Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:11 (1982795): wrapper (7.7.26015): starting
00:02:11 (1982795): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:02:11] Arguments: --nthreads 8
[2025-11-25 00:02:11] Threads: 8
[2025-11-25 00:02:11] Checking for CVMFS
[2025-11-25 00:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:02:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:02:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:12] 2.13.2.0 6956 31880 443816 153270 2 413 40315531 40960000 19699 16776704 0 119050776 99.634 105926108 38193 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:02:12] CVMFS is ok
[2025-11-25 00:02:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:12] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:12] Checking for apptainer binary...
[2025-11-25 00:02:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:12] Running /usr/bin/apptainer --version
[2025-11-25 00:02:12] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:13] c-206-34.aglt2.org
[2025-11-25 00:02:13] apptainer works
[2025-11-25 00:02:13] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:02:13] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:02:13] Starting ATLAS job with PandaID=6895385183
[2025-11-25 00:02:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:31:47]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:31:47] 2025-11-27 02:30:52,757 | INFO     | monitor loop #10060: job 0:6895385183 is in state 'finished'
[2025-11-26 21:31:47] 2025-11-27 02:30:52,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:31:47] 2025-11-27 02:30:54,210 | INFO     | time since job start (163688s) is within the limit (172800.0s)
[2025-11-26 21:31:47] 2025-11-27 02:30:55,282 | INFO     | monitor loop #10061: job 0:6895385183 is in state 'finished'
[2025-11-26 21:31:47] 2025-11-27 02:30:55,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:31:47] 2025-11-27 02:30:56,217 | INFO     | time since job start (163690s) is within the limit (172800.0s)
[2025-11-26 21:31:47] 2025-11-27 02:30:57,804 | INFO     | monitor loop #10062: job 0:6895385183 is in state 'finished'
[2025-11-26 21:31:47] 2025-11-27 02:30:57,805 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:31:47] 2025-11-27 02:30:58,225 | INFO     | time since job start (163692s) is within the limit (172800.0s)
[2025-11-26 21:31:47] 2025-11-27 02:31:00,232 | INFO     | time since job start (163694s) is within the limit (172800.0s)
[2025-11-26 21:31:47] 2025-11-27 02:31:00,335 | INFO     | monitor loop #10063: job 0:6895385183 is in state 'finished'
[2025-11-26 21:31:47] 2025-11-27 02:31:00,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:31:47] 2025-11-27 02:31:01,914 | INFO     | PID=2008024 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:31:47] 2025-11-27 02:31:01,914 | INFO     | .. there are 21 such processes running
[2025-11-26 21:31:47] 2025-11-27 02:31:02,854 | INFO     | monitor loop #10064: job 0:6895385183 is in state 'finished'
[2025-11-26 21:31:47] 2025-11-27 02:31:02,855 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:31:47] 2025-11-27 02:31:02,919 | INFO     | time since job start (163696s) is within the limit (172800.0s)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,233 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:31:47] 2025-11-27 02:31:03,242 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3281.6532656249997
[2025-11-26 21:31:47] 2025-11-27 02:31:03,252 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895385183/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,252 | INFO     | extracted standard info from prmon json
[2025-11-26 21:31:47] 2025-11-27 02:31:03,253 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:31:47] 2025-11-27 02:31:03,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:31:47] 2025-11-27 02:31:03,293 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:31:47] 2025-11-27 02:31:03,295 | INFO     | sum of square deviations: 5982003041589.702
[2025-11-26 21:31:47] 2025-11-27 02:31:03,417 | INFO     | sum of deviations: 22714200403683.68
[2025-11-26 21:31:47] 2025-11-27 02:31:03,418 | INFO     | mean x: 1764128806.1595824
[2025-11-26 21:31:47] 2025-11-27 02:31:03,418 | INFO     | mean y: 2879909.725205071
[2025-11-26 21:31:47] 2025-11-27 02:31:03,418 | INFO     | intersect: -6695674899.162235
[2025-11-26 21:31:47] 2025-11-27 02:31:03,420 | INFO     | chi2: 18.083614678448516
[2025-11-26 21:31:47] 2025-11-27 02:31:03,422 | INFO     | sum of square deviations: 5948609717178.404
[2025-11-26 21:31:47] 2025-11-27 02:31:03,552 | INFO     | sum of deviations: 23665718624598.723
[2025-11-26 21:31:47] 2025-11-27 02:31:03,552 | INFO     | mean x: 1764128653.662682
[2025-11-26 21:31:47] 2025-11-27 02:31:03,552 | INFO     | mean y: 2884254.5976839745
[2025-11-26 21:31:47] 2025-11-27 02:31:03,553 | INFO     | intersect: -7015456890.663419
[2025-11-26 21:31:47] 2025-11-27 02:31:03,555 | INFO     | chi2: 14.626512423682888
[2025-11-26 21:31:47] 2025-11-27 02:31:03,555 | INFO     | current chi2=14.626512423682888 (change=19.11731872326219 %)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,555 | INFO     | right removable region: 2676
[2025-11-26 21:31:47] 2025-11-27 02:31:03,557 | INFO     | sum of square deviations: 5948607002068.403
[2025-11-26 21:31:47] 2025-11-27 02:31:03,694 | INFO     | sum of deviations: 21671537055085.89
[2025-11-26 21:31:47] 2025-11-27 02:31:03,694 | INFO     | mean x: 1764128958.662682
[2025-11-26 21:31:47] 2025-11-27 02:31:03,694 | INFO     | mean y: 2884670.9566679117
[2025-11-26 21:31:47] 2025-11-27 02:31:03,694 | INFO     | intersect: -6424063030.297572
[2025-11-26 21:31:47] 2025-11-27 02:31:03,697 | INFO     | chi2: 14.16822166063166
[2025-11-26 21:31:47] 2025-11-27 02:31:03,697 | INFO     | current chi2=14.16822166063166 (change=21.65160609445576 %)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,697 | INFO     | left removable region: 10
[2025-11-26 21:31:47] 2025-11-27 02:31:03,699 | INFO     | sum of square deviations: 5875576934953.369
[2025-11-26 21:31:47] 2025-11-27 02:31:03,835 | INFO     | sum of deviations: 21721690779614.37
[2025-11-26 21:31:47] 2025-11-27 02:31:03,835 | INFO     | mean x: 1764128928.1695423
[2025-11-26 21:31:47] 2025-11-27 02:31:03,835 | INFO     | mean y: 2894025.762565641
[2025-11-26 21:31:47] 2025-11-27 02:31:03,835 | INFO     | intersect: -6518995398.424755
[2025-11-26 21:31:47] 2025-11-27 02:31:03,837 | INFO     | chi2: 7.030312854404499
[2025-11-26 21:31:47] 2025-11-27 02:31:03,837 | INFO     | current memory leak: 3.70 B/s (using 2666 data points, chi2=7.03)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | could have reported an average CPU frequency of 3272 MHz (93 samples)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | ..............................
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . Timing measurements:
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . get job = 0 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . initial setup = 3 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . payload setup = 19 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . stage-in = 0 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . payload execution = 163604 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . stage-out = 6 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,839 | INFO     | . log creation = 1 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,840 | INFO     | ..............................
[2025-11-26 21:31:47] 2025-11-27 02:31:03,923 | INFO     | 
[2025-11-26 21:31:47] 2025-11-27 02:31:03,923 | INFO     | job summary report
[2025-11-26 21:31:47] 2025-11-27 02:31:03,923 | INFO     | --------------------------------------------------
[2025-11-26 21:31:47] 2025-11-27 02:31:03,923 | INFO     | PanDA job id: 6895385183
[2025-11-26 21:31:47] 2025-11-27 02:31:03,923 | INFO     | task id: 47556161
[2025-11-26 21:31:47] 2025-11-27 02:31:03,923 | INFO     | errors: (none)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | pilot state: finished 
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | transexitcode: 0
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | exeerrorcode: 0
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | exeerrordiag: 
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | exitcode: 0
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | exitmsg: OK
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | cpuconsumptiontime: 208088 s
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | nevents: 1000
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | neventsw: 0
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | pid: 2039144
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | pgrp: 2039144
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | corecount: 8
[2025-11-26 21:31:47] 2025-11-27 02:31:03,924 | INFO     | event service: False
[2025-11-26 21:31:47] 2025-11-27 02:31:03,925 | INFO     | sizes: {0: 2284079, 1: 2284334, 12: 2284334, 13: 2284624, 22: 2284680, 163628: 2384433, 163635: 2393432, 163636: 2393488, 163663: 2393862}
[2025-11-26 21:31:47] 2025-11-27 02:31:03,925 | INFO     | --------------------------------------------------
[2025-11-26 21:31:47] 2025-11-27 02:31:03,925 | INFO     | 
[2025-11-26 21:31:47] 2025-11-27 02:31:03,925 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 21:31:47] 2025-11-27 02:31:03,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | job 6895385183 has completed (purged errors)
[2025-11-26 21:31:47] 2025-11-27 02:31:03,947 | INFO     | overall cleanup function is called
[2025-11-26 21:31:47] 2025-11-27 02:31:04,965 | INFO     | --- collectZombieJob: --- 10, [2039144]
[2025-11-26 21:31:47] 2025-11-27 02:31:04,966 | INFO     | zombie collector waiting for pid 2039144
[2025-11-26 21:31:47] 2025-11-27 02:31:04,966 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:31:47] 2025-11-27 02:31:04,966 | INFO     | collected zombie processes
[2025-11-26 21:31:47] 2025-11-27 02:31:04,966 | INFO     | will attempt to kill all subprocesses of pid=2039144
[2025-11-26 21:31:47] 2025-11-27 02:31:05,797 | INFO     | process IDs to be killed: [2039144] (in reverse order)
[2025-11-26 21:31:47] 2025-11-27 02:31:06,271 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:31:47] 2025-11-27 02:31:06,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:31:47] 2025-11-27 02:31:06,301 | INFO     | did not find any defunct processes belonging to 2039144
[2025-11-26 21:31:47] 2025-11-27 02:31:06,335 | INFO     | did not find any defunct processes belonging to 2039144
[2025-11-26 21:31:47] 2025-11-27 02:31:06,336 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:31:47] 2025-11-27 02:31:06,337 | INFO     | ready for new job
[2025-11-26 21:31:47] 2025-11-27 02:31:06,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:31:47] 2025-11-27 02:31:06,362 | INFO     | ***************************************
[2025-11-26 21:31:47] 2025-11-27 02:31:06,362 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:31:47] 2025-11-27 02:31:06,362 | INFO     | ***************************************
[2025-11-26 21:31:47] 2025-11-27 02:31:06,362 | INFO     | 
[2025-11-26 21:31:47] 2025-11-27 02:31:06,370 | INFO     | architecture information:
[2025-11-26 21:31:47] 2025-11-27 02:31:06,378 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:31:47] 2025-11-27 02:31:06,420 | INFO     | cat /etc/os-release:
[2025-11-26 21:31:47] NAME="CentOS Linux"
[2025-11-26 21:31:47] VERSION="7 (Core)"
[2025-11-26 21:31:47] ID="centos"
[2025-11-26 21:31:47] ID_LIKE="rhel fedora"
[2025-11-26 21:31:47] VERSION_ID="7"
[2025-11-26 21:31:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:31:47] ANSI_COLOR="0;31"
[2025-11-26 21:31:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:31:47] HOME_URL="https://www.centos.org/"
[2025-11-26 21:31:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:31:47] 
[2025-11-26 21:31:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:31:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:31:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:31:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:31:47] 
[2025-11-26 21:31:47] 2025-11-27 02:31:06,420 | INFO     | ***************************************
[2025-11-26 21:31:47] 2025-11-27 02:31:06,924 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 21:31:47] 2025-11-27 02:31:07,092 | INFO     | sufficient remaining disk space (75473354752 B)
[2025-11-26 21:31:47] 2025-11-27 02:31:07,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:31:47] 2025-11-27 02:31:07,092 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:31:47] 2025-11-27 02:31:07,093 | INFO     | update_server=False
[2025-11-26 21:31:47] 2025-11-27 02:31:07,093 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:31:47] 2025-11-27 02:31:07,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:31:47] 2025-11-27 02:31:07,094 | INFO     | aborting loop
[2025-11-26 21:31:47] 2025-11-27 02:31:07,172 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:31:47] 2025-11-27 02:31:07,196 | INFO     | all payload control threads have been joined
[2025-11-26 21:31:47] 2025-11-27 02:31:07,609 | INFO     | all data control threads have been joined
[2025-11-26 21:31:47] 2025-11-27 02:31:08,099 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,102 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,114 | INFO     | all job control threads have been joined
[2025-11-26 21:31:47] 2025-11-27 02:31:08,203 | INFO     | [payload] control thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,236 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,280 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,394 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,615 | INFO     | [data] control thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,673 | INFO     | [job] validate thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,822 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:08,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:31:47] 2025-11-27 02:31:09,051 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:09,051 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:09,120 | INFO     | [job] control thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:09,178 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:09,997 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:10,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:31:47] 2025-11-27 02:31:14,406 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:31:47] 2025-11-27 02:31:37,109 | INFO     | PID=2008024 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:31:47] 2025-11-27 02:31:37,110 | INFO     | .. there are 21 such processes running
[2025-11-26 21:31:47] 2025-11-27 02:31:37,111 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:31:47] 2025-11-27 02:31:37,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:31:47] 2025-11-27 02:31:37,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:31:47] 2025-11-27 02:31:39,798 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:31:47] 2025-11-27 02:31:41,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139790079575872)>', '<ExcThread(monitor, started 139789374322432)>']
[2025-11-26 21:31:47] 2025-11-27 02:31:42,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:31:47] 2025-11-27 02:31:42,141 | INFO     | [monitor] control thread has ended
[2025-11-26 21:31:47] 2025-11-27 02:31:46,262 | INFO     | all workflow threads have been joined
[2025-11-26 21:31:47] 2025-11-27 02:31:46,262 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:31:47] 2025-11-27 02:31:46,262 | INFO     | traces error code: 0
[2025-11-26 21:31:47] 2025-11-27 02:31:46,262 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:31:47] 2025-11-27 02:31:46,597 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:31:47] 2025-11-27 02:31:46,618 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:31:47] 2025-11-27 02:31:46,636 [wrapper] pilotpid: 2008024
[2025-11-26 21:31:47] 2025-11-27 02:31:46,656 [wrapper] Pilot exit status: 0
[2025-11-26 21:31:47] 2025-11-27 02:31:46,737 [wrapper] pandaids: 6895385183
[2025-11-26 21:31:47] 2025-11-27 02:31:46,955 [wrapper] cleanup supervisor_pilot  786393 2008025
[2025-11-26 21:31:47] 2025-11-27 02:31:46,959 [wrapper] Test setup, not cleaning
[2025-11-26 21:31:47] 2025-11-27 02:31:46,961 [wrapper] apfmon messages muted
[2025-11-26 21:31:47] 2025-11-27 02:31:46,964 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:31:47] 2025-11-27 02:31:46,967 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:31:47]  *** Error codes and diagnostics ***
[2025-11-26 21:31:47]     "exeErrorCode": 0,
[2025-11-26 21:31:47]     "exeErrorDiag": "",
[2025-11-26 21:31:47]     "pilotErrorCode": 0,
[2025-11-26 21:31:47]     "pilotErrorDiag": "",
[2025-11-26 21:31:47]  *** Listing of results directory ***
[2025-11-26 21:31:47] total 1344336
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 21:31:47] -rwx------. 1 boincer umatlas     36292 Nov 24 00:12 runpilot2-wrapper.sh
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:12 queuedata.json
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:31:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:02 run_atlas
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:02 job.xml
[2025-11-26 21:31:47] -rw-r--r--. 2 boincer umatlas 407822496 Nov 25 00:02 EVNT.47483658._002019.pool.root.1
[2025-11-26 21:31:47] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:02 input.tar.gz
[2025-11-26 21:31:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 21:31:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:02 shared
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:02 boinc_lockfile
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:02 pandaJob.out
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-26 21:31:47] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas       533 Nov 26 21:19 boinc_task_state.xml
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas 915961411 Nov 26 21:28 HITS.47556161._000026.pool.root.1
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas      6902 Nov 26 21:29 init_data.xml
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas      1053 Nov 26 21:30 memory_monitor_summary.json
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:30 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas   3402947 Nov 26 21:30 log.47556161._000026.job.log.tgz.1
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas      8582 Nov 26 21:31 heartbeat.json
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas        95 Nov 26 21:31 pilot_heartbeat.json
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:31 boinc_mmap_file
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:31 wrapper_checkpoint.txt
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas      4824 Nov 26 21:31 pilotlog.txt
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas  21041399 Nov 26 21:31 log.47556161._000026.job.log.1
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas       353 Nov 26 21:31 output.list
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:31 runtime_log
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas  24463360 Nov 26 21:31 result.tar.gz
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 21:31 runtime_log.err
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas       664 Nov 26 21:31 f4XMDmA3dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmySLKDmbSr4sm.diag
[2025-11-26 21:31:47] -rw-r--r--. 1 boincer umatlas     21877 Nov 26 21:31 stderr.txt
[2025-11-26 21:31:47] HITS file was successfully produced:
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas 915961411 Nov 26 21:28 shared/HITS.pool.root.1
[2025-11-26 21:31:47]  *** Contents of shared directory: ***
[2025-11-26 21:31:47] total 1317260
[2025-11-26 21:31:47] -rw-r--r--. 2 boincer umatlas 407822496 Nov 25 00:02 ATLAS.root_0
[2025-11-26 21:31:47] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:02 input.tar.gz
[2025-11-26 21:31:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas 915961411 Nov 26 21:28 HITS.pool.root.1
[2025-11-26 21:31:47] -rw-------. 1 boincer umatlas  24463360 Nov 26 21:31 result.tar.gz
21:31:49 (1982795): run_atlas exited; CPU time 209943.816951
21:31:49 (1982795): called boinc_finish(0)

</stderr_txt>
]]>

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