 22:49:28] 2025-11-26 03:48:54,101 | INFO     | neventsw: 0
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | pid: 3809152
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | pgrp: 3809152
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | corecount: 9
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | event service: False
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | sizes: {0: 2284143, 1: 2284342, 10: 2284604, 12: 2284632, 57225: 2336660, 57232: 2345682, 57235: 2345866, 57253: 2346112}
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | --------------------------------------------------
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | 
[2025-11-25 22:49:28] 2025-11-26 03:48:54,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 22:49:28] 2025-11-26 03:48:54,142 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,142 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,142 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,142 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,142 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,142 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,142 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,143 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,143 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:49:28] 2025-11-26 03:48:54,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:49:28] 2025-11-26 03:48:54,151 | INFO     | job 6895386430 has completed (purged errors)
[2025-11-25 22:49:28] 2025-11-26 03:48:54,151 | INFO     | overall cleanup function is called
[2025-11-25 22:49:28] 2025-11-26 03:48:55,168 | INFO     | --- collectZombieJob: --- 10, [3809152]
[2025-11-25 22:49:28] 2025-11-26 03:48:55,168 | INFO     | zombie collector waiting for pid 3809152
[2025-11-25 22:49:28] 2025-11-26 03:48:55,168 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:49:28] 2025-11-26 03:48:55,168 | INFO     | collected zombie processes
[2025-11-25 22:49:28] 2025-11-26 03:48:55,168 | INFO     | will attempt to kill all subprocesses of pid=3809152
[2025-11-25 22:49:28] 2025-11-26 03:48:55,874 | INFO     | process IDs to be killed: [3809152] (in reverse order)
[2025-11-25 22:49:28] 2025-11-26 03:48:56,035 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:49:28] 2025-11-26 03:48:56,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:49:28] 2025-11-26 03:48:56,056 | INFO     | did not find any defunct processes belonging to 3809152
[2025-11-25 22:49:28] 2025-11-26 03:48:56,074 | INFO     | did not find any defunct processes belonging to 3809152
[2025-11-25 22:49:28] 2025-11-26 03:48:56,076 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:49:28] 2025-11-26 03:48:56,076 | INFO     | ready for new job
[2025-11-25 22:49:28] 2025-11-26 03:48:56,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:49:28] 2025-11-26 03:48:56,081 | INFO     | ***************************************
[2025-11-25 22:49:28] 2025-11-26 03:48:56,081 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:49:28] 2025-11-26 03:48:56,081 | INFO     | ***************************************
[2025-11-25 22:49:28] 2025-11-26 03:48:56,081 | INFO     | 
[2025-11-25 22:49:28] 2025-11-26 03:48:56,083 | INFO     | architecture information:
[2025-11-25 22:49:28] 2025-11-26 03:48:56,084 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:49:28] 2025-11-26 03:48:56,150 | INFO     | cat /etc/os-release:
[2025-11-25 22:49:28] NAME="CentOS Linux"
[2025-11-25 22:49:28] VERSION="7 (Core)"
[2025-11-25 22:49:28] ID="centos"
[2025-11-25 22:49:28] ID_LIKE="rhel fedora"
[2025-11-25 22:49:28] VERSION_ID="7"
[2025-11-25 22:49:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:49:28] ANSI_COLOR="0;31"
[2025-11-25 22:49:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:49:28] HOME_URL="https://www.centos.org/"
[2025-11-25 22:49:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:49:28] 
[2025-11-25 22:49:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:49:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:49:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:49:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:49:28] 
[2025-11-25 22:49:28] 2025-11-26 03:48:56,150 | INFO     | ***************************************
[2025-11-25 22:49:28] 2025-11-26 03:48:56,654 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 22:49:28] 2025-11-26 03:48:56,699 | INFO     | sufficient remaining disk space (91235549184 B)
[2025-11-25 22:49:28] 2025-11-26 03:48:56,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:49:28] 2025-11-26 03:48:56,700 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:49:28] 2025-11-26 03:48:56,700 | INFO     | update_server=False
[2025-11-25 22:49:28] 2025-11-26 03:48:56,700 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:49:28] 2025-11-26 03:48:56,716 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:49:28] 2025-11-26 03:48:57,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:49:28] 2025-11-26 03:48:57,276 | INFO     | aborting loop
[2025-11-25 22:49:28] 2025-11-26 03:48:57,540 | INFO     | all data control threads have been joined
[2025-11-25 22:49:28] 2025-11-26 03:48:57,684 | INFO     | all payload control threads have been joined
[2025-11-25 22:49:28] 2025-11-26 03:48:57,706 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,092 | INFO     | [job] validate thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,283 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,296 | INFO     | all job control threads have been joined
[2025-11-25 22:49:28] 2025-11-26 03:48:58,302 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,305 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,546 | INFO     | [data] control thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,559 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,690 | INFO     | [payload] control thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,718 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:58,733 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:59,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:49:28] 2025-11-26 03:48:59,122 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:59,201 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:59,280 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:48:59,313 | INFO     | [job] control thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:49:00,121 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:49:00,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:49:28] 2025-11-26 03:49:01,777 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:49:28] 2025-11-26 03:49:04,205 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:49:28] 2025-11-26 03:49:06,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955778615104)>', '<ExcThread(monitor, started 139954906711808)>']
[2025-11-25 22:49:28] 2025-11-26 03:49:11,271 | INFO     | all workflow threads have been joined
[2025-11-25 22:49:28] 2025-11-26 03:49:11,271 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:49:28] 2025-11-26 03:49:11,274 | INFO     | traces error code: 0
[2025-11-25 22:49:28] 2025-11-26 03:49:11,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:49:28] 2025-11-26 03:49:27,698 | INFO     | PID=3802626 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 22:49:28] 2025-11-26 03:49:27,698 | INFO     | .. there are 42 such processes running
[2025-11-25 22:49:28] 2025-11-26 03:49:27,698 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:49:28] 2025-11-26 03:49:27,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:49:28] 2025-11-26 03:49:27,699 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:49:28] 2025-11-26 03:49:27,699 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:49:28] 2025-11-26 03:49:27,699 | INFO     | [monitor] control thread has ended
[2025-11-25 22:49:28] 2025-11-26 03:49:27,873 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:49:28] 2025-11-26 03:49:27,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:49:28] 2025-11-26 03:49:27,881 [wrapper] pilotpid: 3802626
[2025-11-25 22:49:28] 2025-11-26 03:49:27,884 [wrapper] Pilot exit status: 0
[2025-11-25 22:49:28] 2025-11-26 03:49:27,924 [wrapper] pandaids: 6895386430
[2025-11-25 22:49:28] 2025-11-26 03:49:28,286 [wrapper] cleanup supervisor_pilot 2283764 3802627
[2025-11-25 22:49:28] 2025-11-26 03:49:28,302 [wrapper] Test setup, not cleaning
[2025-11-25 22:49:28] 2025-11-26 03:49:28,321 [wrapper] apfmon messages muted
[2025-11-25 22:49:28] 2025-11-26 03:49:28,326 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:49:28] 2025-11-26 03:49:28,345 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:49:28]  *** Error codes and diagnostics ***
[2025-11-25 22:49:28]     "exeErrorCode": 0,
[2025-11-25 22:49:28]     "exeErrorDiag": "",
[2025-11-25 22:49:28]     "pilotErrorCode": 0,
[2025-11-25 22:49:28]     "pilotErrorDiag": "",
[2025-11-25 22:49:28]  *** Listing of results directory ***
[2025-11-25 22:49:28] total 1323120
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-25 22:49:28] -rwx------. 1 boincer umatlas     36292 Nov 24 00:18 runpilot2-wrapper.sh
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas       100 Nov 25 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:49:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 06:53 run_atlas
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas       105 Nov 25 06:53 job.xml
[2025-11-25 22:49:28] -rw-r--r--. 2 boincer umatlas 412636832 Nov 25 06:53 EVNT.47483658._001242.pool.root.1
[2025-11-25 22:49:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 06:53 start_atlas.sh
[2025-11-25 22:49:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 06:53 shared
[2025-11-25 22:49:28] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 06:53 input.tar.gz
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas         0 Nov 25 06:53 boinc_lockfile
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 06:53 pandaJob.out
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas        57 Nov 25 06:53 setup.sh.local
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas    991894 Nov 25 06:54 agis_schedconf.cvmfs.json
[2025-11-25 22:49:28] drwx------. 5 boincer umatlas      4096 Nov 25 06:54 pilot3
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas       533 Nov 25 22:30 boinc_task_state.xml
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas 918965248 Nov 25 22:47 HITS.47556149._002283.pool.root.1
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas      6663 Nov 25 22:48 init_data.xml
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas      1057 Nov 25 22:48 memory_monitor_summary.json
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas   1516240 Nov 25 22:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas   2225254 Nov 25 22:48 log.47556149._002283.job.log.tgz.1
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas        95 Nov 25 22:48 pilot_heartbeat.json
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas      8614 Nov 25 22:48 heartbeat.json
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 22:49 boinc_mmap_file
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas       823 Nov 25 22:49 pilotlog.txt
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas        29 Nov 25 22:49 wrapper_checkpoint.txt
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas   7448373 Nov 25 22:49 log.47556149._002283.job.log.1
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas       353 Nov 25 22:49 output.list
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas       620 Nov 25 22:49 runtime_log
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas   9697280 Nov 25 22:49 result.tar.gz
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas       658 Nov 25 22:49 UFoNDml8dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkTLKDmFdnuXo.diag
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 22:49 runtime_log.err
[2025-11-25 22:49:28] -rw-r--r--. 1 boincer umatlas     21135 Nov 25 22:49 stderr.txt
[2025-11-25 22:49:28] HITS file was successfully produced:
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas 918965248 Nov 25 22:47 shared/HITS.pool.root.1
[2025-11-25 22:49:28]  *** Contents of shared directory: ***
[2025-11-25 22:49:28] total 1310472
[2025-11-25 22:49:28] -rw-r--r--. 2 boincer umatlas 412636832 Nov 25 06:53 ATLAS.root_0
[2025-11-25 22:49:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 06:53 start_atlas.sh
[2025-11-25 22:49:28] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 06:53 input.tar.gz
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas 918965248 Nov 25 22:47 HITS.pool.root.1
[2025-11-25 22:49:28] -rw-------. 1 boincer umatlas   9697280 Nov 25 22:49 result.tar.gz
22:49:30 (3797992): run_atlas exited; CPU time 299603.309405
22:49:30 (3797992): called boinc_finish(0)

</stderr_txt>
]]>

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