Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:04 (2986870): wrapper (7.7.26015): starting
00:03:04 (2986870): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:03:04] Arguments: --nthreads 9
[2025-11-25 00:03:04] Threads: 9
[2025-11-25 00:03:04] Checking for CVMFS
[2025-11-25 00:03:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:03:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:03:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:03:06] 2.13.3.0 12601 28165 362664 153270 0 174 18734340 32935936 40551 16776704 0 132034242 99.483 169991585 34199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:03:06] CVMFS is ok
[2025-11-25 00:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:03:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:03:06] Further information can be found at the LHC@home message board.
[2025-11-25 00:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:03:06] Checking for apptainer binary...
[2025-11-25 00:03:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:03:06] Running /usr/bin/apptainer --version
[2025-11-25 00:03:06] apptainer version 1.4.4-1.el9
[2025-11-25 00:03:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:03:07] c6-12-27-4.aglt2.org
[2025-11-25 00:03:07] apptainer works
[2025-11-25 00:03:07] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:03:07] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:03:07] Starting ATLAS job with PandaID=6895386492
[2025-11-25 00:03:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:24:46]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:24:46] 2025-11-26 10:23:46,335 | INFO     | monitor loop #5718: job 0:6895386492 is in state 'finished'
[2025-11-26 05:24:46] 2025-11-26 10:23:46,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:24:46] 2025-11-26 10:23:47,785 | INFO     | time since job start (105563s) is within the limit (172800.0s)
[2025-11-26 05:24:46] 2025-11-26 10:23:48,840 | INFO     | monitor loop #5719: job 0:6895386492 is in state 'finished'
[2025-11-26 05:24:46] 2025-11-26 10:23:48,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:24:46] 2025-11-26 10:23:49,809 | INFO     | time since job start (105565s) is within the limit (172800.0s)
[2025-11-26 05:24:46] 2025-11-26 10:23:51,344 | INFO     | monitor loop #5720: job 0:6895386492 is in state 'finished'
[2025-11-26 05:24:46] 2025-11-26 10:23:51,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:24:46] 2025-11-26 10:23:51,816 | INFO     | time since job start (105567s) is within the limit (172800.0s)
[2025-11-26 05:24:46] 2025-11-26 10:23:53,829 | INFO     | time since job start (105569s) is within the limit (172800.0s)
[2025-11-26 05:24:46] 2025-11-26 10:23:53,849 | INFO     | monitor loop #5721: job 0:6895386492 is in state 'finished'
[2025-11-26 05:24:46] 2025-11-26 10:23:53,849 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:24:46] 2025-11-26 10:23:55,847 | INFO     | time since job start (105571s) is within the limit (172800.0s)
[2025-11-26 05:24:46] 2025-11-26 10:23:56,382 | INFO     | monitor loop #5722: job 0:6895386492 is in state 'finished'
[2025-11-26 05:24:46] 2025-11-26 10:23:56,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:24:46] 2025-11-26 10:23:56,673 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 05:24:46] 2025-11-26 10:23:56,703 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2749.99884375
[2025-11-26 05:24:46] 2025-11-26 10:23:56,738 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895386492/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:24:46] 2025-11-26 10:23:56,744 | INFO     | extracted standard info from prmon json
[2025-11-26 05:24:46] 2025-11-26 10:23:56,744 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:24:46] 2025-11-26 10:23:56,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:24:46] 2025-11-26 10:23:56,886 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:24:46] 2025-11-26 10:23:56,888 | INFO     | sum of square deviations: 1596993099159.6062
[2025-11-26 05:24:46] 2025-11-26 10:23:57,413 | INFO     | sum of deviations: 8432033498482.726
[2025-11-26 05:24:46] 2025-11-26 10:23:57,414 | INFO     | mean x: 1764099890.984945
[2025-11-26 05:24:46] 2025-11-26 10:23:57,414 | INFO     | mean y: 2966759.7973364214
[2025-11-26 05:24:46] 2025-11-26 10:23:57,414 | INFO     | intersect: -9311381175.257925
[2025-11-26 05:24:46] 2025-11-26 10:23:57,416 | INFO     | chi2: 26.693388572256428
[2025-11-26 05:24:46] 2025-11-26 10:23:57,423 | INFO     | sum of square deviations: 1583164416452.4548
[2025-11-26 05:24:46] 2025-11-26 10:23:57,872 | INFO     | sum of deviations: 9040055333970.629
[2025-11-26 05:24:46] 2025-11-26 10:23:57,872 | INFO     | mean x: 1764099738.5052264
[2025-11-26 05:24:46] 2025-11-26 10:23:57,873 | INFO     | mean y: 2973463.149825784
[2025-11-26 05:24:46] 2025-11-26 10:23:57,873 | INFO     | intersect: -10070243876.124105
[2025-11-26 05:24:46] 2025-11-26 10:23:57,875 | INFO     | chi2: 23.289880272338344
[2025-11-26 05:24:46] 2025-11-26 10:23:57,875 | INFO     | current chi2=23.289880272338344 (change=12.75037933346347 %)
[2025-11-26 05:24:46] 2025-11-26 10:23:57,875 | INFO     | right removable region: 1721
[2025-11-26 05:24:46] 2025-11-26 10:23:57,894 | INFO     | sum of square deviations: 1583157058022.453
[2025-11-26 05:24:46] 2025-11-26 10:23:58,289 | INFO     | sum of deviations: 7712476423264.105
[2025-11-26 05:24:46] 2025-11-26 10:23:58,289 | INFO     | mean x: 1764100043.5052264
[2025-11-26 05:24:46] 2025-11-26 10:23:58,289 | INFO     | mean y: 2974690.988385598
[2025-11-26 05:24:46] 2025-11-26 10:23:58,289 | INFO     | intersect: -8590979980.071344
[2025-11-26 05:24:46] 2025-11-26 10:23:58,292 | INFO     | chi2: 22.510325880475605
[2025-11-26 05:24:46] 2025-11-26 10:23:58,292 | INFO     | current chi2=22.510325880475605 (change=15.670781850935391 %)
[2025-11-26 05:24:46] 2025-11-26 10:23:58,292 | INFO     | left removable region: 10
[2025-11-26 05:24:46] 2025-11-26 10:23:58,295 | INFO     | sum of square deviations: 1553008307844.776
[2025-11-26 05:24:46] 2025-11-26 10:23:58,593 | INFO     | sum of deviations: 7779006579812.369
[2025-11-26 05:24:46] 2025-11-26 10:23:58,593 | INFO     | mean x: 1764100013.0496786
[2025-11-26 05:24:46] 2025-11-26 10:23:58,593 | INFO     | mean y: 2990019.289888954
[2025-11-26 05:24:46] 2025-11-26 10:23:58,593 | INFO     | intersect: -8833373276.154987
[2025-11-26 05:24:46] 2025-11-26 10:23:58,610 | INFO     | chi2: 15.099298097849834
[2025-11-26 05:24:46] 2025-11-26 10:23:58,610 | INFO     | current memory leak: 5.01 B/s (using 1711 data points, chi2=15.10)
[2025-11-26 05:24:46] 2025-11-26 10:23:58,612 | INFO     | could have reported an average CPU frequency of 2649 MHz (61 samples)
[2025-11-26 05:24:46] 2025-11-26 10:23:58,664 | INFO     | ..............................
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . Timing measurements:
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . get job = 0 s
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . initial setup = 5 s
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . payload setup = 63 s
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . stage-in = 0 s
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . payload execution = 105382 s
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . stage-out = 9 s
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | . log creation = 3 s
[2025-11-26 05:24:46] 2025-11-26 10:23:58,665 | INFO     | ..............................
[2025-11-26 05:24:46] 2025-11-26 10:23:59,222 | INFO     | 
[2025-11-26 05:24:46] 2025-11-26 10:23:59,222 | INFO     | job summary report
[2025-11-26 05:24:46] 2025-11-26 10:23:59,222 | INFO     | --------------------------------------------------
[2025-11-26 05:24:46] 2025-11-26 10:23:59,222 | INFO     | PanDA job id: 6895386492
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | task id: 47556161
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | errors: (none)
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | pilot state: finished 
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | transexitcode: 0
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | exeerrorcode: 0
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | exeerrordiag: 
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | exitcode: 0
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | exitmsg: OK
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | cpuconsumptiontime: 276902 s
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | nevents: 1000
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | neventsw: 0
[2025-11-26 05:24:46] 2025-11-26 10:23:59,223 | INFO     | pid: 3036195
[2025-11-26 05:24:46] 2025-11-26 10:23:59,224 | INFO     | pgrp: 3036195
[2025-11-26 05:24:46] 2025-11-26 10:23:59,224 | INFO     | corecount: 9
[2025-11-26 05:24:46] 2025-11-26 10:23:59,224 | INFO     | event service: False
[2025-11-26 05:24:46] 2025-11-26 10:23:59,224 | INFO     | sizes: {0: 2283478, 1: 2284163, 2: 2284191, 3: 2284362, 5: 2284390, 16: 2284446, 27: 2284602, 37: 2284892, 38: 2284920, 105449: 2358095, 105450: 2358094, 105459: 2
[2025-11-26 05:24:46] 2025-11-26 10:23:59,224 | INFO     | --------------------------------------------------
[2025-11-26 05:24:46] 2025-11-26 10:23:59,224 | INFO     | 
[2025-11-26 05:24:46] 2025-11-26 10:23:59,224 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 05:24:46] 2025-11-26 10:23:59,377 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,378 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | job 6895386492 has completed (purged errors)
[2025-11-26 05:24:46] 2025-11-26 10:23:59,379 | INFO     | overall cleanup function is called
[2025-11-26 05:24:46] 2025-11-26 10:24:00,702 | INFO     | --- collectZombieJob: --- 10, [3036195]
[2025-11-26 05:24:46] 2025-11-26 10:24:00,702 | INFO     | zombie collector waiting for pid 3036195
[2025-11-26 05:24:46] 2025-11-26 10:24:00,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:24:46] 2025-11-26 10:24:00,702 | INFO     | collected zombie processes
[2025-11-26 05:24:46] 2025-11-26 10:24:00,703 | INFO     | will attempt to kill all subprocesses of pid=3036195
[2025-11-26 05:24:46] 2025-11-26 10:24:03,338 | INFO     | PID=2998650 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:24:46] 2025-11-26 10:24:03,339 | INFO     | .. there are 51 such processes running
[2025-11-26 05:24:46] 2025-11-26 10:24:04,481 | INFO     | process IDs to be killed: [3036195] (in reverse order)
[2025-11-26 05:24:46] 2025-11-26 10:24:04,683 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:24:46] 2025-11-26 10:24:04,683 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:24:46] 2025-11-26 10:24:04,758 | INFO     | did not find any defunct processes belonging to 3036195
[2025-11-26 05:24:46] 2025-11-26 10:24:04,848 | INFO     | did not find any defunct processes belonging to 3036195
[2025-11-26 05:24:46] 2025-11-26 10:24:04,869 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:24:46] 2025-11-26 10:24:04,870 | INFO     | ready for new job
[2025-11-26 05:24:46] 2025-11-26 10:24:04,870 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:24:46] 2025-11-26 10:24:04,892 | INFO     | ***************************************
[2025-11-26 05:24:46] 2025-11-26 10:24:04,892 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:24:46] 2025-11-26 10:24:04,893 | INFO     | ***************************************
[2025-11-26 05:24:46] 2025-11-26 10:24:04,893 | INFO     | 
[2025-11-26 05:24:46] 2025-11-26 10:24:04,914 | INFO     | architecture information:
[2025-11-26 05:24:46] 2025-11-26 10:24:04,925 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:24:46] 2025-11-26 10:24:05,035 | INFO     | cat /etc/os-release:
[2025-11-26 05:24:46] NAME="CentOS Linux"
[2025-11-26 05:24:46] VERSION="7 (Core)"
[2025-11-26 05:24:46] ID="centos"
[2025-11-26 05:24:46] ID_LIKE="rhel fedora"
[2025-11-26 05:24:46] VERSION_ID="7"
[2025-11-26 05:24:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:24:46] ANSI_COLOR="0;31"
[2025-11-26 05:24:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:24:46] HOME_URL="https://www.centos.org/"
[2025-11-26 05:24:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:24:46] 
[2025-11-26 05:24:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:24:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:24:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:24:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:24:46] 
[2025-11-26 05:24:46] 2025-11-26 10:24:05,036 | INFO     | ***************************************
[2025-11-26 05:24:46] 2025-11-26 10:24:05,538 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 05:24:46] 2025-11-26 10:24:05,601 | INFO     | sufficient remaining disk space (89718259712 B)
[2025-11-26 05:24:46] 2025-11-26 10:24:05,601 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:24:46] 2025-11-26 10:24:05,601 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:24:46] 2025-11-26 10:24:05,601 | INFO     | update_server=False
[2025-11-26 05:24:46] 2025-11-26 10:24:05,602 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:24:46] 2025-11-26 10:24:05,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:24:46] 2025-11-26 10:24:05,602 | INFO     | aborting loop
[2025-11-26 05:24:46] 2025-11-26 10:24:05,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:24:46] 2025-11-26 10:24:05,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:24:46] 2025-11-26 10:24:05,864 | INFO     | all data control threads have been joined
[2025-11-26 05:24:46] 2025-11-26 10:24:05,990 | INFO     | all payload control threads have been joined
[2025-11-26 05:24:46] 2025-11-26 10:24:06,608 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:06,609 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:06,631 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:06,675 | INFO     | all job control threads have been joined
[2025-11-26 05:24:46] 2025-11-26 10:24:06,694 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:06,729 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:06,752 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:06,878 | INFO     | [data] control thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:07,011 | INFO     | [payload] control thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:07,229 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:07,416 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:07,417 | INFO     | [job] validate thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:07,423 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:07,614 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:07,685 | INFO     | [job] control thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:08,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:24:46] 2025-11-26 10:24:09,236 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:09,621 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:24:46] 2025-11-26 10:24:37,661 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:24:46] 2025-11-26 10:24:38,480 | INFO     | PID=2998650 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:24:46] 2025-11-26 10:24:38,480 | INFO     | .. there are 51 such processes running
[2025-11-26 05:24:46] 2025-11-26 10:24:38,481 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:24:46] 2025-11-26 10:24:38,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:24:46] 2025-11-26 10:24:38,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:24:46] 2025-11-26 10:24:38,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139947889223488)>', '<ExcThread(monitor, started 139947382126336)>']
[2025-11-26 05:24:46] 2025-11-26 10:24:39,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:24:46] 2025-11-26 10:24:39,499 | INFO     | [monitor] control thread has ended
[2025-11-26 05:24:46] 2025-11-26 10:24:43,917 | INFO     | all workflow threads have been joined
[2025-11-26 05:24:46] 2025-11-26 10:24:43,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:24:46] 2025-11-26 10:24:43,918 | INFO     | traces error code: 0
[2025-11-26 05:24:46] 2025-11-26 10:24:43,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:24:46] 2025-11-26 10:24:45,273 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:24:46] 2025-11-26 10:24:45,288 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:24:46] 2025-11-26 10:24:45,302 [wrapper] pilotpid: 2998650
[2025-11-26 05:24:46] 2025-11-26 10:24:45,317 [wrapper] Pilot exit status: 0
[2025-11-26 05:24:46] 2025-11-26 10:24:45,390 [wrapper] pandaids: 6895386492
[2025-11-26 05:24:46] 2025-11-26 10:24:45,638 [wrapper] cleanup supervisor_pilot 2306253 2998652
[2025-11-26 05:24:46] 2025-11-26 10:24:45,652 [wrapper] Test setup, not cleaning
[2025-11-26 05:24:46] 2025-11-26 10:24:45,675 [wrapper] apfmon messages muted
[2025-11-26 05:24:46] 2025-11-26 10:24:45,688 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:24:46] 2025-11-26 10:24:45,713 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:24:46]  *** Error codes and diagnostics ***
[2025-11-26 05:24:46]     "exeErrorCode": 0,
[2025-11-26 05:24:46]     "exeErrorDiag": "",
[2025-11-26 05:24:46]     "pilotErrorCode": 0,
[2025-11-26 05:24:46]     "pilotErrorDiag": "",
[2025-11-26 05:24:46]  *** Listing of results directory ***
[2025-11-26 05:24:46] total 1335444
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 05:24:46] -rwx------. 1 boincer umatlas     36292 Nov 24 00:22 runpilot2-wrapper.sh
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:22 queuedata.json
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:24:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:03 run_atlas
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:03 job.xml
[2025-11-26 05:24:46] -rw-r--r--. 2 boincer umatlas 410978836 Nov 25 00:03 EVNT.47483658._002021.pool.root.1
[2025-11-26 05:24:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 05:24:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:03 shared
[2025-11-26 05:24:46] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:03 input.tar.gz
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:03 boinc_lockfile
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:03 pandaJob.out
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas        57 Nov 25 00:03 setup.sh.local
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas    991801 Nov 25 00:04 agis_schedconf.cvmfs.json
[2025-11-26 05:24:46] drwx------. 5 boincer umatlas      4096 Nov 25 00:04 pilot3
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas       533 Nov 26 04:48 boinc_task_state.xml
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 05:18 init_data.xml
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas 922011459 Nov 26 05:20 HITS.47556161._000049.pool.root.1
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas      1072 Nov 26 05:23 memory_monitor_summary.json
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas   1516240 Nov 26 05:23 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas   2737444 Nov 26 05:23 log.47556161._000049.job.log.tgz.1
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas      8628 Nov 26 05:23 heartbeat.json
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas        95 Nov 26 05:24 pilot_heartbeat.json
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 05:24 boinc_mmap_file
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas        29 Nov 26 05:24 wrapper_checkpoint.txt
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas      4824 Nov 26 05:24 pilotlog.txt
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas  12553881 Nov 26 05:24 log.47556161._000049.job.log.1
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas       353 Nov 26 05:24 output.list
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas       620 Nov 26 05:24 runtime_log
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas  15308800 Nov 26 05:24 result.tar.gz
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 05:24 runtime_log.err
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas       665 Nov 26 05:24 NHHMDmCDeh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtTLKDmiJCQ6n.diag
[2025-11-26 05:24:46] -rw-r--r--. 1 boincer umatlas     21902 Nov 26 05:24 stderr.txt
[2025-11-26 05:24:46] HITS file was successfully produced:
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas 922011459 Nov 26 05:20 shared/HITS.pool.root.1
[2025-11-26 05:24:46]  *** Contents of shared directory: ***
[2025-11-26 05:24:46] total 1317308
[2025-11-26 05:24:46] -rw-r--r--. 2 boincer umatlas 410978836 Nov 25 00:03 ATLAS.root_0
[2025-11-26 05:24:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 05:24:46] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:03 input.tar.gz
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas 922011459 Nov 26 05:20 HITS.pool.root.1
[2025-11-26 05:24:46] -rw-------. 1 boincer umatlas  15308800 Nov 26 05:24 result.tar.gz
05:24:48 (2986870): run_atlas exited; CPU time 281413.806136
05:24:48 (2986870): called boinc_finish(0)

</stderr_txt>
]]>

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