Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:37 (1499136): wrapper (7.7.26015): starting
00:04:37 (1499136): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:04:37] Arguments: --nthreads 9
[2025-11-25 00:04:37] Threads: 9
[2025-11-25 00:04:37] Checking for CVMFS
[2025-11-25 00:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:04:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:04:39] 2.13.3.0 11836 26687 341080 153270 0 245 31436192 32935936 39246 16776704 0 112290120 99.536 124836030 35717 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:04:39] CVMFS is ok
[2025-11-25 00:04:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:04:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:04:39] Further information can be found at the LHC@home message board.
[2025-11-25 00:04:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:04:39] Checking for apptainer binary...
[2025-11-25 00:04:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:04:39] Running /usr/bin/apptainer --version
[2025-11-25 00:04:39] apptainer version 1.4.4-1.el9
[2025-11-25 00:04:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:04:40] c6-2-11-1.aglt2.org
[2025-11-25 00:04:40] apptainer works
[2025-11-25 00:04:40] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:04:40] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:04:40] Starting ATLAS job with PandaID=6895386415
[2025-11-25 00:04:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:08:04]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:08:04] 2025-11-26 23:07:00,634 | INFO     | PID=1515291 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:08:04] 2025-11-26 23:07:00,634 | INFO     | .. there are 53 such processes running
[2025-11-26 18:08:04] 2025-11-26 23:07:01,033 | INFO     | monitor loop #8543: job 0:6895386415 is in state 'finished'
[2025-11-26 18:08:04] 2025-11-26 23:07:01,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:08:04] 2025-11-26 23:07:01,635 | INFO     | time since job start (151297s) is within the limit (172800.0s)
[2025-11-26 18:08:04] 2025-11-26 23:07:03,539 | INFO     | monitor loop #8544: job 0:6895386415 is in state 'finished'
[2025-11-26 18:08:04] 2025-11-26 23:07:03,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:08:04] 2025-11-26 23:07:03,672 | INFO     | time since job start (151299s) is within the limit (172800.0s)
[2025-11-26 18:08:04] 2025-11-26 23:07:05,680 | INFO     | time since job start (151301s) is within the limit (172800.0s)
[2025-11-26 18:08:04] 2025-11-26 23:07:06,047 | INFO     | monitor loop #8545: job 0:6895386415 is in state 'finished'
[2025-11-26 18:08:04] 2025-11-26 23:07:06,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:08:04] 2025-11-26 23:07:06,714 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 18:08:04] 2025-11-26 23:07:06,740 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2620.6749062500003
[2025-11-26 18:08:04] 2025-11-26 23:07:06,781 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6895386415/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:08:04] 2025-11-26 23:07:06,781 | INFO     | extracted standard info from prmon json
[2025-11-26 18:08:04] 2025-11-26 23:07:06,782 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:08:04] 2025-11-26 23:07:06,782 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:08:04] 2025-11-26 23:07:06,865 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:08:04] 2025-11-26 23:07:06,869 | INFO     | sum of square deviations: 4718153157974.144
[2025-11-26 18:08:04] 2025-11-26 23:07:07,127 | INFO     | sum of deviations: 18879741589021.66
[2025-11-26 18:08:04] 2025-11-26 23:07:07,128 | INFO     | mean x: 1764122780.6811945
[2025-11-26 18:08:04] 2025-11-26 23:07:07,128 | INFO     | mean y: 3052761.1097659403
[2025-11-26 18:08:04] 2025-11-26 23:07:07,128 | INFO     | intersect: -7056103886.714724
[2025-11-26 18:08:04] 2025-11-26 23:07:07,133 | INFO     | chi2: 15.713128232174778
[2025-11-26 18:08:04] 2025-11-26 23:07:07,142 | INFO     | sum of square deviations: 4689651472047.809
[2025-11-26 18:08:04] 2025-11-26 23:07:07,725 | INFO     | time since job start (151303s) is within the limit (172800.0s)
[2025-11-26 18:08:04] 2025-11-26 23:07:07,906 | INFO     | sum of deviations: 19786166218274.254
[2025-11-26 18:08:04] 2025-11-26 23:07:07,907 | INFO     | mean x: 1764122628.1856046
[2025-11-26 18:08:04] 2025-11-26 23:07:07,914 | INFO     | mean y: 3057610.4723008494
[2025-11-26 18:08:04] 2025-11-26 23:07:07,915 | INFO     | intersect: -7439973872.517052
[2025-11-26 18:08:04] 2025-11-26 23:07:07,927 | INFO     | chi2: 12.329017438102928
[2025-11-26 18:08:04] 2025-11-26 23:07:07,927 | INFO     | current chi2=12.329017438102928 (change=21.53683686703721 %)
[2025-11-26 18:08:04] 2025-11-26 23:07:07,927 | INFO     | right removable region: 2472
[2025-11-26 18:08:04] 2025-11-26 23:07:07,939 | INFO     | sum of square deviations: 4689648174997.807
[2025-11-26 18:08:04] 2025-11-26 23:07:08,617 | INFO     | monitor loop #8546: job 0:6895386415 is in state 'finished'
[2025-11-26 18:08:04] 2025-11-26 23:07:08,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:08:04] 2025-11-26 23:07:08,887 | INFO     | sum of deviations: 17889849168087.902
[2025-11-26 18:08:04] 2025-11-26 23:07:08,887 | INFO     | mean x: 1764122933.1856046
[2025-11-26 18:08:04] 2025-11-26 23:07:08,888 | INFO     | mean y: 3058056.6712494944
[2025-11-26 18:08:04] 2025-11-26 23:07:08,888 | INFO     | intersect: -6726635091.081788
[2025-11-26 18:08:04] 2025-11-26 23:07:08,891 | INFO     | chi2: 12.158930497790056
[2025-11-26 18:08:04] 2025-11-26 23:07:08,891 | INFO     | current chi2=12.158930497790056 (change=22.619288036528694 %)
[2025-11-26 18:08:04] 2025-11-26 23:07:08,892 | INFO     | left removable region: 10
[2025-11-26 18:08:04] 2025-11-26 23:07:08,926 | INFO     | sum of square deviations: 4627346031404.315
[2025-11-26 18:08:04] 2025-11-26 23:07:09,246 | INFO     | sum of deviations: 18388950898021.977
[2025-11-26 18:08:04] 2025-11-26 23:07:09,249 | INFO     | mean x: 1764122902.6945572
[2025-11-26 18:08:04] 2025-11-26 23:07:09,250 | INFO     | mean y: 3067412.733956133
[2025-11-26 18:08:04] 2025-11-26 23:07:09,250 | INFO     | intersect: -7007510403.4837675
[2025-11-26 18:08:04] 2025-11-26 23:07:09,257 | INFO     | chi2: 6.59020271088811
[2025-11-26 18:08:04] 2025-11-26 23:07:09,258 | INFO     | current memory leak: 3.97 B/s (using 2462 data points, chi2=6.59)
[2025-11-26 18:08:04] 2025-11-26 23:07:09,264 | INFO     | could have reported an average CPU frequency of 2658 MHz (86 samples)
[2025-11-26 18:08:04] 2025-11-26 23:07:09,264 | INFO     | ..............................
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . Timing measurements:
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . get job = 0 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . initial setup = 3 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . payload setup = 35 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . stage-in = 0 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . payload execution = 151163 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . stage-out = 9 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | . log creation = 2 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,265 | INFO     | ..............................
[2025-11-26 18:08:04] 2025-11-26 23:07:09,630 | INFO     | 
[2025-11-26 18:08:04] 2025-11-26 23:07:09,646 | INFO     | job summary report
[2025-11-26 18:08:04] 2025-11-26 23:07:09,646 | INFO     | --------------------------------------------------
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | PanDA job id: 6895386415
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | task id: 47556149
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | errors: (none)
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | pilot state: finished 
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | transexitcode: 0
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | exeerrorcode: 0
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | exeerrordiag: 
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | exitcode: 0
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | exitmsg: OK
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | cpuconsumptiontime: 273430 s
[2025-11-26 18:08:04] 2025-11-26 23:07:09,647 | INFO     | nevents: 1000
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | neventsw: 0
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | pid: 1560116
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | pgrp: 1560116
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | corecount: 9
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | event service: False
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | sizes: {0: 2283482, 1: 2284338, 2: 2284338, 13: 2284366, 23: 2284684, 24: 2284712, 151204: 2378911, 151215: 2387910, 151216: 2387966, 151255: 2388212}
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | --------------------------------------------------
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | 
[2025-11-26 18:08:04] 2025-11-26 23:07:09,648 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-26 18:08:04] 2025-11-26 23:07:09,780 | INFO     | time since job start (151305s) is within the limit (172800.0s)
[2025-11-26 18:08:04] 2025-11-26 23:07:09,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,855 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,855 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,855 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,855 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,856 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:08:04] 2025-11-26 23:07:09,857 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,857 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:08:04] 2025-11-26 23:07:09,857 | INFO     | job 6895386415 has completed (purged errors)
[2025-11-26 18:08:04] 2025-11-26 23:07:09,857 | INFO     | overall cleanup function is called
[2025-11-26 18:08:04] 2025-11-26 23:07:10,934 | INFO     | --- collectZombieJob: --- 10, [1560116]
[2025-11-26 18:08:04] 2025-11-26 23:07:10,934 | INFO     | zombie collector waiting for pid 1560116
[2025-11-26 18:08:04] 2025-11-26 23:07:10,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:08:04] 2025-11-26 23:07:10,934 | INFO     | collected zombie processes
[2025-11-26 18:08:04] 2025-11-26 23:07:10,935 | INFO     | will attempt to kill all subprocesses of pid=1560116
[2025-11-26 18:08:04] 2025-11-26 23:07:11,989 | INFO     | process IDs to be killed: [1560116] (in reverse order)
[2025-11-26 18:08:04] 2025-11-26 23:07:12,406 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:08:04] 2025-11-26 23:07:12,407 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:08:04] 2025-11-26 23:07:12,445 | INFO     | did not find any defunct processes belonging to 1560116
[2025-11-26 18:08:04] 2025-11-26 23:07:12,470 | INFO     | did not find any defunct processes belonging to 1560116
[2025-11-26 18:08:04] 2025-11-26 23:07:12,476 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:08:04] 2025-11-26 23:07:12,476 | INFO     | ready for new job
[2025-11-26 18:08:04] 2025-11-26 23:07:12,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:08:04] 2025-11-26 23:07:12,486 | INFO     | ***************************************
[2025-11-26 18:08:04] 2025-11-26 23:07:12,488 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:08:04] 2025-11-26 23:07:12,488 | INFO     | ***************************************
[2025-11-26 18:08:04] 2025-11-26 23:07:12,489 | INFO     | 
[2025-11-26 18:08:04] 2025-11-26 23:07:12,494 | INFO     | architecture information:
[2025-11-26 18:08:04] 2025-11-26 23:07:12,495 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:08:04] 2025-11-26 23:07:12,600 | INFO     | cat /etc/os-release:
[2025-11-26 18:08:04] NAME="CentOS Linux"
[2025-11-26 18:08:04] VERSION="7 (Core)"
[2025-11-26 18:08:04] ID="centos"
[2025-11-26 18:08:04] ID_LIKE="rhel fedora"
[2025-11-26 18:08:04] VERSION_ID="7"
[2025-11-26 18:08:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:08:04] ANSI_COLOR="0;31"
[2025-11-26 18:08:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:08:04] HOME_URL="https://www.centos.org/"
[2025-11-26 18:08:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:08:04] 
[2025-11-26 18:08:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:08:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:08:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:08:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:08:04] 
[2025-11-26 18:08:04] 2025-11-26 23:07:12,600 | INFO     | ***************************************
[2025-11-26 18:08:04] 2025-11-26 23:07:13,103 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-26 18:08:04] 2025-11-26 23:07:13,238 | INFO     | sufficient remaining disk space (87689265152 B)
[2025-11-26 18:08:04] 2025-11-26 23:07:13,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:08:04] 2025-11-26 23:07:13,239 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:08:04] 2025-11-26 23:07:13,239 | INFO     | update_server=False
[2025-11-26 18:08:04] 2025-11-26 23:07:13,239 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:08:04] 2025-11-26 23:07:13,244 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:08:04] 2025-11-26 23:07:13,301 | INFO     | all payload control threads have been joined
[2025-11-26 18:08:04] 2025-11-26 23:07:13,301 | INFO     | all job control threads have been joined
[2025-11-26 18:08:04] 2025-11-26 23:07:13,649 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 18:08:04] 2025-11-26 23:07:13,649 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 18:08:04] 2025-11-26 23:07:13,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:08:04] 2025-11-26 23:07:13,650 | INFO     | will abort loop
[2025-11-26 18:08:04] 2025-11-26 23:07:14,177 | INFO     | all data control threads have been joined
[2025-11-26 18:08:04] 2025-11-26 23:07:14,245 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:14,309 | INFO     | [payload] control thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:14,310 | INFO     | [job] control thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:14,353 | INFO     | [job] validate thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:14,533 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:14,568 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:14,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:08:04] 2025-11-26 23:07:14,613 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:14,656 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:15,183 | INFO     | [data] control thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:15,254 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:15,276 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:15,277 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:15,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:15,596 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:15,663 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:16,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:08:04] 2025-11-26 23:07:20,631 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:08:04] 2025-11-26 23:07:44,176 | INFO     | PID=1515291 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:08:04] 2025-11-26 23:07:44,178 | INFO     | .. there are 53 such processes running
[2025-11-26 18:08:04] 2025-11-26 23:07:44,179 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:08:04] 2025-11-26 23:07:44,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:08:04] 2025-11-26 23:07:44,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:08:04] 2025-11-26 23:07:55,641 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:08:04] 2025-11-26 23:07:56,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140463084119872)>', '<ExcThread(monitor, started 140462593660672)>']
[2025-11-26 18:08:04] 2025-11-26 23:07:57,258 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:08:04] 2025-11-26 23:07:57,258 | INFO     | [monitor] control thread has ended
[2025-11-26 18:08:04] 2025-11-26 23:08:01,971 | INFO     | all workflow threads have been joined
[2025-11-26 18:08:04] 2025-11-26 23:08:01,971 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:08:04] 2025-11-26 23:08:01,971 | INFO     | traces error code: 0
[2025-11-26 18:08:04] 2025-11-26 23:08:01,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:08:04] 2025-11-26 23:08:02,359 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:08:04] 2025-11-26 23:08:02,426 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:08:04] 2025-11-26 23:08:02,452 [wrapper] pilotpid: 1515291
[2025-11-26 18:08:04] 2025-11-26 23:08:02,497 [wrapper] Pilot exit status: 0
[2025-11-26 18:08:04] 2025-11-26 23:08:02,696 [wrapper] pandaids: 6895386415
[2025-11-26 18:08:04] 2025-11-26 23:08:03,128 [wrapper] cleanup supervisor_pilot  262136 1515292
[2025-11-26 18:08:04] 2025-11-26 23:08:03,135 [wrapper] Test setup, not cleaning
[2025-11-26 18:08:04] 2025-11-26 23:08:03,149 [wrapper] apfmon messages muted
[2025-11-26 18:08:04] 2025-11-26 23:08:03,168 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:08:04] 2025-11-26 23:08:03,193 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:08:04]  *** Error codes and diagnostics ***
[2025-11-26 18:08:04]     "exeErrorCode": 0,
[2025-11-26 18:08:04]     "exeErrorDiag": "",
[2025-11-26 18:08:04]     "pilotErrorCode": 0,
[2025-11-26 18:08:04]     "pilotErrorDiag": "",
[2025-11-26 18:08:04]  *** Listing of results directory ***
[2025-11-26 18:08:04] total 1343124
[2025-11-26 18:08:04] -rwx------. 1 boincer umatlas     36292 Nov 24 00:14 runpilot2-wrapper.sh
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:14 queuedata.json
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:08:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-26 18:08:04] -rw-r--r--. 2 boincer umatlas 409594712 Nov 25 00:04 EVNT.47483658._001240.pool.root.1
[2025-11-26 18:08:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 18:08:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-26 18:08:04] -rw-r--r--. 2 boincer umatlas    590095 Nov 25 00:04 input.tar.gz
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:04 pandaJob.out
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas        57 Nov 25 00:04 setup.sh.local
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-26 18:08:04] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:41 boinc_task_state.xml
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas      6878 Nov 26 18:01 init_data.xml
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas 918609579 Nov 26 18:05 HITS.47556149._002268.pool.root.1
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas      1072 Nov 26 18:06 memory_monitor_summary.json
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas   3274653 Nov 26 18:06 log.47556149._002268.job.log.tgz.1
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas      8650 Nov 26 18:07 heartbeat.json
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas        95 Nov 26 18:07 pilot_heartbeat.json
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas      5010 Nov 26 18:08 pilotlog.txt
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:08 boinc_mmap_file
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:08 wrapper_checkpoint.txt
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas  18341365 Nov 26 18:08 log.47556149._002268.job.log.1
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas       353 Nov 26 18:08 output.list
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:08 runtime_log
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas  21637120 Nov 26 18:08 result.tar.gz
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas      9349 Nov 26 18:08 runtime_log.err
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas       670 Nov 26 18:08 CisMDmn5dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7vIKDmwwngAo.diag
[2025-11-26 18:08:04] -rw-r--r--. 1 boincer umatlas     21866 Nov 26 18:08 stderr.txt
[2025-11-26 18:08:04] HITS file was successfully produced:
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas 918609579 Nov 26 18:05 shared/HITS.pool.root.1
[2025-11-26 18:08:04]  *** Contents of shared directory: ***
[2025-11-26 18:08:04] total 1318812
[2025-11-26 18:08:04] -rw-r--r--. 2 boincer umatlas 409594712 Nov 25 00:04 ATLAS.root_0
[2025-11-26 18:08:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 18:08:04] -rw-r--r--. 2 boincer umatlas    590095 Nov 25 00:04 input.tar.gz
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas 918609579 Nov 26 18:05 HITS.pool.root.1
[2025-11-26 18:08:04] -rw-------. 1 boincer umatlas  21637120 Nov 26 18:08 result.tar.gz
18:08:05 (1499136): run_atlas exited; CPU time 280599.625883
18:08:05 (1499136): called boinc_finish(0)

</stderr_txt>
]]>

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