Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:47:09 (2880001): wrapper (7.7.26015): starting
15:47:09 (2880001): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:47:09] Arguments: --nthreads 8
[2025-11-25 15:47:09] Threads: 8
[2025-11-25 15:47:09] Checking for CVMFS
[2025-11-25 15:47:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:47:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:47:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:47:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:47:10] 2.13.3.0 12348 29110 390136 153297 1 333 31300748 32935936 37989 16776704 0 143819744 99.495 184136744 35583 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 15:47:10] CVMFS is ok
[2025-11-25 15:47:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:47:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:47:10] Further information can be found at the LHC@home message board.
[2025-11-25 15:47:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:47:10] Checking for apptainer binary...
[2025-11-25 15:47:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:47:10] Running /usr/bin/apptainer --version
[2025-11-25 15:47:10] apptainer version 1.4.4-1.el9
[2025-11-25 15:47:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:47:11] c6-12-27-2.aglt2.org
[2025-11-25 15:47:11] apptainer works
[2025-11-25 15:47:11] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:47:11] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:47:11] Starting ATLAS job with PandaID=6895385467
[2025-11-25 15:47:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:42:36]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:42:36] 2025-11-27 04:41:19,137 | INFO     | time since job start (114799s) is within the limit (172800.0s)
[2025-11-26 23:42:36] 2025-11-27 04:41:21,145 | INFO     | time since job start (114801s) is within the limit (172800.0s)
[2025-11-26 23:42:36] 2025-11-27 04:41:21,222 | INFO     | monitor loop #6488: job 0:6895385467 is in state 'finished'
[2025-11-26 23:42:36] 2025-11-27 04:41:21,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:36] 2025-11-27 04:41:23,152 | INFO     | time since job start (114803s) is within the limit (172800.0s)
[2025-11-26 23:42:36] 2025-11-27 04:41:23,728 | INFO     | monitor loop #6489: job 0:6895385467 is in state 'finished'
[2025-11-26 23:42:36] 2025-11-27 04:41:23,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:36] 2025-11-27 04:41:25,159 | INFO     | time since job start (114805s) is within the limit (172800.0s)
[2025-11-26 23:42:36] 2025-11-27 04:41:26,236 | INFO     | monitor loop #6490: job 0:6895385467 is in state 'finished'
[2025-11-26 23:42:36] 2025-11-27 04:41:26,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:36] 2025-11-27 04:41:27,166 | INFO     | time since job start (114807s) is within the limit (172800.0s)
[2025-11-26 23:42:36] 2025-11-27 04:41:28,741 | INFO     | monitor loop #6491: job 0:6895385467 is in state 'finished'
[2025-11-26 23:42:36] 2025-11-27 04:41:28,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:36] 2025-11-27 04:41:29,175 | INFO     | time since job start (114809s) is within the limit (172800.0s)
[2025-11-26 23:42:36] 2025-11-27 04:41:30,999 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 23:42:36] 2025-11-27 04:41:31,014 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2629.5206041666665
[2025-11-26 23:42:36] 2025-11-27 04:41:31,030 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895385467/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,031 | INFO     | extracted standard info from prmon json
[2025-11-26 23:42:36] 2025-11-27 04:41:31,032 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:42:36] 2025-11-27 04:41:31,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:42:36] 2025-11-27 04:41:31,061 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:42:36] 2025-11-27 04:41:31,063 | INFO     | sum of square deviations: 2060438265273.938
[2025-11-26 23:42:36] 2025-11-27 04:41:31,210 | INFO     | time since job start (114811s) is within the limit (172800.0s)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,248 | INFO     | sum of deviations: 9791402115931.613
[2025-11-26 23:42:36] 2025-11-27 04:41:31,249 | INFO     | mean x: 1764161109.1441488
[2025-11-26 23:42:36] 2025-11-27 04:41:31,249 | INFO     | mean y: 2976159.4515957446
[2025-11-26 23:42:36] 2025-11-27 04:41:31,249 | INFO     | intersect: -8380488226.763214
[2025-11-26 23:42:36] 2025-11-27 04:41:31,262 | INFO     | monitor loop #6492: job 0:6895385467 is in state 'finished'
[2025-11-26 23:42:36] 2025-11-27 04:41:31,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,263 | INFO     | chi2: 15.712090965504729
[2025-11-26 23:42:36] 2025-11-27 04:41:31,273 | INFO     | sum of square deviations: 2044044087933.8848
[2025-11-26 23:42:36] 2025-11-27 04:41:31,348 | INFO     | sum of deviations: 10440206868808.6
[2025-11-26 23:42:36] 2025-11-27 04:41:31,348 | INFO     | mean x: 1764160956.6512
[2025-11-26 23:42:36] 2025-11-27 04:41:31,348 | INFO     | mean y: 2982195.3312
[2025-11-26 23:42:36] 2025-11-27 04:41:31,348 | INFO     | intersect: -9007687117.545946
[2025-11-26 23:42:36] 2025-11-27 04:41:31,351 | INFO     | chi2: 12.6277249384728
[2025-11-26 23:42:36] 2025-11-27 04:41:31,351 | INFO     | current chi2=12.6277249384728 (change=19.630525522055155 %)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,351 | INFO     | right removable region: 1874
[2025-11-26 23:42:36] 2025-11-27 04:41:31,354 | INFO     | sum of square deviations: 2044041055623.886
[2025-11-26 23:42:36] 2025-11-27 04:41:31,428 | INFO     | sum of deviations: 9070902024353.785
[2025-11-26 23:42:36] 2025-11-27 04:41:31,428 | INFO     | mean x: 1764161261.6512
[2025-11-26 23:42:36] 2025-11-27 04:41:31,428 | INFO     | mean y: 2982859.544
[2025-11-26 23:42:36] 2025-11-27 04:41:31,428 | INFO     | intersect: -7825888246.332136
[2025-11-26 23:42:36] 2025-11-27 04:41:31,431 | INFO     | chi2: 12.136669162987246
[2025-11-26 23:42:36] 2025-11-27 04:41:31,431 | INFO     | current chi2=12.136669162987246 (change=22.755862414284504 %)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,431 | INFO     | left removable region: 10
[2025-11-26 23:42:36] 2025-11-27 04:41:31,434 | INFO     | sum of square deviations: 2008277488217.1091
[2025-11-26 23:42:36] 2025-11-27 04:41:31,511 | INFO     | sum of deviations: 9064586104797.342
[2025-11-26 23:42:36] 2025-11-27 04:41:31,512 | INFO     | mean x: 1764161231.1668456
[2025-11-26 23:42:36] 2025-11-27 04:41:31,512 | INFO     | mean y: 2996165.9603004293
[2025-11-26 23:42:36] 2025-11-27 04:41:31,512 | INFO     | intersect: -7959743782.319385
[2025-11-26 23:42:36] 2025-11-27 04:41:31,514 | INFO     | chi2: 5.460993074860005
[2025-11-26 23:42:36] 2025-11-27 04:41:31,514 | INFO     | current memory leak: 4.51 B/s (using 1864 data points, chi2=5.46)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | could have reported an average CPU frequency of 2714 MHz (66 samples)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | ..............................
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | . Timing measurements:
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | . get job = 0 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | . initial setup = 4 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | . payload setup = 31 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | . stage-in = 0 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,516 | INFO     | . payload execution = 114698 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,517 | INFO     | . stage-out = 4 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,517 | INFO     | . log creation = 1 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,517 | INFO     | ..............................
[2025-11-26 23:42:36] 2025-11-27 04:41:31,608 | INFO     | 
[2025-11-26 23:42:36] 2025-11-27 04:41:31,608 | INFO     | job summary report
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | --------------------------------------------------
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | PanDA job id: 6895385467
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | task id: 47556149
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | errors: (none)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | pilot state: finished 
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | transexitcode: 0
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | exeerrorcode: 0
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | exeerrordiag: 
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | exitcode: 0
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | exitmsg: OK
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | cpuconsumptiontime: 266293 s
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | nevents: 1000
[2025-11-26 23:42:36] 2025-11-27 04:41:31,609 | INFO     | neventsw: 0
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | pid: 2901800
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | pgrp: 2901800
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | corecount: 8
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | event service: False
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | sizes: {0: 2283486, 1: 2284171, 2: 2284370, 13: 2284370, 24: 2284426, 26: 2284716, 35: 2284872, 114734: 2361596, 114741: 2370646, 114754: 2370836}
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | --------------------------------------------------
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | 
[2025-11-26 23:42:36] 2025-11-27 04:41:31,610 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 23:42:36] 2025-11-27 04:41:31,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:42:36] 2025-11-27 04:41:31,653 | INFO     | job 6895385467 has completed (purged errors)
[2025-11-26 23:42:36] 2025-11-27 04:41:31,654 | INFO     | overall cleanup function is called
[2025-11-26 23:42:36] 2025-11-27 04:41:32,697 | INFO     | --- collectZombieJob: --- 10, [2901800]
[2025-11-26 23:42:36] 2025-11-27 04:41:32,698 | INFO     | zombie collector waiting for pid 2901800
[2025-11-26 23:42:36] 2025-11-27 04:41:32,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:42:36] 2025-11-27 04:41:32,698 | INFO     | collected zombie processes
[2025-11-26 23:42:36] 2025-11-27 04:41:32,698 | INFO     | will attempt to kill all subprocesses of pid=2901800
[2025-11-26 23:42:36] 2025-11-27 04:41:33,542 | INFO     | process IDs to be killed: [2901800] (in reverse order)
[2025-11-26 23:42:36] 2025-11-27 04:41:33,706 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:42:36] 2025-11-27 04:41:33,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:42:36] 2025-11-27 04:41:33,736 | INFO     | did not find any defunct processes belonging to 2901800
[2025-11-26 23:42:36] 2025-11-27 04:41:33,758 | INFO     | did not find any defunct processes belonging to 2901800
[2025-11-26 23:42:36] 2025-11-27 04:41:33,759 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:42:36] 2025-11-27 04:41:33,759 | INFO     | ready for new job
[2025-11-26 23:42:36] 2025-11-27 04:41:33,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:42:36] 2025-11-27 04:41:33,768 | INFO     | ***************************************
[2025-11-26 23:42:36] 2025-11-27 04:41:33,768 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:42:36] 2025-11-27 04:41:33,768 | INFO     | ***************************************
[2025-11-26 23:42:36] 2025-11-27 04:41:33,768 | INFO     | 
[2025-11-26 23:42:36] 2025-11-27 04:41:33,773 | INFO     | architecture information:
[2025-11-26 23:42:36] 2025-11-27 04:41:33,774 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:42:36] 2025-11-27 04:41:33,797 | INFO     | cat /etc/os-release:
[2025-11-26 23:42:36] NAME="CentOS Linux"
[2025-11-26 23:42:36] VERSION="7 (Core)"
[2025-11-26 23:42:36] ID="centos"
[2025-11-26 23:42:36] ID_LIKE="rhel fedora"
[2025-11-26 23:42:36] VERSION_ID="7"
[2025-11-26 23:42:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:42:36] ANSI_COLOR="0;31"
[2025-11-26 23:42:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:42:36] HOME_URL="https://www.centos.org/"
[2025-11-26 23:42:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:42:36] 
[2025-11-26 23:42:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:42:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:42:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:42:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:42:36] 
[2025-11-26 23:42:36] 2025-11-27 04:41:33,797 | INFO     | ***************************************
[2025-11-26 23:42:36] 2025-11-27 04:41:34,301 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 23:42:36] 2025-11-27 04:41:34,402 | INFO     | sufficient remaining disk space (89084919808 B)
[2025-11-26 23:42:36] 2025-11-27 04:41:34,403 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:42:36] 2025-11-27 04:41:34,403 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:42:36] 2025-11-27 04:41:34,403 | INFO     | update_server=False
[2025-11-26 23:42:36] 2025-11-27 04:41:34,403 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:42:36] 2025-11-27 04:41:34,404 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:42:36] 2025-11-27 04:41:34,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:42:36] 2025-11-27 04:41:34,487 | INFO     | all payload control threads have been joined
[2025-11-26 23:42:36] 2025-11-27 04:41:34,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:42:36] 2025-11-27 04:41:34,776 | INFO     | aborting loop
[2025-11-26 23:42:36] 2025-11-27 04:41:34,962 | INFO     | all data control threads have been joined
[2025-11-26 23:42:36] 2025-11-27 04:41:35,409 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,460 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,461 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,493 | INFO     | [payload] control thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,518 | INFO     | [job] validate thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,600 | INFO     | all job control threads have been joined
[2025-11-26 23:42:36] 2025-11-27 04:41:35,677 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,782 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,967 | INFO     | [data] control thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:35,975 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:36,008 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:36,411 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:36,606 | INFO     | [job] control thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:36,644 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:36,645 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:36,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:42:36] 2025-11-27 04:41:37,659 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:41:38,421 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:42:36] 2025-11-27 04:42:05,048 | INFO     | PID=2886897 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:42:36] 2025-11-27 04:42:05,048 | INFO     | .. there are 45 such processes running
[2025-11-26 23:42:36] 2025-11-27 04:42:05,048 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:42:36] 2025-11-27 04:42:05,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:42:36] 2025-11-27 04:42:05,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:42:36] 2025-11-27 04:42:29,113 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:42:36] 2025-11-27 04:42:30,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204196755264)>', '<ExcThread(monitor, started 140203385657088)>']
[2025-11-26 23:42:36] 2025-11-27 04:42:31,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:42:36] 2025-11-27 04:42:31,254 | INFO     | [monitor] control thread has ended
[2025-11-26 23:42:36] 2025-11-27 04:42:35,795 | INFO     | all workflow threads have been joined
[2025-11-26 23:42:36] 2025-11-27 04:42:35,795 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:42:36] 2025-11-27 04:42:35,796 | INFO     | traces error code: 0
[2025-11-26 23:42:36] 2025-11-27 04:42:35,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:42:36] 2025-11-27 04:42:36,037 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:42:36] 2025-11-27 04:42:36,041 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:42:36] 2025-11-27 04:42:36,043 [wrapper] pilotpid: 2886897
[2025-11-26 23:42:36] 2025-11-27 04:42:36,046 [wrapper] Pilot exit status: 0
[2025-11-26 23:42:36] 2025-11-27 04:42:36,056 [wrapper] pandaids: 6895385467
[2025-11-26 23:42:36] 2025-11-27 04:42:36,204 [wrapper] cleanup supervisor_pilot 2970969 2886898
[2025-11-26 23:42:36] 2025-11-27 04:42:36,211 [wrapper] Test setup, not cleaning
[2025-11-26 23:42:36] 2025-11-27 04:42:36,222 [wrapper] apfmon messages muted
[2025-11-26 23:42:36] 2025-11-27 04:42:36,225 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:42:36] 2025-11-27 04:42:36,228 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:42:36]  *** Error codes and diagnostics ***
[2025-11-26 23:42:36]     "exeErrorCode": 0,
[2025-11-26 23:42:36]     "exeErrorDiag": "",
[2025-11-26 23:42:36]     "pilotErrorCode": 0,
[2025-11-26 23:42:36]     "pilotErrorDiag": "",
[2025-11-26 23:42:36]  *** Listing of results directory ***
[2025-11-26 23:42:36] total 1338364
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-26 23:42:36] -rwx------. 1 boincer umatlas     36292 Nov 24 00:18 runpilot2-wrapper.sh
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas       100 Nov 25 15:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:42:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 15:47 run_atlas
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas       105 Nov 25 15:47 job.xml
[2025-11-26 23:42:36] -rw-r--r--. 2 boincer umatlas 408631289 Nov 25 15:47 EVNT.47483658._001239.pool.root.1
[2025-11-26 23:42:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 15:47 start_atlas.sh
[2025-11-26 23:42:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 15:47 shared
[2025-11-26 23:42:36] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 15:47 input.tar.gz
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas         0 Nov 25 15:47 boinc_lockfile
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 15:47 pandaJob.out
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas        57 Nov 25 15:47 setup.sh.local
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas    991893 Nov 25 15:47 agis_schedconf.cvmfs.json
[2025-11-26 23:42:36] drwx------. 5 boincer umatlas      4096 Nov 25 15:48 pilot3
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas       534 Nov 26 23:29 boinc_task_state.xml
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas      6881 Nov 26 23:37 init_data.xml
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas 924285543 Nov 26 23:40 HITS.47556149._002260.pool.root.1
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas      1059 Nov 26 23:41 memory_monitor_summary.json
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas        95 Nov 26 23:41 pilot_heartbeat.json
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:41 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas   2780373 Nov 26 23:41 log.47556149._002260.job.log.tgz.1
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas      8637 Nov 26 23:41 heartbeat.json
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas      4824 Nov 26 23:42 pilotlog.txt
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:42 boinc_mmap_file
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:42 wrapper_checkpoint.txt
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas  14039696 Nov 26 23:42 log.47556149._002260.job.log.1
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas       353 Nov 26 23:42 output.list
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:42 runtime_log
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas  16844800 Nov 26 23:42 result.tar.gz
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas       665 Nov 26 23:42 UkeNDml8dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcTLKDmkEGxpm.diag
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 23:42 runtime_log.err
[2025-11-26 23:42:36] -rw-r--r--. 1 boincer umatlas     21791 Nov 26 23:42 stderr.txt
[2025-11-26 23:42:36] HITS file was successfully produced:
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas 924285543 Nov 26 23:40 shared/HITS.pool.root.1
[2025-11-26 23:42:36]  *** Contents of shared directory: ***
[2025-11-26 23:42:36] total 1318736
[2025-11-26 23:42:36] -rw-r--r--. 2 boincer umatlas 408631289 Nov 25 15:47 ATLAS.root_0
[2025-11-26 23:42:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 15:47 start_atlas.sh
[2025-11-26 23:42:36] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 15:47 input.tar.gz
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas 924285543 Nov 26 23:40 HITS.pool.root.1
[2025-11-26 23:42:36] -rw-------. 1 boincer umatlas  16844800 Nov 26 23:42 result.tar.gz
23:42:37 (2880001): run_atlas exited; CPU time 271323.759236
23:42:37 (2880001): called boinc_finish(0)

</stderr_txt>
]]>

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