Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:09 (306251): wrapper (7.7.26015): starting
00:05:09 (306251): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:05:09] Arguments: --nthreads 8
[2025-11-25 00:05:09] Threads: 8
[2025-11-25 00:05:09] Checking for CVMFS
[2025-11-25 00:05:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:10] 2.13.3.0 12531 28165 439820 153270 2 346 30249396 40960000 25764 16776704 0 140947835 99.692 129480930 39857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:05:10] CVMFS is ok
[2025-11-25 00:05:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:10] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:10] Checking for apptainer binary...
[2025-11-25 00:05:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:10] Running /usr/bin/apptainer --version
[2025-11-25 00:05:10] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:10] c7-13-33.aglt2.org
[2025-11-25 00:05:10] apptainer works
[2025-11-25 00:05:10] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:05:10] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:05:11] Starting ATLAS job with PandaID=6895385469
[2025-11-25 00:05:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:34:34]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:34:34] 2025-11-25 21:33:31,207 | INFO     | monitor loop #3689: job 0:6895385469 is in state 'finished'
[2025-11-25 16:34:34] 2025-11-25 21:33:31,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:34:34] 2025-11-25 21:33:32,420 | INFO     | time since job start (59270s) is within the limit (172800.0s)
[2025-11-25 16:34:34] 2025-11-25 21:33:32,916 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 16:34:34] 2025-11-25 21:33:32,953 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.1051093750007
[2025-11-25 16:34:34] 2025-11-25 21:33:32,963 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895385469/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:34:34] 2025-11-25 21:33:32,964 | INFO     | extracted standard info from prmon json
[2025-11-25 16:34:34] 2025-11-25 21:33:32,964 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:34:34] 2025-11-25 21:33:32,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:34:34] 2025-11-25 21:33:32,978 | INFO     | fitting pss+swap vs Time
[2025-11-25 16:34:34] 2025-11-25 21:33:32,994 | INFO     | sum of square deviations: 282982365241.50616
[2025-11-25 16:34:34] 2025-11-25 21:33:33,037 | INFO     | sum of deviations: 2425824166730.564
[2025-11-25 16:34:34] 2025-11-25 21:33:33,037 | INFO     | mean x: 1764076789.2752578
[2025-11-25 16:34:34] 2025-11-25 21:33:33,037 | INFO     | mean y: 2828662.0278350515
[2025-11-25 16:34:34] 2025-11-25 21:33:33,038 | INFO     | intersect: -15119456798.19954
[2025-11-25 16:34:34] 2025-11-25 21:33:33,038 | INFO     | chi2: 8.01568024457844
[2025-11-25 16:34:34] 2025-11-25 21:33:33,039 | INFO     | sum of square deviations: 278629346490.29645
[2025-11-25 16:34:34] 2025-11-25 21:33:33,110 | INFO     | sum of deviations: 2717485819687.374
[2025-11-25 16:34:34] 2025-11-25 21:33:33,110 | INFO     | mean x: 1764076636.7896373
[2025-11-25 16:34:34] 2025-11-25 21:33:33,110 | INFO     | mean y: 2838875.9575129533
[2025-11-25 16:34:34] 2025-11-25 21:33:33,110 | INFO     | intersect: -17202287955.44962
[2025-11-25 16:34:34] 2025-11-25 21:33:33,115 | INFO     | chi2: 5.236326189214928
[2025-11-25 16:34:34] 2025-11-25 21:33:33,115 | INFO     | current chi2=5.236326189214928 (change=34.673963663201036 %)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,116 | INFO     | sum of square deviations: 274321153684.79095
[2025-11-25 16:34:34] 2025-11-25 21:33:33,168 | INFO     | sum of deviations: 2769319236890.438
[2025-11-25 16:34:34] 2025-11-25 21:33:33,177 | INFO     | mean x: 1764076484.303125
[2025-11-25 16:34:34] 2025-11-25 21:33:33,177 | INFO     | mean y: 2840705.5208333335
[2025-11-25 16:34:34] 2025-11-25 21:33:33,177 | INFO     | intersect: -17805814871.001514
[2025-11-25 16:34:34] 2025-11-25 21:33:33,178 | INFO     | chi2: 4.972580215889347
[2025-11-25 16:34:34] 2025-11-25 21:33:33,178 | INFO     | current chi2=4.972580215889347 (change=5.036851483179356 %)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,178 | INFO     | right removable region: 959
[2025-11-25 16:34:34] 2025-11-25 21:33:33,179 | INFO     | sum of square deviations: 278627704370.2965
[2025-11-25 16:34:34] 2025-11-25 21:33:33,217 | INFO     | sum of deviations: 2060289411744.175
[2025-11-25 16:34:34] 2025-11-25 21:33:33,217 | INFO     | mean x: 1764076941.7896373
[2025-11-25 16:34:34] 2025-11-25 21:33:33,217 | INFO     | mean y: 2841462.2176165804
[2025-11-25 16:34:34] 2025-11-25 21:33:33,217 | INFO     | intersect: -13041478925.395271
[2025-11-25 16:34:34] 2025-11-25 21:33:33,218 | INFO     | chi2: 4.246130832378826
[2025-11-25 16:34:34] 2025-11-25 21:33:33,218 | INFO     | current chi2=4.246130832378826 (change=47.02719291664886 %)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,219 | INFO     | sum of square deviations: 274318104303.99966
[2025-11-25 16:34:34] 2025-11-25 21:33:33,255 | INFO     | sum of deviations: 1907155418238.9575
[2025-11-25 16:34:34] 2025-11-25 21:33:33,256 | INFO     | mean x: 1764077094.3010416
[2025-11-25 16:34:34] 2025-11-25 21:33:33,256 | INFO     | mean y: 2846874.3427083334
[2025-11-25 16:34:34] 2025-11-25 21:33:33,256 | INFO     | intersect: -12261634163.55142
[2025-11-25 16:34:34] 2025-11-25 21:33:33,256 | INFO     | chi2: 3.56985946074814
[2025-11-25 16:34:34] 2025-11-25 21:33:33,257 | INFO     | current chi2=3.56985946074814 (change=15.926767175278393 %)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,257 | INFO     | left removable region: 20
[2025-11-25 16:34:34] 2025-11-25 21:33:33,258 | INFO     | sum of square deviations: 256706301872.6092
[2025-11-25 16:34:34] 2025-11-25 21:33:33,293 | INFO     | sum of deviations: 2083527067365.2134
[2025-11-25 16:34:34] 2025-11-25 21:33:33,293 | INFO     | mean x: 1764077063.8455803
[2025-11-25 16:34:34] 2025-11-25 21:33:33,293 | INFO     | mean y: 2865084.8221512246
[2025-11-25 16:34:34] 2025-11-25 21:33:33,293 | INFO     | intersect: -14315062775.25972
[2025-11-25 16:34:34] 2025-11-25 21:33:33,294 | INFO     | chi2: 0.3369630066049801
[2025-11-25 16:34:34] 2025-11-25 21:33:33,294 | INFO     | current memory leak: 8.12 B/s (using 939 data points, chi2=0.34)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,295 | INFO     | could have reported an average CPU frequency of 3283 MHz (36 samples)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,295 | INFO     | ..............................
[2025-11-25 16:34:34] 2025-11-25 21:33:33,295 | INFO     | . Timing measurements:
[2025-11-25 16:34:34] 2025-11-25 21:33:33,295 | INFO     | . get job = 0 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,299 | INFO     | . initial setup = 3 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,300 | INFO     | . payload setup = 30 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,300 | INFO     | . stage-in = 0 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,300 | INFO     | . payload execution = 59182 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,300 | INFO     | . stage-out = 5 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,300 | INFO     | . log creation = 1 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,300 | INFO     | ..............................
[2025-11-25 16:34:34] 2025-11-25 21:33:33,515 | INFO     | 
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | job summary report
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | --------------------------------------------------
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | PanDA job id: 6895385469
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | task id: 47556149
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | errors: (none)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | pilot state: finished 
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | transexitcode: 0
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | exeerrorcode: 0
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | exeerrordiag: 
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | exitcode: 0
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | exitmsg: OK
[2025-11-25 16:34:34] 2025-11-25 21:33:33,516 | INFO     | cpuconsumptiontime: 194313 s
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | nevents: 1000
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | neventsw: 0
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | pid: 348895
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | pgrp: 348895
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | corecount: 8
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | event service: False
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | sizes: {0: 2284309, 1: 2284309, 11: 2284337, 15: 2284627, 22: 2284655, 59215: 2337086, 59216: 2337213, 59222: 2346296, 59224: 2346352, 59233: 2346598}
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | --------------------------------------------------
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | 
[2025-11-25 16:34:34] 2025-11-25 21:33:33,517 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 16:34:34] 2025-11-25 21:33:33,557 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,557 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,557 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,559 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,559 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,559 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,559 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:34:34] 2025-11-25 21:33:33,559 | INFO     | job 6895385469 has completed (purged errors)
[2025-11-25 16:34:34] 2025-11-25 21:33:33,559 | INFO     | overall cleanup function is called
[2025-11-25 16:34:34] 2025-11-25 21:33:34,582 | INFO     | --- collectZombieJob: --- 10, [348895]
[2025-11-25 16:34:34] 2025-11-25 21:33:34,584 | INFO     | zombie collector waiting for pid 348895
[2025-11-25 16:34:34] 2025-11-25 21:33:34,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:34:34] 2025-11-25 21:33:34,585 | INFO     | collected zombie processes
[2025-11-25 16:34:34] 2025-11-25 21:33:34,585 | INFO     | will attempt to kill all subprocesses of pid=348895
[2025-11-25 16:34:34] 2025-11-25 21:33:35,534 | INFO     | process IDs to be killed: [348895] (in reverse order)
[2025-11-25 16:34:34] 2025-11-25 21:33:35,729 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:34:34] 2025-11-25 21:33:35,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:34:34] 2025-11-25 21:33:35,776 | INFO     | did not find any defunct processes belonging to 348895
[2025-11-25 16:34:34] 2025-11-25 21:33:35,814 | INFO     | did not find any defunct processes belonging to 348895
[2025-11-25 16:34:34] 2025-11-25 21:33:35,819 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:34:34] 2025-11-25 21:33:35,819 | INFO     | ready for new job
[2025-11-25 16:34:34] 2025-11-25 21:33:35,819 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:34:34] 2025-11-25 21:33:35,824 | INFO     | ***************************************
[2025-11-25 16:34:34] 2025-11-25 21:33:35,824 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:34:34] 2025-11-25 21:33:35,824 | INFO     | ***************************************
[2025-11-25 16:34:34] 2025-11-25 21:33:35,825 | INFO     | 
[2025-11-25 16:34:34] 2025-11-25 21:33:35,828 | INFO     | architecture information:
[2025-11-25 16:34:34] 2025-11-25 21:33:35,832 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:34:34] 2025-11-25 21:33:35,853 | INFO     | cat /etc/os-release:
[2025-11-25 16:34:34] NAME="CentOS Linux"
[2025-11-25 16:34:34] VERSION="7 (Core)"
[2025-11-25 16:34:34] ID="centos"
[2025-11-25 16:34:34] ID_LIKE="rhel fedora"
[2025-11-25 16:34:34] VERSION_ID="7"
[2025-11-25 16:34:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:34:34] ANSI_COLOR="0;31"
[2025-11-25 16:34:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:34:34] HOME_URL="https://www.centos.org/"
[2025-11-25 16:34:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:34:34] 
[2025-11-25 16:34:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:34:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:34:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:34:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:34:34] 
[2025-11-25 16:34:34] 2025-11-25 21:33:35,853 | INFO     | ***************************************
[2025-11-25 16:34:34] 2025-11-25 21:33:36,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 16:34:34] 2025-11-25 21:33:36,386 | INFO     | sufficient remaining disk space (77082918912 B)
[2025-11-25 16:34:34] 2025-11-25 21:33:36,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:34:34] 2025-11-25 21:33:36,386 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:34:34] 2025-11-25 21:33:36,386 | INFO     | update_server=False
[2025-11-25 16:34:34] 2025-11-25 21:33:36,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:34:34] 2025-11-25 21:33:37,237 | INFO     | all data control threads have been joined
[2025-11-25 16:34:34] 2025-11-25 21:33:37,239 | INFO     | all payload control threads have been joined
[2025-11-25 16:34:34] 2025-11-25 21:33:37,257 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:34:34] 2025-11-25 21:33:37,257 | INFO     | aborting loop
[2025-11-25 16:34:34] 2025-11-25 21:33:37,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:34:34] 2025-11-25 21:33:37,404 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:37,814 | INFO     | all job control threads have been joined
[2025-11-25 16:34:34] 2025-11-25 21:33:37,950 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,035 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,035 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,041 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,087 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,244 | INFO     | [data] control thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,244 | INFO     | [payload] control thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,263 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:34:34] 2025-11-25 21:33:38,780 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,780 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,825 | INFO     | [job] control thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:38,851 | INFO     | [job] validate thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:39,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:34:34] 2025-11-25 21:33:39,284 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:39,561 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:33:43,013 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:34:34] 2025-11-25 21:34:06,203 | INFO     | PID=315312 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 16:34:34] 2025-11-25 21:34:06,203 | INFO     | .. there are 42 such processes running
[2025-11-25 16:34:34] 2025-11-25 21:34:06,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:34:34] 2025-11-25 21:34:06,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:34:34] 2025-11-25 21:34:06,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:34:34] 2025-11-25 21:34:27,832 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:34:34] 2025-11-25 21:34:28,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755050624832)>', '<ExcThread(monitor, started 139754318317312)>']
[2025-11-25 16:34:34] 2025-11-25 21:34:29,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:34:34] 2025-11-25 21:34:29,399 | INFO     | [monitor] control thread has ended
[2025-11-25 16:34:34] 2025-11-25 21:34:33,722 | INFO     | all workflow threads have been joined
[2025-11-25 16:34:34] 2025-11-25 21:34:33,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:34:34] 2025-11-25 21:34:33,723 | INFO     | traces error code: 0
[2025-11-25 16:34:34] 2025-11-25 21:34:33,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:34:34] 2025-11-25 21:34:34,156 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:34:34] 2025-11-25 21:34:34,187 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:34:34] 2025-11-25 21:34:34,190 [wrapper] pilotpid: 315312
[2025-11-25 16:34:34] 2025-11-25 21:34:34,196 [wrapper] Pilot exit status: 0
[2025-11-25 16:34:34] 2025-11-25 21:34:34,223 [wrapper] pandaids: 6895385469
[2025-11-25 16:34:34] 2025-11-25 21:34:34,365 [wrapper] cleanup supervisor_pilot 4192218 315313
[2025-11-25 16:34:34] 2025-11-25 21:34:34,368 [wrapper] Test setup, not cleaning
[2025-11-25 16:34:34] 2025-11-25 21:34:34,371 [wrapper] apfmon messages muted
[2025-11-25 16:34:34] 2025-11-25 21:34:34,373 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:34:34] 2025-11-25 21:34:34,376 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:34:34]  *** Error codes and diagnostics ***
[2025-11-25 16:34:34]     "exeErrorCode": 0,
[2025-11-25 16:34:34]     "exeErrorDiag": "",
[2025-11-25 16:34:34]     "pilotErrorCode": 0,
[2025-11-25 16:34:34]     "pilotErrorDiag": "",
[2025-11-25 16:34:34]  *** Listing of results directory ***
[2025-11-25 16:34:34] total 1310052
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-25 16:34:34] -rwx------. 1 boincer umatlas     36292 Nov 24 00:18 runpilot2-wrapper.sh
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:34:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:05 run_atlas
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:05 job.xml
[2025-11-25 16:34:34] -rw-r--r--. 2 boincer umatlas 409594712 Nov 25 00:05 EVNT.47483658._001240.pool.root.1
[2025-11-25 16:34:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-25 16:34:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-25 16:34:34] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:05 input.tar.gz
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:05 pandaJob.out
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas        57 Nov 25 00:05 setup.sh.local
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-25 16:34:34] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas       531 Nov 25 16:24 boinc_task_state.xml
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas      6900 Nov 25 16:28 init_data.xml
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas 908438995 Nov 25 16:32 HITS.47556149._002262.pool.root.1
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas      1059 Nov 25 16:33 memory_monitor_summary.json
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas   1516240 Nov 25 16:33 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas   2127993 Nov 25 16:33 log.47556149._002262.job.log.tgz.1
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas        95 Nov 25 16:33 pilot_heartbeat.json
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas      8618 Nov 25 16:33 heartbeat.json
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 16:34 boinc_mmap_file
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas        28 Nov 25 16:34 wrapper_checkpoint.txt
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas      4823 Nov 25 16:34 pilotlog.txt
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas   7641770 Nov 25 16:34 log.47556149._002262.job.log.1
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas       353 Nov 25 16:34 output.list
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas       620 Nov 25 16:34 runtime_log
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas   9789440 Nov 25 16:34 result.tar.gz
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 16:34 runtime_log.err
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas       664 Nov 25 16:34 4vfNDml8dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdTLKDmvJNdBo.diag
[2025-11-25 16:34:34] -rw-r--r--. 1 boincer umatlas     21359 Nov 25 16:34 stderr.txt
[2025-11-25 16:34:34] HITS file was successfully produced:
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas 908438995 Nov 25 16:32 shared/HITS.pool.root.1
[2025-11-25 16:34:34]  *** Contents of shared directory: ***
[2025-11-25 16:34:34] total 1297308
[2025-11-25 16:34:34] -rw-r--r--. 2 boincer umatlas 409594712 Nov 25 00:05 ATLAS.root_0
[2025-11-25 16:34:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-25 16:34:34] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:05 input.tar.gz
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas 908438995 Nov 25 16:32 HITS.pool.root.1
[2025-11-25 16:34:34] -rw-------. 1 boincer umatlas   9789440 Nov 25 16:34 result.tar.gz
16:34:36 (306251): run_atlas exited; CPU time 193896.080200
16:34:36 (306251): called boinc_finish(0)

</stderr_txt>
]]>

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