Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:31 (888093): wrapper (7.7.26015): starting
00:01:31 (888093): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:01:31] Arguments: --nthreads 12
[2025-11-25 00:01:31] Threads: 12
[2025-11-25 00:01:31] Checking for CVMFS
[2025-11-25 00:01:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:33] 2.13.2.0 8445 33452 222748 153270 3 636 28390395 40960000 24446 16776704 0 70031071 99.778 36377846 35752 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:01:33] CVMFS is ok
[2025-11-25 00:01:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:33] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:33] Checking for apptainer binary...
[2025-11-25 00:01:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:33] Running /usr/bin/apptainer --version
[2025-11-25 00:01:33] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:33] c-212-2.aglt2.org
[2025-11-25 00:01:33] apptainer works
[2025-11-25 00:01:33] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:01:33] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:01:33] Starting ATLAS job with PandaID=6895369095
[2025-11-25 00:01:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:00:09 (888093): BOINC client no longer exists - exiting
05:00:09 (888093): timer handler: client dead, exiting
05:10:41 (1595183): wrapper (7.7.26015): starting
05:10:41 (1595183): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 05:10:41] Arguments: --nthreads 9
[2025-11-25 05:10:41] Threads: 9
[2025-11-25 05:10:41] This job has been restarted, cleaning up previous attempt
[2025-11-25 05:10:41] Checking for CVMFS
[2025-11-25 05:10:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:10:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:10:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:10:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:10:42] 2.13.2.0 8445 33761 203096 153278 3 18 29661383 40960000 18367 16776704 0 71016572 99.778 36636331 35695 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 05:10:42] CVMFS is ok
[2025-11-25 05:10:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:10:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:10:42] Further information can be found at the LHC@home message board.
[2025-11-25 05:10:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:10:42] Checking for apptainer binary...
[2025-11-25 05:10:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:10:42] Running /usr/bin/apptainer --version
[2025-11-25 05:10:42] apptainer version 1.4.4-1.el9
[2025-11-25 05:10:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:10:42] c-212-2.aglt2.org
[2025-11-25 05:10:42] apptainer works
[2025-11-25 05:10:42] Set ATHENA_PROC_NUMBER=9
[2025-11-25 05:10:42] Set ATHENA_CORE_NUMBER=9
[2025-11-25 05:10:42] Starting ATLAS job with PandaID=6895369095
[2025-11-25 05:10:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:12 (1595183): BOINC client no longer exists - exiting
07:20:12 (1595183): timer handler: client dead, exiting
07:28:07 (1904977): wrapper (7.7.26015): starting
07:28:07 (1904977): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 07:28:07] Arguments: --nthreads 8
[2025-11-25 07:28:07] Threads: 8
[2025-11-25 07:28:07] This job has been restarted, cleaning up previous attempt
[2025-11-25 07:28:07] Checking for CVMFS
[2025-11-25 07:28:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:28:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:28:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:28:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:28:07] 2.13.2.0 8445 33899 198056 153281 2 490 29858525 40960001 19326 16776704 0 71493437 99.780 36645500 35695 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 07:28:07] CVMFS is ok
[2025-11-25 07:28:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:28:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:28:07] Further information can be found at the LHC@home message board.
[2025-11-25 07:28:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:28:07] Checking for apptainer binary...
[2025-11-25 07:28:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:28:07] Running /usr/bin/apptainer --version
[2025-11-25 07:28:07] apptainer version 1.4.4-1.el9
[2025-11-25 07:28:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:28:07] c-212-2.aglt2.org
[2025-11-25 07:28:07] apptainer works
[2025-11-25 07:28:07] Set ATHENA_PROC_NUMBER=8
[2025-11-25 07:28:07] Set ATHENA_CORE_NUMBER=8
[2025-11-25 07:28:07] Starting ATLAS job with PandaID=6895369095
[2025-11-25 07:28:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:15:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:15:12] 2025-11-26 14:14:08,724 | INFO     | time since job start (92748s) is within the limit (172800.0s)
[2025-11-26 09:15:12] 2025-11-26 14:14:08,907 | INFO     | monitor loop #6053: job 0:6895369095 is in state 'finished'
[2025-11-26 09:15:12] 2025-11-26 14:14:08,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:15:12] 2025-11-26 14:14:10,751 | INFO     | time since job start (92750s) is within the limit (172800.0s)
[2025-11-26 09:15:12] 2025-11-26 14:14:11,413 | INFO     | monitor loop #6054: job 0:6895369095 is in state 'finished'
[2025-11-26 09:15:12] 2025-11-26 14:14:11,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:15:12] 2025-11-26 14:14:13,200 | INFO     | PID=1923389 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:15:12] 2025-11-26 14:14:13,200 | INFO     | .. there are 20 such processes running
[2025-11-26 09:15:12] 2025-11-26 14:14:13,944 | INFO     | monitor loop #6055: job 0:6895369095 is in state 'finished'
[2025-11-26 09:15:12] 2025-11-26 14:14:13,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:15:12] 2025-11-26 14:14:14,201 | INFO     | time since job start (92754s) is within the limit (172800.0s)
[2025-11-26 09:15:12] 2025-11-26 14:14:16,212 | INFO     | time since job start (92756s) is within the limit (172800.0s)
[2025-11-26 09:15:12] 2025-11-26 14:14:16,453 | INFO     | monitor loop #6056: job 0:6895369095 is in state 'finished'
[2025-11-26 09:15:12] 2025-11-26 14:14:16,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:15:12] 2025-11-26 14:14:17,766 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 09:15:12] 2025-11-26 14:14:17,796 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2972.7327812500002
[2025-11-26 09:15:12] 2025-11-26 14:14:17,888 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895369095/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:15:12] 2025-11-26 14:14:17,889 | INFO     | extracted standard info from prmon json
[2025-11-26 09:15:12] 2025-11-26 14:14:17,889 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:15:12] 2025-11-26 14:14:17,889 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:15:12] 2025-11-26 14:14:17,996 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:15:12] 2025-11-26 14:14:18,025 | INFO     | sum of square deviations: 1089005162767.787
[2025-11-26 09:15:12] 2025-11-26 14:14:18,237 | INFO     | time since job start (92758s) is within the limit (172800.0s)
[2025-11-26 09:15:12] 2025-11-26 14:14:18,283 | INFO     | sum of deviations: 31128572132164.89
[2025-11-26 09:15:12] 2025-11-26 14:14:18,283 | INFO     | mean x: 1764120074.511842
[2025-11-26 09:15:12] 2025-11-26 14:14:18,283 | INFO     | mean y: 4014458.3664473686
[2025-11-26 09:15:12] 2025-11-26 14:14:18,284 | INFO     | intersect: -50422320389.92079
[2025-11-26 09:15:12] 2025-11-26 14:14:18,285 | INFO     | chi2: 26.385827765501592
[2025-11-26 09:15:12] 2025-11-26 14:14:18,290 | INFO     | sum of square deviations: 1078295623302.2808
[2025-11-26 09:15:12] 2025-11-26 14:14:18,455 | INFO     | sum of deviations: 31929701654040.535
[2025-11-26 09:15:12] 2025-11-26 14:14:18,455 | INFO     | mean x: 1764119922.0217822
[2025-11-26 09:15:12] 2025-11-26 14:14:18,455 | INFO     | mean y: 4025865.740594059
[2025-11-26 09:15:12] 2025-11-26 14:14:18,455 | INFO     | intersect: -52233803515.03792
[2025-11-26 09:15:12] 2025-11-26 14:14:18,456 | INFO     | chi2: 21.632280156977963
[2025-11-26 09:15:12] 2025-11-26 14:14:18,457 | INFO     | current chi2=21.632280156977963 (change=18.01553337939506 %)
[2025-11-26 09:15:12] 2025-11-26 14:14:18,457 | INFO     | right removable region: 1514
[2025-11-26 09:15:12] 2025-11-26 14:14:18,470 | INFO     | sum of square deviations: 1078293015806.3568
[2025-11-26 09:15:12] 2025-11-26 14:14:18,709 | INFO     | sum of deviations: 30468120203748.01
[2025-11-26 09:15:12] 2025-11-26 14:14:18,709 | INFO     | mean x: 1764120227.020462
[2025-11-26 09:15:12] 2025-11-26 14:14:18,709 | INFO     | mean y: 4023855.6448844885
[2025-11-26 09:15:12] 2025-11-26 14:14:18,709 | INFO     | intersect: -49842749092.73444
[2025-11-26 09:15:12] 2025-11-26 14:14:18,727 | INFO     | chi2: 24.3679359628375
[2025-11-26 09:15:12] 2025-11-26 14:14:18,727 | INFO     | current chi2=24.3679359628375 (change=7.647635012998927 %)
[2025-11-26 09:15:12] 2025-11-26 14:14:18,727 | INFO     | left removable region: 10
[2025-11-26 09:15:12] 2025-11-26 14:14:18,729 | INFO     | sum of square deviations: 1054977134799.4436
[2025-11-26 09:15:12] 2025-11-26 14:14:19,013 | INFO     | sum of deviations: 31025132957400.707
[2025-11-26 09:15:12] 2025-11-26 14:14:19,013 | INFO     | mean x: 1764120196.5412233
[2025-11-26 09:15:12] 2025-11-26 14:14:19,013 | INFO     | mean y: 4043726.1748670214
[2025-11-26 09:15:12] 2025-11-26 14:14:19,013 | INFO     | intersect: -51875813993.14164
[2025-11-26 09:15:12] 2025-11-26 14:14:19,014 | INFO     | chi2: 18.51279420457697
[2025-11-26 09:15:12] 2025-11-26 14:14:19,014 | INFO     | current memory leak: 29.41 B/s (using 1504 data points, chi2=18.51)
[2025-11-26 09:15:12] 2025-11-26 14:14:19,032 | INFO     | could have reported an average CPU frequency of 3063 MHz (54 samples)
[2025-11-26 09:15:12] 2025-11-26 14:14:19,032 | INFO     | ..............................
[2025-11-26 09:15:12] 2025-11-26 14:14:19,032 | INFO     | . Timing measurements:
[2025-11-26 09:15:12] 2025-11-26 14:14:19,032 | INFO     | . get job = 0 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,033 | INFO     | . initial setup = 1 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,033 | INFO     | . payload setup = 12 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,033 | INFO     | . stage-in = 0 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,033 | INFO     | . payload execution = 92686 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,033 | INFO     | . stage-out = 11 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,033 | INFO     | . log creation = 2 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,033 | INFO     | ..............................
[2025-11-26 09:15:12] 2025-11-26 14:14:19,577 | INFO     | 
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | job summary report
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | --------------------------------------------------
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | PanDA job id: 6895369095
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | task id: 47556149
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | errors: (none)
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | pilot state: finished 
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | transexitcode: 0
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | exeerrorcode: 0
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | exeerrordiag: 
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | exitcode: 0
[2025-11-26 09:15:12] 2025-11-26 14:14:19,578 | INFO     | exitmsg: OK
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | cpuconsumptiontime: 218076 s
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | nevents: 1000
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | neventsw: 0
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | pid: 1955454
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | pgrp: 1955454
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | corecount: 8
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | event service: False
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 11: 2284582, 92703: 2353330, 92704: 2353329, 92716: 2362507, 92719: 2362563, 92743: 2362809}
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | --------------------------------------------------
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | 
[2025-11-26 09:15:12] 2025-11-26 14:14:19,579 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 09:15:12] 2025-11-26 14:14:19,704 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,704 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,704 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,704 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,704 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:15:12] 2025-11-26 14:14:19,705 | INFO     | job 6895369095 has completed (purged errors)
[2025-11-26 09:15:12] 2025-11-26 14:14:19,706 | INFO     | overall cleanup function is called
[2025-11-26 09:15:12] 2025-11-26 14:14:20,733 | INFO     | --- collectZombieJob: --- 10, [1955454]
[2025-11-26 09:15:12] 2025-11-26 14:14:20,733 | INFO     | zombie collector waiting for pid 1955454
[2025-11-26 09:15:12] 2025-11-26 14:14:20,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:15:12] 2025-11-26 14:14:20,733 | INFO     | collected zombie processes
[2025-11-26 09:15:12] 2025-11-26 14:14:20,733 | INFO     | will attempt to kill all subprocesses of pid=1955454
[2025-11-26 09:15:12] 2025-11-26 14:14:22,747 | INFO     | process IDs to be killed: [1955454] (in reverse order)
[2025-11-26 09:15:12] 2025-11-26 14:14:23,117 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:15:12] 2025-11-26 14:14:23,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:15:12] 2025-11-26 14:14:23,138 | INFO     | did not find any defunct processes belonging to 1955454
[2025-11-26 09:15:12] 2025-11-26 14:14:23,176 | INFO     | did not find any defunct processes belonging to 1955454
[2025-11-26 09:15:12] 2025-11-26 14:14:23,189 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:15:12] 2025-11-26 14:14:23,189 | INFO     | ready for new job
[2025-11-26 09:15:12] 2025-11-26 14:14:23,189 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:15:12] 2025-11-26 14:14:23,270 | INFO     | ***************************************
[2025-11-26 09:15:12] 2025-11-26 14:14:23,270 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:15:12] 2025-11-26 14:14:23,271 | INFO     | ***************************************
[2025-11-26 09:15:12] 2025-11-26 14:14:23,271 | INFO     | 
[2025-11-26 09:15:12] 2025-11-26 14:14:23,296 | INFO     | architecture information:
[2025-11-26 09:15:12] 2025-11-26 14:14:23,315 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:15:12] 2025-11-26 14:14:23,429 | INFO     | cat /etc/os-release:
[2025-11-26 09:15:12] NAME="CentOS Linux"
[2025-11-26 09:15:12] VERSION="7 (Core)"
[2025-11-26 09:15:12] ID="centos"
[2025-11-26 09:15:12] ID_LIKE="rhel fedora"
[2025-11-26 09:15:12] VERSION_ID="7"
[2025-11-26 09:15:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:15:12] ANSI_COLOR="0;31"
[2025-11-26 09:15:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:15:12] HOME_URL="https://www.centos.org/"
[2025-11-26 09:15:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:15:12] 
[2025-11-26 09:15:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:15:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:15:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:15:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:15:12] 
[2025-11-26 09:15:12] 2025-11-26 14:14:23,430 | INFO     | ***************************************
[2025-11-26 09:15:12] 2025-11-26 14:14:23,956 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 09:15:12] 2025-11-26 14:14:24,140 | INFO     | sufficient remaining disk space (120401690624 B)
[2025-11-26 09:15:12] 2025-11-26 14:14:24,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:15:12] 2025-11-26 14:14:24,141 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:15:12] 2025-11-26 14:14:24,141 | INFO     | update_server=False
[2025-11-26 09:15:12] 2025-11-26 14:14:24,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:15:12] 2025-11-26 14:14:24,154 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 09:15:12] 2025-11-26 14:14:24,154 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 09:15:12] 2025-11-26 14:14:24,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:15:12] 2025-11-26 14:14:24,154 | INFO     | will abort loop
[2025-11-26 09:15:12] 2025-11-26 14:14:24,251 | INFO     | all payload control threads have been joined
[2025-11-26 09:15:12] 2025-11-26 14:14:24,484 | INFO     | all job control threads have been joined
[2025-11-26 09:15:12] 2025-11-26 14:14:24,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:15:12] 2025-11-26 14:14:24,685 | INFO     | all data control threads have been joined
[2025-11-26 09:15:12] 2025-11-26 14:14:24,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:15:12] 2025-11-26 14:14:25,147 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:15:12] 2025-11-26 14:14:25,180 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,249 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,273 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,269 | INFO     | [payload] control thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,458 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,491 | INFO     | [job] control thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,639 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:25,692 | INFO     | [data] control thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:26,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:26,162 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:26,348 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:26,352 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:26,393 | INFO     | [job] validate thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:26,754 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:29,188 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:15:12] 2025-11-26 14:14:54,134 | INFO     | PID=1923389 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:15:12] 2025-11-26 14:14:54,134 | INFO     | .. there are 20 such processes running
[2025-11-26 09:15:12] 2025-11-26 14:14:54,134 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:15:12] 2025-11-26 14:14:54,134 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:15:12] 2025-11-26 14:14:54,134 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:15:12] 2025-11-26 14:15:01,920 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:15:12] 2025-11-26 14:15:03,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653061265216)>', '<ExcThread(monitor, started 140652570461952)>']
[2025-11-26 09:15:12] 2025-11-26 14:15:03,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:15:12] 2025-11-26 14:15:03,203 | INFO     | [monitor] control thread has ended
[2025-11-26 09:15:12] 2025-11-26 14:15:08,158 | INFO     | all workflow threads have been joined
[2025-11-26 09:15:12] 2025-11-26 14:15:08,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:15:12] 2025-11-26 14:15:08,162 | INFO     | traces error code: 0
[2025-11-26 09:15:12] 2025-11-26 14:15:08,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:15:12] 2025-11-26 14:15:10,058 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:15:12] 2025-11-26 14:15:10,062 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:15:12] 2025-11-26 14:15:10,067 [wrapper] pilotpid: 1923389
[2025-11-26 09:15:12] 2025-11-26 14:15:10,121 [wrapper] Pilot exit status: 0
[2025-11-26 09:15:12] 2025-11-26 14:15:10,360 [wrapper] pandaids: 6895369095 6895369095 6895369095
[2025-11-26 09:15:12] 2025-11-26 14:15:10,474 [wrapper] cleanup supervisor_pilot 1256340 1923390
[2025-11-26 09:15:12] 2025-11-26 14:15:10,501 [wrapper] Test setup, not cleaning
[2025-11-26 09:15:12] 2025-11-26 14:15:10,535 [wrapper] apfmon messages muted
[2025-11-26 09:15:12] 2025-11-26 14:15:10,566 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:15:12] 2025-11-26 14:15:10,604 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:15:12]  *** Error codes and diagnostics ***
[2025-11-26 09:15:12]     "exeErrorCode": 0,
[2025-11-26 09:15:12]     "exeErrorDiag": "",
[2025-11-26 09:15:12]     "pilotErrorCode": 0,
[2025-11-26 09:15:12]     "pilotErrorDiag": "",
[2025-11-26 09:15:12]  *** Listing of results directory ***
[2025-11-26 09:15:12] total 1729896
[2025-11-26 09:15:12] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-26 09:15:12] -rwx------. 1 boincer umatlas     36292 Nov 23 14:57 runpilot2-wrapper.sh
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:57 queuedata.json
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:15:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-26 09:15:12] -rw-r--r--. 3 boincer umatlas 409129898 Nov 25 00:01 EVNT.47483658._001190.pool.root.1
[2025-11-26 09:15:12] -rw-r--r--. 3 boincer umatlas 409129898 Nov 25 00:01 ATLAS.root_0
[2025-11-26 09:15:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 09:15:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-26 09:15:12] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:01 input.tar.gz
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 07:28 pandaJob.out
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas        57 Nov 25 07:28 setup.sh.local
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas    991894 Nov 25 07:28 agis_schedconf.cvmfs.json
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:56 boinc_task_state.xml
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 09:11 init_data.xml
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas 919679526 Nov 26 09:13 HITS.47556149._001769.pool.root.1
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas      1076 Nov 26 09:13 memory_monitor_summary.json
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas   2552023 Nov 26 09:13 log.47556149._001769.job.log.tgz.1
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas        96 Nov 26 09:14 pilot_heartbeat.json
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas      8638 Nov 26 09:14 heartbeat.json
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas      5011 Nov 26 09:15 pilotlog.txt
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:15 boinc_mmap_file
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas  12215005 Nov 26 09:15 log.47556149._001769.job.log.1
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:15 wrapper_checkpoint.txt
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas       353 Nov 26 09:15 output.list
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:15 runtime_log
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas  14786560 Nov 26 09:15 result.tar.gz
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas      9423 Nov 26 09:15 runtime_log.err
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas       915 Nov 26 09:15 dOjNDmHOVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXjIKDmHBd2Bo.diag
[2025-11-26 09:15:12] -rw-r--r--. 1 boincer umatlas     26398 Nov 26 09:15 stderr.txt
[2025-11-26 09:15:12] HITS file was successfully produced:
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas 919679526 Nov 26 09:13 shared/HITS.pool.root.1
[2025-11-26 09:15:12]  *** Contents of shared directory: ***
[2025-11-26 09:15:12] total 1312716
[2025-11-26 09:15:12] -rw-r--r--. 3 boincer umatlas 409129898 Nov 25 00:01 ATLAS.root_0
[2025-11-26 09:15:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 09:15:12] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:01 input.tar.gz
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas 919679526 Nov 26 09:13 HITS.pool.root.1
[2025-11-26 09:15:12] -rw-------. 1 boincer umatlas  14786560 Nov 26 09:15 result.tar.gz
09:15:13 (1904977): run_atlas exited; CPU time 218999.252785
09:15:13 (1904977): called boinc_finish(0)

</stderr_txt>
]]>

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