Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:45 (4113848): wrapper (7.7.26015): starting
00:00:45 (4113848): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:00:45] Arguments: --nthreads 12
[2025-11-25 00:00:45] Threads: 12
[2025-11-25 00:00:45] Checking for CVMFS
[2025-11-25 00:00:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:45] 2.13.2.0 6902 33224 238344 153270 1 490 21348345 40960000 25601 16776704 0 111474719 99.601 117953538 40152 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:00:45] CVMFS is ok
[2025-11-25 00:00:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:45] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:45] Checking for apptainer binary...
[2025-11-25 00:00:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:45] Running /usr/bin/apptainer --version
[2025-11-25 00:00:45] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:45] c-212-6.aglt2.org
[2025-11-25 00:00:45] apptainer works
[2025-11-25 00:00:45] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:00:45] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:00:46] Starting ATLAS job with PandaID=6895352375
[2025-11-25 00:00:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:11 (4113848): BOINC client no longer exists - exiting
19:20:11 (4113848): timer handler: client dead, exiting
19:56:36 (3894273): wrapper (7.7.26015): starting
19:56:36 (3894273): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:56:36] Arguments: --nthreads 8
[2025-11-25 19:56:36] Threads: 8
[2025-11-25 19:56:36] This job has been restarted, cleaning up previous attempt
[2025-11-25 19:56:36] Checking for CVMFS
[2025-11-25 19:56:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:56:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:56:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:56:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:56:38] 2.13.2.0 6902 34420 233372 153303 0 554 35448269 40960000 24196 16776704 0 117633863 99.607 122255336 39916 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 19:56:38] CVMFS is ok
[2025-11-25 19:56:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:56:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:56:38] Further information can be found at the LHC@home message board.
[2025-11-25 19:56:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:56:38] Checking for apptainer binary...
[2025-11-25 19:56:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:56:38] Running /usr/bin/apptainer --version
[2025-11-25 19:56:38] apptainer version 1.4.4-1.el9
[2025-11-25 19:56:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:56:38] c-212-6.aglt2.org
[2025-11-25 19:56:38] apptainer works
[2025-11-25 19:56:38] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:56:38] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:56:38] Starting ATLAS job with PandaID=6895352375
[2025-11-25 19:56:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:36:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:36:19] 2025-11-27 13:35:16,490 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 08:36:19] 2025-11-27 13:35:16,490 | INFO     | executing command: lscpu
[2025-11-27 08:36:19] 2025-11-27 13:35:16,553 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 08:36:19] 2025-11-27 13:35:17,110 | INFO     | time since job start (131897s) is within the limit (172800.0s)
[2025-11-27 08:36:19] 2025-11-27 13:35:18,309 | INFO     | monitor loop #7591: job 0:6895352375 is in state 'finished'
[2025-11-27 08:36:19] 2025-11-27 13:35:18,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:36:19] 2025-11-27 13:35:19,115 | INFO     | time since job start (131899s) is within the limit (172800.0s)
[2025-11-27 08:36:19] 2025-11-27 13:35:20,812 | INFO     | monitor loop #7592: job 0:6895352375 is in state 'finished'
[2025-11-27 08:36:19] 2025-11-27 13:35:20,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:36:19] 2025-11-27 13:35:20,892 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:36:19] 2025-11-27 13:35:20,896 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3057.0602604166675
[2025-11-27 08:36:19] 2025-11-27 13:35:20,906 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895352375/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:36:19] 2025-11-27 13:35:20,906 | INFO     | extracted standard info from prmon json
[2025-11-27 08:36:19] 2025-11-27 13:35:20,906 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:36:19] 2025-11-27 13:35:20,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:36:19] 2025-11-27 13:35:20,922 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:36:19] 2025-11-27 13:35:20,924 | INFO     | sum of square deviations: 3133717689181.1675
[2025-11-27 08:36:19] 2025-11-27 13:35:20,980 | INFO     | sum of deviations: 10220221805735.81
[2025-11-27 08:36:19] 2025-11-27 13:35:20,980 | INFO     | mean x: 1764184571.7927845
[2025-11-27 08:36:19] 2025-11-27 13:35:20,980 | INFO     | mean y: 2886509.807585569
[2025-11-27 08:36:19] 2025-11-27 13:35:20,980 | INFO     | intersect: -5750777163.288186
[2025-11-27 08:36:19] 2025-11-27 13:35:20,981 | INFO     | chi2: 9.544441279201049
[2025-11-27 08:36:19] 2025-11-27 13:35:20,983 | INFO     | sum of square deviations: 3112028366437.3223
[2025-11-27 08:36:19] 2025-11-27 13:35:21,061 | INFO     | sum of deviations: 10980167964665.34
[2025-11-27 08:36:19] 2025-11-27 13:35:21,062 | INFO     | mean x: 1764184419.2980993
[2025-11-27 08:36:19] 2025-11-27 13:35:21,062 | INFO     | mean y: 2891852.7413073713
[2025-11-27 08:36:19] 2025-11-27 13:35:21,062 | INFO     | intersect: -6221679058.453457
[2025-11-27 08:36:19] 2025-11-27 13:35:21,063 | INFO     | chi2: 6.133124114445024
[2025-11-27 08:36:19] 2025-11-27 13:35:21,063 | INFO     | current chi2=6.133124114445024 (change=35.741402403405864 %)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,064 | INFO     | sum of square deviations: 3090439239704.4614
[2025-11-27 08:36:19] 2025-11-27 13:35:21,119 | INFO     | sum of deviations: 11392724718017.682
[2025-11-27 08:36:19] 2025-11-27 13:35:21,119 | INFO     | mean x: 1764184266.802974
[2025-11-27 08:36:19] 2025-11-27 13:35:21,119 | INFO     | mean y: 2894766.3317843867
[2025-11-27 08:36:19] 2025-11-27 13:35:21,119 | INFO     | intersect: -6500668042.903771
[2025-11-27 08:36:19] 2025-11-27 13:35:21,120 | INFO     | chi2: 4.942453724168033
[2025-11-27 08:36:19] 2025-11-27 13:35:21,121 | INFO     | time since job start (131901s) is within the limit (172800.0s)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,121 | INFO     | current chi2=4.942453724168033 (change=19.413766427336242 %)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,121 | INFO     | right removable region: 2151
[2025-11-27 08:36:19] 2025-11-27 13:35:21,122 | INFO     | sum of square deviations: 3112025342667.3193
[2025-11-27 08:36:19] 2025-11-27 13:35:21,177 | INFO     | sum of deviations: 9655880266152.65
[2025-11-27 08:36:19] 2025-11-27 13:35:21,177 | INFO     | mean x: 1764184724.2980993
[2025-11-27 08:36:19] 2025-11-27 13:35:21,178 | INFO     | mean y: 2890474.54798331
[2025-11-27 08:36:19] 2025-11-27 13:35:21,178 | INFO     | intersect: -5470958414.676508
[2025-11-27 08:36:19] 2025-11-27 13:35:21,179 | INFO     | chi2: 7.366380274483766
[2025-11-27 08:36:19] 2025-11-27 13:35:21,180 | INFO     | current chi2=7.366380274483766 (change=22.820204357730674 %)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,180 | INFO     | left removable region: 10
[2025-11-27 08:36:19] 2025-11-27 13:35:21,181 | INFO     | sum of square deviations: 3043290718533.3076
[2025-11-27 08:36:19] 2025-11-27 13:35:21,260 | INFO     | sum of deviations: 10737473515968.77
[2025-11-27 08:36:19] 2025-11-27 13:35:21,260 | INFO     | mean x: 1764184541.3092012
[2025-11-27 08:36:19] 2025-11-27 13:35:21,260 | INFO     | mean y: 2900481.6725829053
[2025-11-27 08:36:19] 2025-11-27 13:35:21,260 | INFO     | intersect: -6221573793.568019
[2025-11-27 08:36:19] 2025-11-27 13:35:21,261 | INFO     | chi2: 2.4996437932642053
[2025-11-27 08:36:19] 2025-11-27 13:35:21,261 | INFO     | current memory leak: 3.53 B/s (using 2141 data points, chi2=2.50)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | could have reported an average CPU frequency of 3066 MHz (75 samples)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | ..............................
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . Timing measurements:
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . get job = 0 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . initial setup = 2 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . payload setup = 10 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . stage-in = 0 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . payload execution = 131853 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . stage-out = 3 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | . log creation = 0 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,263 | INFO     | ..............................
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | 
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | job summary report
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | --------------------------------------------------
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | PanDA job id: 6895352375
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | task id: 47556137
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | errors: (none)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | pilot state: finished 
[2025-11-27 08:36:19] 2025-11-27 13:35:21,311 | INFO     | transexitcode: 0
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | exeerrorcode: 0
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | exeerrordiag: 
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | exitcode: 0
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | exitmsg: OK
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | cpuconsumptiontime: 218827 s
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | nevents: 1000
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | neventsw: 0
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | pid: 3905678
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | pgrp: 3905678
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | corecount: 8
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | event service: False
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | sizes: {0: 2284264, 1: 2284292, 10: 2284554, 11: 2284582, 131868: 2371077, 131872: 2380071, 131874: 2380255, 131880: 2380501}
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | --------------------------------------------------
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | 
[2025-11-27 08:36:19] 2025-11-27 13:35:21,312 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 08:36:19] 2025-11-27 13:35:21,329 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,329 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,329 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,330 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,331 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:36:19] 2025-11-27 13:35:21,331 | INFO     | job 6895352375 has completed (purged errors)
[2025-11-27 08:36:19] 2025-11-27 13:35:21,331 | INFO     | overall cleanup function is called
[2025-11-27 08:36:19] 2025-11-27 13:35:22,345 | INFO     | --- collectZombieJob: --- 10, [3905678]
[2025-11-27 08:36:19] 2025-11-27 13:35:22,345 | INFO     | zombie collector waiting for pid 3905678
[2025-11-27 08:36:19] 2025-11-27 13:35:22,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:36:19] 2025-11-27 13:35:22,345 | INFO     | collected zombie processes
[2025-11-27 08:36:19] 2025-11-27 13:35:22,345 | INFO     | will attempt to kill all subprocesses of pid=3905678
[2025-11-27 08:36:19] 2025-11-27 13:35:22,761 | INFO     | process IDs to be killed: [3905678] (in reverse order)
[2025-11-27 08:36:19] 2025-11-27 13:35:22,899 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:36:19] 2025-11-27 13:35:22,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:36:19] 2025-11-27 13:35:22,917 | INFO     | did not find any defunct processes belonging to 3905678
[2025-11-27 08:36:19] 2025-11-27 13:35:22,935 | INFO     | did not find any defunct processes belonging to 3905678
[2025-11-27 08:36:19] 2025-11-27 13:35:22,936 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:36:19] 2025-11-27 13:35:22,936 | INFO     | ready for new job
[2025-11-27 08:36:19] 2025-11-27 13:35:22,936 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:36:19] 2025-11-27 13:35:22,946 | INFO     | ***************************************
[2025-11-27 08:36:19] 2025-11-27 13:35:22,946 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:36:19] 2025-11-27 13:35:22,946 | INFO     | ***************************************
[2025-11-27 08:36:19] 2025-11-27 13:35:22,946 | INFO     | 
[2025-11-27 08:36:19] 2025-11-27 13:35:22,952 | INFO     | architecture information:
[2025-11-27 08:36:19] 2025-11-27 13:35:22,953 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:36:19] 2025-11-27 13:35:22,968 | INFO     | cat /etc/os-release:
[2025-11-27 08:36:19] NAME="CentOS Linux"
[2025-11-27 08:36:19] VERSION="7 (Core)"
[2025-11-27 08:36:19] ID="centos"
[2025-11-27 08:36:19] ID_LIKE="rhel fedora"
[2025-11-27 08:36:19] VERSION_ID="7"
[2025-11-27 08:36:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:36:19] ANSI_COLOR="0;31"
[2025-11-27 08:36:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:36:19] HOME_URL="https://www.centos.org/"
[2025-11-27 08:36:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:36:19] 
[2025-11-27 08:36:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:36:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:36:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:36:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:36:19] 
[2025-11-27 08:36:19] 2025-11-27 13:35:22,968 | INFO     | ***************************************
[2025-11-27 08:36:19] 2025-11-27 13:35:23,471 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 08:36:19] 2025-11-27 13:35:23,494 | INFO     | sufficient remaining disk space (122310098944 B)
[2025-11-27 08:36:19] 2025-11-27 13:35:23,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:36:19] 2025-11-27 13:35:23,495 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:36:19] 2025-11-27 13:35:23,495 | INFO     | update_server=False
[2025-11-27 08:36:19] 2025-11-27 13:35:23,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:36:19] 2025-11-27 13:35:23,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:36:19] 2025-11-27 13:35:23,763 | INFO     | all data control threads have been joined
[2025-11-27 08:36:19] 2025-11-27 13:35:24,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:36:19] 2025-11-27 13:35:24,320 | INFO     | aborting loop
[2025-11-27 08:36:19] 2025-11-27 13:35:24,351 | INFO     | all payload control threads have been joined
[2025-11-27 08:36:19] 2025-11-27 13:35:24,500 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:24,768 | INFO     | [data] control thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:24,772 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:24,924 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:24,997 | INFO     | all job control threads have been joined
[2025-11-27 08:36:19] 2025-11-27 13:35:25,014 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,060 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,197 | INFO     | [job] validate thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,325 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,356 | INFO     | [payload] control thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,630 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,766 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:25,858 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:26,002 | INFO     | [job] control thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:26,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:36:19] 2025-11-27 13:35:26,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:36:19] 2025-11-27 13:35:27,323 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:30,011 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:36:19] 2025-11-27 13:35:54,680 | INFO     | PID=3897975 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:36:19] 2025-11-27 13:35:54,680 | INFO     | .. there are 24 such processes running
[2025-11-27 08:36:19] 2025-11-27 13:35:54,681 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:36:19] 2025-11-27 13:35:54,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:36:19] 2025-11-27 13:35:54,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:36:19] 2025-11-27 13:35:56,347 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:36:19] 2025-11-27 13:35:57,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190668719936)>', '<ExcThread(monitor, started 140190316214016)>']
[2025-11-27 08:36:19] 2025-11-27 13:35:57,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:36:19] 2025-11-27 13:35:57,694 | INFO     | [monitor] control thread has ended
[2025-11-27 08:36:19] 2025-11-27 13:36:02,177 | INFO     | all workflow threads have been joined
[2025-11-27 08:36:19] 2025-11-27 13:36:02,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:36:19] 2025-11-27 13:36:02,178 | INFO     | traces error code: 0
[2025-11-27 08:36:19] 2025-11-27 13:36:02,179 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:36:19] 2025-11-27 13:36:02,589 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:36:19] 2025-11-27 13:36:02,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:36:19] 2025-11-27 13:36:02,596 [wrapper] pilotpid: 3897975
[2025-11-27 08:36:19] 2025-11-27 13:36:02,598 [wrapper] Pilot exit status: 0
[2025-11-27 08:36:19] 2025-11-27 13:36:02,606 [wrapper] pandaids: 6895352375 6895352375
[2025-11-27 08:36:19] 2025-11-27 13:36:02,667 [wrapper] cleanup supervisor_pilot 2399981 3897976
[2025-11-27 08:36:19] 2025-11-27 13:36:02,670 [wrapper] Test setup, not cleaning
[2025-11-27 08:36:19] 2025-11-27 13:36:02,672 [wrapper] apfmon messages muted
[2025-11-27 08:36:19] 2025-11-27 13:36:02,675 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:36:19] 2025-11-27 13:36:02,677 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:36:19]  *** Error codes and diagnostics ***
[2025-11-27 08:36:19]     "exeErrorCode": 0,
[2025-11-27 08:36:19]     "exeErrorDiag": "",
[2025-11-27 08:36:19]     "pilotErrorCode": 0,
[2025-11-27 08:36:19]     "pilotErrorDiag": "",
[2025-11-27 08:36:19]  *** Listing of results directory ***
[2025-11-27 08:36:19] total 1745396
[2025-11-27 08:36:19] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 22:01 pilot3.tar.gz
[2025-11-27 08:36:19] -rwx------. 1 boincer umatlas     36292 Nov 22 22:15 runpilot2-wrapper.sh
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 22:15 queuedata.json
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:36:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-27 08:36:19] -rw-r--r--. 3 boincer umatlas 410506172 Nov 25 00:00 EVNT.47483658._000591.pool.root.1
[2025-11-27 08:36:19] -rw-r--r--. 3 boincer umatlas 410506172 Nov 25 00:00 ATLAS.root_0
[2025-11-27 08:36:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-27 08:36:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-27 08:36:19] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:00 input.tar.gz
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 19:56 pandaJob.out
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas        57 Nov 25 19:56 setup.sh.local
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas    991877 Nov 25 19:56 agis_schedconf.cvmfs.json
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:00 boinc_task_state.xml
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas 924028048 Nov 27 08:34 HITS.47556137._005864.pool.root.1
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas      1065 Nov 27 08:35 memory_monitor_summary.json
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas   2938766 Nov 27 08:35 log.47556137._005864.job.log.tgz.1
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas      8604 Nov 27 08:35 heartbeat.json
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas        97 Nov 27 08:35 pilot_heartbeat.json
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas      4825 Nov 27 08:36 pilotlog.txt
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas  16223060 Nov 27 08:36 log.47556137._005864.job.log.1
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas       353 Nov 27 08:36 output.list
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:36 runtime_log
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas  19179520 Nov 27 08:36 result.tar.gz
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas       792 Nov 27 08:36 ynpLDmUkFh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhZKKDm1iUzqm.diag
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas      9424 Nov 27 08:36 runtime_log.err
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 08:36 init_data.xml
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas        29 Nov 27 08:36 wrapper_checkpoint.txt
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 08:36 boinc_mmap_file
[2025-11-27 08:36:19] -rw-r--r--. 1 boincer umatlas     23885 Nov 27 08:36 stderr.txt
[2025-11-27 08:36:19] HITS file was successfully produced:
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas 924028048 Nov 27 08:34 shared/HITS.pool.root.1
[2025-11-27 08:36:19]  *** Contents of shared directory: ***
[2025-11-27 08:36:19] total 1322592
[2025-11-27 08:36:19] -rw-r--r--. 3 boincer umatlas 410506172 Nov 25 00:00 ATLAS.root_0
[2025-11-27 08:36:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-27 08:36:19] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:00 input.tar.gz
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas 924028048 Nov 27 08:34 HITS.pool.root.1
[2025-11-27 08:36:19] -rw-------. 1 boincer umatlas  19179520 Nov 27 08:36 result.tar.gz
08:36:21 (3894273): run_atlas exited; CPU time 221039.276739
08:36:21 (3894273): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN