Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:27:22 (3036763): wrapper (7.7.26015): starting
21:27:22 (3036763): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 21:27:22] Arguments: --nthreads 12
[2025-11-24 21:27:22] Threads: 12
[2025-11-24 21:27:22] Checking for CVMFS
[2025-11-24 21:27:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:27:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:27:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:27:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:27:23] 2.11.5.0 238152 26469 329472 153272 2 419 41492262 45568001 14709 130560 0 257138698 99.783 168338850 19775 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-24 21:27:23] CVMFS is ok
[2025-11-24 21:27:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 21:27:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 21:27:23] Further information can be found at the LHC@home message board.
[2025-11-24 21:27:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:27:23] Checking for apptainer binary...
[2025-11-24 21:27:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:27:23] Running /usr/bin/apptainer --version
[2025-11-24 21:27:23] apptainer version 1.4.1-1.el9
[2025-11-24 21:27:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:27:24] wns0054.triumf.lcg
[2025-11-24 21:27:24] apptainer works
[2025-11-24 21:27:24] Set ATHENA_PROC_NUMBER=12
[2025-11-24 21:27:24] Set ATHENA_CORE_NUMBER=12
[2025-11-24 21:27:24] Starting ATLAS job with PandaID=6895939051
[2025-11-24 21:27:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:32:45]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 21:32:45] 2025-11-25 05:32:02,231 | WARNING  | wrong length of table data, x=[1764048500.0, 1764048561.0], y=[1982.0, 488466.0] (must be same and length>=4)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,231 | INFO     | could have reported an average CPU frequency of 2558 MHz (4 samples)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | ..............................
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . Timing measurements:
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . get job = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . initial setup = 3 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . payload setup = 12 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . stage-in = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . payload execution = 100 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . stage-out = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . log creation = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | ..............................
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895939051/pilotlog.txt
[2025-11-24 21:32:45] 2025-11-25 05:32:02,266 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 21:32:45] - Log from pilotlog.txt -
[2025-11-24 21:32:45] 2025-11-25 05:32:02,229 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895939051/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | INFO     | extracted standard info from prmon json
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 21:32:45] 2025-11-25 05:32:02,231 | WARNING  | wrong length of table data, x=[1764048500.0, 1764048561.0], y=[1982.0, 488466.0] (must be same and length>=4)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,231 | INFO     | could have reported an average CPU frequency of 2558 MHz (4 samples)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | ..............................
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . Timing measurements:
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . get job = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . initial setup = 3 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . payload setup = 12 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . stage-in = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . payload execution = 100 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . stage-out = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . log creation = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | ..............................
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895939051/pilotlog.txt
[2025-11-24 21:32:45] 2025-11-25 05:32:02,267 | WARNING  | 
[2025-11-24 21:32:45] [begin log extracts]
[2025-11-24 21:32:45] - Log from pilotlog.txt -
[2025-11-24 21:32:45] 2025-11-25 05:32:02,229 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895939051/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | INFO     | extracted standard info from prmon json
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 21:32:45] 2025-11-25 05:32:02,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 21:32:45] 2025-11-25 05:32:02,231 | WARNING  | wrong length of table data, x=[1764048500.0, 1764048561.0], y=[1982.0, 488466.0] (must be same and length>=4)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,231 | INFO     | could have reported an average CPU frequency of 2558 MHz (4 samples)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | ..............................
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . Timing measurements:
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . get job = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . initial setup = 3 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . payload setup = 12 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . stage-in = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . payload execution = 100 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . stage-out = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | . log creation = 0 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | ..............................
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 21:32:45] 2025-11-25 05:32:02,232 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895939051/pilotlog.txt
[2025-11-24 21:32:45] [end log extracts]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,267 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,267 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 21:32:45] 2025-11-25 05:32:02,330 | INFO     | 
[2025-11-24 21:32:45] 2025-11-25 05:32:02,330 | INFO     | job summary report
[2025-11-24 21:32:45] 2025-11-25 05:32:02,330 | INFO     | --------------------------------------------------
[2025-11-24 21:32:45] 2025-11-25 05:32:02,330 | INFO     | PanDA job id: 6895939051
[2025-11-24 21:32:45] 2025-11-25 05:32:02,330 | INFO     | task id: 47556149
[2025-11-24 21:32:45] 2025-11-25 05:32:02,330 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 21:29:46,596 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 21:32:45] 2025-11-25 05:32:02,330 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | pilot state: failed 
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | transexitcode: 65
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | exeerrorcode: 65
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | exitcode: 65
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | cpuconsumptiontime: 46 s
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | nevents: 0
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | neventsw: 0
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | pid: 3050930
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | pgrp: 3050930
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | corecount: 12
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | event service: False
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | sizes: {0: 2284306, 6: 2284568, 11: 2284596, 116: 2310021, 117: 2314311, 118: 2314339, 244: 2314661}
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | --------------------------------------------------
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | 
[2025-11-24 21:32:45] 2025-11-25 05:32:02,331 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 21:32:45] 2025-11-25 05:32:02,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:32:45] 2025-11-25 05:32:02,427 | INFO     | job 6895939051 has completed (purged errors)
[2025-11-24 21:32:45] 2025-11-25 05:32:02,427 | INFO     | overall cleanup function is called
[2025-11-24 21:32:45] 2025-11-25 05:32:03,441 | INFO     | --- collectZombieJob: --- 10, [3050930]
[2025-11-24 21:32:45] 2025-11-25 05:32:03,441 | INFO     | zombie collector waiting for pid 3050930
[2025-11-24 21:32:45] 2025-11-25 05:32:03,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:32:45] 2025-11-25 05:32:03,441 | INFO     | collected zombie processes
[2025-11-24 21:32:45] 2025-11-25 05:32:03,441 | INFO     | will attempt to kill all subprocesses of pid=3050930
[2025-11-24 21:32:45] 2025-11-25 05:32:03,599 | INFO     | process IDs to be killed: [3050930] (in reverse order)
[2025-11-24 21:32:45] 2025-11-25 05:32:03,661 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:32:45] 2025-11-25 05:32:03,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:32:45] 2025-11-25 05:32:03,669 | INFO     | did not find any defunct processes belonging to 3050930
[2025-11-24 21:32:45] 2025-11-25 05:32:03,675 | INFO     | did not find any defunct processes belonging to 3050930
[2025-11-24 21:32:45] 2025-11-25 05:32:03,676 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:32:45] 2025-11-25 05:32:03,676 | INFO     | ready for new job
[2025-11-24 21:32:45] 2025-11-25 05:32:03,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:32:45] 2025-11-25 05:32:03,677 | INFO     | ***************************************
[2025-11-24 21:32:45] 2025-11-25 05:32:03,677 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:32:45] 2025-11-25 05:32:03,677 | INFO     | ***************************************
[2025-11-24 21:32:45] 2025-11-25 05:32:03,678 | INFO     | 
[2025-11-24 21:32:45] 2025-11-25 05:32:03,679 | INFO     | architecture information:
[2025-11-24 21:32:45] 2025-11-25 05:32:03,680 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:32:45] 2025-11-25 05:32:03,691 | INFO     | cat /etc/os-release:
[2025-11-24 21:32:45] NAME="CentOS Linux"
[2025-11-24 21:32:45] VERSION="7 (Core)"
[2025-11-24 21:32:45] ID="centos"
[2025-11-24 21:32:45] ID_LIKE="rhel fedora"
[2025-11-24 21:32:45] VERSION_ID="7"
[2025-11-24 21:32:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:32:45] ANSI_COLOR="0;31"
[2025-11-24 21:32:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:32:45] HOME_URL="https://www.centos.org/"
[2025-11-24 21:32:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:32:45] 
[2025-11-24 21:32:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:32:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:32:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:32:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:32:45] 
[2025-11-24 21:32:45] 2025-11-25 05:32:03,692 | INFO     | ***************************************
[2025-11-24 21:32:45] 2025-11-25 05:32:04,195 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 21:32:45] 2025-11-25 05:32:04,209 | INFO     | sufficient remaining disk space (1703301611520 B)
[2025-11-24 21:32:45] 2025-11-25 05:32:04,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:32:45] 2025-11-25 05:32:04,210 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:32:45] 2025-11-25 05:32:04,210 | INFO     | update_server=False
[2025-11-24 21:32:45] 2025-11-25 05:32:04,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:32:45] 2025-11-25 05:32:04,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:32:45] 2025-11-25 05:32:04,210 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:32:45] 2025-11-25 05:32:04,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:32:45] 2025-11-25 05:32:04,421 | INFO     | all payload control threads have been joined
[2025-11-24 21:32:45] 2025-11-25 05:32:04,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:32:45] 2025-11-25 05:32:04,516 | INFO     | aborting loop
[2025-11-24 21:32:45] 2025-11-25 05:32:04,522 | INFO     | all data control threads have been joined
[2025-11-24 21:32:45] 2025-11-25 05:32:05,224 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,224 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,256 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,350 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,421 | INFO     | all job control threads have been joined
[2025-11-24 21:32:45] 2025-11-25 05:32:05,436 | INFO     | [payload] control thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,528 | INFO     | [data] control thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,530 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,757 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:05,956 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:06,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:06,180 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:06,216 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:06,427 | INFO     | [job] control thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:06,633 | INFO     | [job] validate thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:06,712 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:08,219 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:32:45] 2025-11-25 05:32:34,088 | INFO     | PID=3044243 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 21:32:45] 2025-11-25 05:32:34,088 | INFO     | .. there are 21 such processes running
[2025-11-24 21:32:45] 2025-11-25 05:32:34,088 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:32:45] 2025-11-25 05:32:34,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:32:45] 2025-11-25 05:32:34,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:32:45] 2025-11-25 05:32:38,707 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:32:45] 2025-11-25 05:32:40,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993845921600)>', '<ExcThread(monitor, started 139993141978880)>']
[2025-11-24 21:32:45] 2025-11-25 05:32:41,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:32:45] 2025-11-25 05:32:41,135 | INFO     | [monitor] control thread has ended
[2025-11-24 21:32:45] 2025-11-25 05:32:45,153 | INFO     | all workflow threads have been joined
[2025-11-24 21:32:45] 2025-11-25 05:32:45,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:32:45] 2025-11-25 05:32:45,153 | INFO     | traces error code: 0
[2025-11-24 21:32:45] 2025-11-25 05:32:45,154 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:32:45] 2025-11-25 05:32:45,275 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:32:45] 2025-11-25 05:32:45,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:32:45] 2025-11-25 05:32:45,278 [wrapper] pilotpid: 3044243
[2025-11-24 21:32:45] 2025-11-25 05:32:45,280 [wrapper] Pilot exit status: 0
[2025-11-24 21:32:45] 2025-11-25 05:32:45,307 [wrapper] pandaids: 6895939051
[2025-11-24 21:32:45] 2025-11-25 05:32:45,378 [wrapper] cleanup supervisor_pilot 3044270 3044244
[2025-11-24 21:32:45] 2025-11-25 05:32:45,381 [wrapper] Test setup, not cleaning
[2025-11-24 21:32:45] 2025-11-25 05:32:45,383 [wrapper] apfmon messages muted
[2025-11-24 21:32:45] 2025-11-25 05:32:45,385 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:32:45] 2025-11-25 05:32:45,387 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:32:45]  *** Error codes and diagnostics ***
[2025-11-24 21:32:45]     "exeErrorCode": 65,
[2025-11-24 21:32:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 21:32:45]     "pilotErrorCode": 1305,
[2025-11-24 21:32:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 21:32:45]  *** Listing of results directory ***
[2025-11-24 21:32:45] total 405272
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc    576529 Nov 24 09:01 pilot3.tar.gz
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc      5112 Nov 24 09:23 queuedata.json
[2025-11-24 21:32:45] -rwx------. 1 boinc boinc     36292 Nov 24 09:24 runpilot2-wrapper.sh
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc       100 Nov 24 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:32:45] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 21:27 run_atlas
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc       105 Nov 24 21:27 job.xml
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc      6595 Nov 24 21:27 init_data.xml
[2025-11-24 21:32:45] -rw-r--r--. 2 boinc boinc 410785191 Nov 24 21:27 EVNT.47483658._001406.pool.root.1
[2025-11-24 21:32:45] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:27 start_atlas.sh
[2025-11-24 21:32:45] drwxrwx--x. 2 boinc boinc      4096 Nov 24 21:27 shared
[2025-11-24 21:32:45] -rw-r--r--. 2 boinc boinc    590104 Nov 24 21:27 input.tar.gz
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc         0 Nov 24 21:27 boinc_lockfile
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc      2785 Nov 24 21:27 pandaJob.out
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc    991801 Nov 24 21:27 agis_schedconf.cvmfs.json
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc   1516227 Nov 24 21:27 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:32:45] drwx------. 5 boinc boinc      4096 Nov 24 21:27 pilot3
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc       525 Nov 24 21:29 boinc_task_state.xml
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc      1011 Nov 24 21:29 memory_monitor_summary.json
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc     49115 Nov 24 21:29 log.47556149._003930.job.log.tgz.1
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc        95 Nov 24 21:31 pilot_heartbeat.json
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc     10332 Nov 24 21:32 heartbeat.json
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc      8192 Nov 24 21:32 boinc_mmap_file
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc        23 Nov 24 21:32 wrapper_checkpoint.txt
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc      4823 Nov 24 21:32 pilotlog.txt
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc     99768 Nov 24 21:32 log.47556149._003930.job.log.1
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc       186 Nov 24 21:32 output.list
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc       620 Nov 24 21:32 runtime_log
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc    174080 Nov 24 21:32 result.tar.gz
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc       645 Nov 24 21:32 t7ANDmCUph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaoLKDmcwnf3n.diag
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc      8636 Nov 24 21:32 runtime_log.err
[2025-11-24 21:32:45] -rw-r--r--. 1 boinc boinc     22474 Nov 24 21:32 stderr.txt
[2025-11-24 21:32:45] No HITS result produced
[2025-11-24 21:32:45]  *** Contents of shared directory: ***
[2025-11-24 21:32:45] total 401928
[2025-11-24 21:32:45] -rw-r--r--. 2 boinc boinc 410785191 Nov 24 21:27 ATLAS.root_0
[2025-11-24 21:32:45] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:27 start_atlas.sh
[2025-11-24 21:32:45] -rw-r--r--. 2 boinc boinc    590104 Nov 24 21:27 input.tar.gz
[2025-11-24 21:32:45] -rw-------. 1 boinc boinc    174080 Nov 24 21:32 result.tar.gz
21:32:47 (3036763): run_atlas exited; CPU time 45.059496
21:32:47 (3036763): called boinc_finish(0)

</stderr_txt>
]]>

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