Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:37 (2983987): wrapper (7.7.26015): starting
00:02:37 (2983987): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:02:37] Arguments: --nthreads 9
[2025-11-25 00:02:37] Threads: 9
[2025-11-25 00:02:37] Checking for CVMFS
[2025-11-25 00:02:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:02:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:02:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:39] 2.13.3.0 12601 28165 362664 153270 1 174 18734262 32935936 40868 16776704 0 132024736 99.483 169991558 34199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:02:39] CVMFS is ok
[2025-11-25 00:02:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:39] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:39] Checking for apptainer binary...
[2025-11-25 00:02:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:39] Running /usr/bin/apptainer --version
[2025-11-25 00:02:40] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:40] c6-12-27-4.aglt2.org
[2025-11-25 00:02:40] apptainer works
[2025-11-25 00:02:40] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:02:40] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:02:40] Starting ATLAS job with PandaID=6895939063
[2025-11-25 00:02:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:08:14]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:08:14] 2025-11-26 09:07:14,132 | INFO     | monitor loop #5452: job 0:6895939063 is in state 'finished'
[2025-11-26 04:08:14] 2025-11-26 09:07:14,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:08:14] 2025-11-26 09:07:14,738 | INFO     | time since job start (100993s) is within the limit (172800.0s)
[2025-11-26 04:08:14] 2025-11-26 09:07:16,656 | INFO     | monitor loop #5453: job 0:6895939063 is in state 'finished'
[2025-11-26 04:08:14] 2025-11-26 09:07:16,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:08:14] 2025-11-26 09:07:16,754 | INFO     | time since job start (100995s) is within the limit (172800.0s)
[2025-11-26 04:08:14] 2025-11-26 09:07:18,763 | INFO     | time since job start (100997s) is within the limit (172800.0s)
[2025-11-26 04:08:14] 2025-11-26 09:07:19,161 | INFO     | monitor loop #5454: job 0:6895939063 is in state 'finished'
[2025-11-26 04:08:14] 2025-11-26 09:07:19,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:08:14] 2025-11-26 09:07:21,762 | INFO     | monitor loop #5455: job 0:6895939063 is in state 'finished'
[2025-11-26 04:08:14] 2025-11-26 09:07:21,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:08:14] 2025-11-26 09:07:21,887 | INFO     | PID=2994387 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:08:14] 2025-11-26 09:07:21,887 | INFO     | .. there are 48 such processes running
[2025-11-26 04:08:14] 2025-11-26 09:07:22,888 | INFO     | time since job start (101001s) is within the limit (172800.0s)
[2025-11-26 04:08:14] 2025-11-26 09:07:24,267 | INFO     | monitor loop #5456: job 0:6895939063 is in state 'finished'
[2025-11-26 04:08:14] 2025-11-26 09:07:24,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:08:14] 2025-11-26 09:07:24,895 | INFO     | time since job start (101003s) is within the limit (172800.0s)
[2025-11-26 04:08:14] 2025-11-26 09:07:25,529 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 04:08:14] 2025-11-26 09:07:25,545 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2727.504833333334
[2025-11-26 04:08:14] 2025-11-26 09:07:25,597 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895939063/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:08:14] 2025-11-26 09:07:25,606 | INFO     | extracted standard info from prmon json
[2025-11-26 04:08:14] 2025-11-26 09:07:25,606 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:08:14] 2025-11-26 09:07:25,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:08:14] 2025-11-26 09:07:25,686 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:08:14] 2025-11-26 09:07:25,688 | INFO     | sum of square deviations: 1400472183698.473
[2025-11-26 04:08:14] 2025-11-26 09:07:25,796 | INFO     | sum of deviations: 7846234241010.937
[2025-11-26 04:08:14] 2025-11-26 09:07:25,796 | INFO     | mean x: 1764097616.105868
[2025-11-26 04:08:14] 2025-11-26 09:07:25,797 | INFO     | mean y: 2965884.7489413186
[2025-11-26 04:08:14] 2025-11-26 09:07:25,797 | INFO     | intersect: -9880502906.056948
[2025-11-26 04:08:14] 2025-11-26 09:07:25,799 | INFO     | chi2: 20.174013302073202
[2025-11-26 04:08:14] 2025-11-26 09:07:25,805 | INFO     | sum of square deviations: 1387803037530.0942
[2025-11-26 04:08:14] 2025-11-26 09:07:25,911 | INFO     | sum of deviations: 8403573548049.339
[2025-11-26 04:08:14] 2025-11-26 09:07:25,912 | INFO     | mean x: 1764097463.6152914
[2025-11-26 04:08:14] 2025-11-26 09:07:25,912 | INFO     | mean y: 2972592.177184466
[2025-11-26 04:08:14] 2025-11-26 09:07:25,912 | INFO     | intersect: -10679179255.395004
[2025-11-26 04:08:14] 2025-11-26 09:07:25,918 | INFO     | chi2: 17.12522445808394
[2025-11-26 04:08:14] 2025-11-26 09:07:25,918 | INFO     | current chi2=17.12522445808394 (change=15.112455803109581 %)
[2025-11-26 04:08:14] 2025-11-26 09:07:25,918 | INFO     | right removable region: 1647
[2025-11-26 04:08:14] 2025-11-26 09:07:25,921 | INFO     | sum of square deviations: 1387799905790.093
[2025-11-26 04:08:14] 2025-11-26 09:07:26,043 | INFO     | sum of deviations: 7148490244662.725
[2025-11-26 04:08:14] 2025-11-26 09:07:26,047 | INFO     | mean x: 1764097768.6152914
[2025-11-26 04:08:14] 2025-11-26 09:07:26,047 | INFO     | mean y: 2974281.2093446604
[2025-11-26 04:08:14] 2025-11-26 09:07:26,047 | INFO     | intersect: -9083808069.015911
[2025-11-26 04:08:14] 2025-11-26 09:07:26,049 | INFO     | chi2: 15.794136749403622
[2025-11-26 04:08:14] 2025-11-26 09:07:26,050 | INFO     | current chi2=15.794136749403622 (change=21.710487085975494 %)
[2025-11-26 04:08:14] 2025-11-26 09:07:26,050 | INFO     | left removable region: 10
[2025-11-26 04:08:14] 2025-11-26 09:07:26,056 | INFO     | sum of square deviations: 1360194242227.893
[2025-11-26 04:08:14] 2025-11-26 09:07:26,179 | INFO     | sum of deviations: 7192915136251.084
[2025-11-26 04:08:14] 2025-11-26 09:07:26,183 | INFO     | mean x: 1764097738.135614
[2025-11-26 04:08:14] 2025-11-26 09:07:26,183 | INFO     | mean y: 2990252.368967624
[2025-11-26 04:08:14] 2025-11-26 09:07:26,184 | INFO     | intersect: -9325828329.952297
[2025-11-26 04:08:14] 2025-11-26 09:07:26,185 | INFO     | chi2: 8.483512111876552
[2025-11-26 04:08:14] 2025-11-26 09:07:26,186 | INFO     | current memory leak: 5.29 B/s (using 1637 data points, chi2=8.48)
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | could have reported an average CPU frequency of 2645 MHz (58 samples)
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | ..............................
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . Timing measurements:
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . get job = 0 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . initial setup = 6 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . payload setup = 55 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . stage-in = 0 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . payload execution = 100812 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . stage-out = 8 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,192 | INFO     | . log creation = 2 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,193 | INFO     | ..............................
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | 
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | job summary report
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | --------------------------------------------------
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | PanDA job id: 6895939063
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | task id: 47556161
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | errors: (none)
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | pilot state: finished 
[2025-11-26 04:08:14] 2025-11-26 09:07:26,404 | INFO     | transexitcode: 0
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | exeerrorcode: 0
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | exeerrordiag: 
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | exitcode: 0
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | exitmsg: OK
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | cpuconsumptiontime: 277755 s
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | nevents: 1000
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | neventsw: 0
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | pid: 3031863
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | pgrp: 3031863
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | corecount: 9
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | event service: False
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | sizes: {0: 2283479, 1: 2284164, 2: 2284164, 3: 2284391, 14: 2284391, 27: 2284419, 39: 2284837, 50: 2284865, 100872: 2355205, 100873: 2355204, 100881: 2364259, 1008
[2025-11-26 04:08:14] 2025-11-26 09:07:26,405 | INFO     | --------------------------------------------------
[2025-11-26 04:08:14] 2025-11-26 09:07:26,406 | INFO     | 
[2025-11-26 04:08:14] 2025-11-26 09:07:26,406 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 04:08:14] 2025-11-26 09:07:26,529 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,531 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:08:14] 2025-11-26 09:07:26,531 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,531 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:08:14] 2025-11-26 09:07:26,531 | INFO     | job 6895939063 has completed (purged errors)
[2025-11-26 04:08:14] 2025-11-26 09:07:26,531 | INFO     | overall cleanup function is called
[2025-11-26 04:08:14] 2025-11-26 09:07:27,563 | INFO     | --- collectZombieJob: --- 10, [3031863]
[2025-11-26 04:08:14] 2025-11-26 09:07:27,563 | INFO     | zombie collector waiting for pid 3031863
[2025-11-26 04:08:14] 2025-11-26 09:07:27,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:08:14] 2025-11-26 09:07:27,564 | INFO     | collected zombie processes
[2025-11-26 04:08:14] 2025-11-26 09:07:27,564 | INFO     | will attempt to kill all subprocesses of pid=3031863
[2025-11-26 04:08:14] 2025-11-26 09:07:29,008 | INFO     | process IDs to be killed: [3031863] (in reverse order)
[2025-11-26 04:08:14] 2025-11-26 09:07:29,310 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:08:14] 2025-11-26 09:07:29,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:08:14] 2025-11-26 09:07:29,336 | INFO     | did not find any defunct processes belonging to 3031863
[2025-11-26 04:08:14] 2025-11-26 09:07:29,362 | INFO     | did not find any defunct processes belonging to 3031863
[2025-11-26 04:08:14] 2025-11-26 09:07:29,367 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:08:14] 2025-11-26 09:07:29,367 | INFO     | ready for new job
[2025-11-26 04:08:14] 2025-11-26 09:07:29,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:08:14] 2025-11-26 09:07:29,378 | INFO     | ***************************************
[2025-11-26 04:08:14] 2025-11-26 09:07:29,378 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:08:14] 2025-11-26 09:07:29,378 | INFO     | ***************************************
[2025-11-26 04:08:14] 2025-11-26 09:07:29,378 | INFO     | 
[2025-11-26 04:08:14] 2025-11-26 09:07:29,383 | INFO     | architecture information:
[2025-11-26 04:08:14] 2025-11-26 09:07:29,384 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:08:14] 2025-11-26 09:07:29,514 | INFO     | cat /etc/os-release:
[2025-11-26 04:08:14] NAME="CentOS Linux"
[2025-11-26 04:08:14] VERSION="7 (Core)"
[2025-11-26 04:08:14] ID="centos"
[2025-11-26 04:08:14] ID_LIKE="rhel fedora"
[2025-11-26 04:08:14] VERSION_ID="7"
[2025-11-26 04:08:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:08:14] ANSI_COLOR="0;31"
[2025-11-26 04:08:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:08:14] HOME_URL="https://www.centos.org/"
[2025-11-26 04:08:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:08:14] 
[2025-11-26 04:08:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:08:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:08:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:08:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:08:14] 
[2025-11-26 04:08:14] 2025-11-26 09:07:29,515 | INFO     | ***************************************
[2025-11-26 04:08:14] 2025-11-26 09:07:30,022 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 04:08:14] 2025-11-26 09:07:30,085 | INFO     | sufficient remaining disk space (88725258240 B)
[2025-11-26 04:08:14] 2025-11-26 09:07:30,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:08:14] 2025-11-26 09:07:30,086 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:08:14] 2025-11-26 09:07:30,086 | INFO     | update_server=False
[2025-11-26 04:08:14] 2025-11-26 09:07:30,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:08:14] 2025-11-26 09:07:30,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:08:14] 2025-11-26 09:07:30,248 | INFO     | all data control threads have been joined
[2025-11-26 04:08:14] 2025-11-26 09:07:30,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:08:14] 2025-11-26 09:07:30,346 | INFO     | aborting loop
[2025-11-26 04:08:14] 2025-11-26 09:07:30,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:08:14] 2025-11-26 09:07:30,853 | INFO     | all payload control threads have been joined
[2025-11-26 04:08:14] 2025-11-26 09:07:31,091 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,254 | INFO     | [data] control thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,354 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:08:14] 2025-11-26 09:07:31,780 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,808 | INFO     | all job control threads have been joined
[2025-11-26 04:08:14] 2025-11-26 09:07:31,859 | INFO     | [payload] control thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,883 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,884 | INFO     | [job] validate thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,972 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,973 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:31,973 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:32,383 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:32,445 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:32,506 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:32,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:32,814 | INFO     | [job] control thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:07:34,119 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:08:14] 2025-11-26 09:08:00,874 | INFO     | PID=2994387 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:08:14] 2025-11-26 09:08:00,874 | INFO     | .. there are 48 such processes running
[2025-11-26 04:08:14] 2025-11-26 09:08:00,875 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:08:14] 2025-11-26 09:08:00,875 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:08:14] 2025-11-26 09:08:00,875 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:08:14] 2025-11-26 09:08:07,665 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:08:14] 2025-11-26 09:08:08,863 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520673539904)>', '<ExcThread(monitor, started 140520038848256)>']
[2025-11-26 04:08:14] 2025-11-26 09:08:08,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:08:14] 2025-11-26 09:08:08,925 | INFO     | [monitor] control thread has ended
[2025-11-26 04:08:14] 2025-11-26 09:08:13,889 | INFO     | all workflow threads have been joined
[2025-11-26 04:08:14] 2025-11-26 09:08:13,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:08:14] 2025-11-26 09:08:13,890 | INFO     | traces error code: 0
[2025-11-26 04:08:14] 2025-11-26 09:08:13,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:08:14] 2025-11-26 09:08:14,181 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:08:14] 2025-11-26 09:08:14,203 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:08:14] 2025-11-26 09:08:14,216 [wrapper] pilotpid: 2994387
[2025-11-26 04:08:14] 2025-11-26 09:08:14,238 [wrapper] Pilot exit status: 0
[2025-11-26 04:08:14] 2025-11-26 09:08:14,309 [wrapper] pandaids: 6895939063
[2025-11-26 04:08:14] 2025-11-26 09:08:14,488 [wrapper] cleanup supervisor_pilot 1958748 2994388
[2025-11-26 04:08:14] 2025-11-26 09:08:14,499 [wrapper] Test setup, not cleaning
[2025-11-26 04:08:14] 2025-11-26 09:08:14,513 [wrapper] apfmon messages muted
[2025-11-26 04:08:14] 2025-11-26 09:08:14,516 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:08:14] 2025-11-26 09:08:14,533 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:08:14]  *** Error codes and diagnostics ***
[2025-11-26 04:08:14]     "exeErrorCode": 0,
[2025-11-26 04:08:14]     "exeErrorDiag": "",
[2025-11-26 04:08:14]     "pilotErrorCode": 0,
[2025-11-26 04:08:14]     "pilotErrorDiag": "",
[2025-11-26 04:08:14]  *** Listing of results directory ***
[2025-11-26 04:08:14] total 1329608
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:26 queuedata.json
[2025-11-26 04:08:14] -rwx------. 1 boincer umatlas     36292 Nov 24 12:29 runpilot2-wrapper.sh
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:08:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:02 run_atlas
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:02 job.xml
[2025-11-26 04:08:14] -rw-r--r--. 2 boincer umatlas 410044782 Nov 25 00:02 EVNT.47483658._002058.pool.root.1
[2025-11-26 04:08:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 04:08:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:02 shared
[2025-11-26 04:08:14] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:02 input.tar.gz
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:02 boinc_lockfile
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:02 pandaJob.out
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas    991801 Nov 25 00:03 agis_schedconf.cvmfs.json
[2025-11-26 04:08:14] drwx------. 5 boincer umatlas      4096 Nov 25 00:04 pilot3
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas       533 Nov 26 03:48 boinc_task_state.xml
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 04:03 init_data.xml
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas 918304309 Nov 26 04:05 HITS.47556161._000417.pool.root.1
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas      1060 Nov 26 04:06 memory_monitor_summary.json
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas   1516240 Nov 26 04:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas   2679210 Nov 26 04:06 log.47556161._000417.job.log.tgz.1
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas      8627 Nov 26 04:07 heartbeat.json
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas        95 Nov 26 04:08 pilot_heartbeat.json
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas      4824 Nov 26 04:08 pilotlog.txt
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 04:08 boinc_mmap_file
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas        29 Nov 26 04:08 wrapper_checkpoint.txt
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas  11943145 Nov 26 04:08 log.47556161._000417.job.log.1
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas       353 Nov 26 04:08 output.list
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas       620 Nov 26 04:08 runtime_log
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas  14643200 Nov 26 04:08 result.tar.gz
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 04:08 runtime_log.err
[2025-11-26 04:08:14] -rw-------. 1 boincer umatlas       667 Nov 26 04:08 nHxNDmDYph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkoLKDmFvlHbn.diag
[2025-11-26 04:08:14] -rw-r--r--. 1 boincer umatlas     21902 Nov 26 04:08 stderr.txt
[2025-11-26 04:08:15] HITS file was successfully produced:
[2025-11-26 04:08:15] -rw-------. 1 boincer umatlas 918304309 Nov 26 04:05 shared/HITS.pool.root.1
[2025-11-26 04:08:15]  *** Contents of shared directory: ***
[2025-11-26 04:08:15] total 1312124
[2025-11-26 04:08:15] -rw-r--r--. 2 boincer umatlas 410044782 Nov 25 00:02 ATLAS.root_0
[2025-11-26 04:08:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 04:08:15] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:02 input.tar.gz
[2025-11-26 04:08:15] -rw-------. 1 boincer umatlas 918304309 Nov 26 04:05 HITS.pool.root.1
[2025-11-26 04:08:15] -rw-------. 1 boincer umatlas  14643200 Nov 26 04:08 result.tar.gz
04:08:36 (2983987): run_atlas exited; CPU time 281825.583121
04:08:36 (2983987): called boinc_finish(0)

</stderr_txt>
]]>

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