Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:14:29 (1126507): wrapper (7.7.26015): starting
00:14:29 (1126507): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:14:29] Arguments: --nthreads 9
[2025-11-25 00:14:29] Threads: 9
[2025-11-25 00:14:29] Checking for CVMFS
[2025-11-25 00:14:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:14:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:14:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:14:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:14:31] 2.13.3.0 8980 28179 320516 153271 3 59 17708734 32935936 26237 16776704 0 153202134 99.765 90451758 32800 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:14:31] CVMFS is ok
[2025-11-25 00:14:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:14:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:14:31] Further information can be found at the LHC@home message board.
[2025-11-25 00:14:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:14:31] Checking for apptainer binary...
[2025-11-25 00:14:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:14:31] Running /usr/bin/apptainer --version
[2025-11-25 00:14:31] apptainer version 1.4.4-1.el9
[2025-11-25 00:14:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:14:32] c-5-4.aglt2.org
[2025-11-25 00:14:32] apptainer works
[2025-11-25 00:14:32] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:14:32] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:14:32] Starting ATLAS job with PandaID=6895386555
[2025-11-25 00:14:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:30:39 (1184756): wrapper (7.7.26015): starting
00:30:39 (1184756): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:30:39] Arguments: --nthreads 9
[2025-11-25 00:30:39] Threads: 9
[2025-11-25 00:30:39] This job has been restarted, cleaning up previous attempt
[2025-11-25 00:30:39] Checking for CVMFS
[2025-11-25 00:30:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:30:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:30:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:30:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:30:39] 2.13.3.0 8980 28195 320120 153272 3 111 17773321 32935936 22264 16776704 0 153250879 99.765 90464893 32800 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:30:39] CVMFS is ok
[2025-11-25 00:30:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:30:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:30:39] Further information can be found at the LHC@home message board.
[2025-11-25 00:30:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:30:39] Checking for apptainer binary...
[2025-11-25 00:30:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:30:39] Running /usr/bin/apptainer --version
[2025-11-25 00:30:39] apptainer version 1.4.4-1.el9
[2025-11-25 00:30:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:30:39] c-5-4.aglt2.org
[2025-11-25 00:30:39] apptainer works
[2025-11-25 00:30:39] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:30:39] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:30:39] Starting ATLAS job with PandaID=6895386555
[2025-11-25 00:30:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:57:18]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:57:18] 2025-11-26 01:56:44,495 | INFO     | time since job start (73554s) is within the limit (172800.0s)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,620 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 20:57:18] 2025-11-26 01:56:44,624 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1675999999993
[2025-11-25 20:57:18] 2025-11-26 01:56:44,628 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895386555/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,629 | INFO     | extracted standard info from prmon json
[2025-11-25 20:57:18] 2025-11-26 01:56:44,629 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:57:18] 2025-11-26 01:56:44,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:57:18] 2025-11-26 01:56:44,642 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:57:18] 2025-11-26 01:56:44,644 | INFO     | sum of square deviations: 543893927504.78436
[2025-11-25 20:57:18] 2025-11-26 01:56:44,665 | INFO     | sum of deviations: 3820153673527.248
[2025-11-25 20:57:18] 2025-11-26 01:56:44,666 | INFO     | mean x: 1764085432.425373
[2025-11-25 20:57:18] 2025-11-26 01:56:44,666 | INFO     | mean y: 3050137.5472636814
[2025-11-25 20:57:18] 2025-11-26 01:56:44,666 | INFO     | intersect: -12387375833.9514
[2025-11-25 20:57:18] 2025-11-26 01:56:44,668 | INFO     | chi2: 5.728540710420287
[2025-11-25 20:57:18] 2025-11-26 01:56:44,669 | INFO     | sum of square deviations: 537157700078.6716
[2025-11-25 20:57:18] 2025-11-26 01:56:44,695 | INFO     | sum of deviations: 4240090896107.8584
[2025-11-25 20:57:18] 2025-11-26 01:56:44,696 | INFO     | mean x: 1764085279.933389
[2025-11-25 20:57:18] 2025-11-26 01:56:44,696 | INFO     | mean y: 3059640.1856786013
[2025-11-25 20:57:18] 2025-11-26 01:56:44,696 | INFO     | intersect: -13921867684.33736
[2025-11-25 20:57:18] 2025-11-26 01:56:44,697 | INFO     | chi2: 2.5879470842092256
[2025-11-25 20:57:18] 2025-11-26 01:56:44,697 | INFO     | current chi2=2.5879470842092256 (change=54.82362411247741 %)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,699 | INFO     | sum of square deviations: 530477334164.9028
[2025-11-25 20:57:18] 2025-11-26 01:56:44,736 | INFO     | sum of deviations: 4331377674640.1885
[2025-11-25 20:57:18] 2025-11-26 01:56:44,737 | INFO     | mean x: 1764085127.4414716
[2025-11-25 20:57:18] 2025-11-26 01:56:44,737 | INFO     | mean y: 3061720.64548495
[2025-11-25 20:57:18] 2025-11-26 01:56:44,737 | INFO     | intersect: -14400793910.987488
[2025-11-25 20:57:18] 2025-11-26 01:56:44,739 | INFO     | chi2: 2.2546721882797436
[2025-11-25 20:57:18] 2025-11-26 01:56:44,739 | INFO     | current chi2=2.2546721882797436 (change=12.877964080603203 %)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,739 | INFO     | right removable region: 1195
[2025-11-25 20:57:18] 2025-11-26 01:56:44,741 | INFO     | sum of square deviations: 537156797154.6976
[2025-11-25 20:57:18] 2025-11-26 01:56:44,779 | INFO     | sum of deviations: 3501085998852.5913
[2025-11-25 20:57:18] 2025-11-26 01:56:44,779 | INFO     | mean x: 1764085584.9275603
[2025-11-25 20:57:18] 2025-11-26 01:56:44,780 | INFO     | mean y: 3057351.190674438
[2025-11-25 20:57:18] 2025-11-26 01:56:44,780 | INFO     | intersect: -11494917495.0419
[2025-11-25 20:57:18] 2025-11-26 01:56:44,782 | INFO     | chi2: 3.817123103481564
[2025-11-25 20:57:18] 2025-11-26 01:56:44,782 | INFO     | current chi2=3.817123103481564 (change=33.366571061663755 %)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,784 | INFO     | sum of square deviations: 530475456415.2402
[2025-11-25 20:57:18] 2025-11-26 01:56:44,821 | INFO     | sum of deviations: 3384629099971.076
[2025-11-25 20:57:18] 2025-11-26 01:56:44,821 | INFO     | mean x: 1764085737.430602
[2025-11-25 20:57:18] 2025-11-26 01:56:44,822 | INFO     | mean y: 3060009.085284281
[2025-11-25 20:57:18] 2025-11-26 01:56:44,822 | INFO     | intersect: -11252457752.47126
[2025-11-25 20:57:18] 2025-11-26 01:56:44,823 | INFO     | chi2: 3.7243709787812778
[2025-11-25 20:57:18] 2025-11-26 01:56:44,824 | INFO     | current chi2=3.7243709787812778 (change=2.429896081048255 %)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,824 | INFO     | left removable region: 20
[2025-11-25 20:57:18] 2025-11-26 01:56:44,825 | INFO     | sum of square deviations: 503021073153.1367
[2025-11-25 20:57:18] 2025-11-26 01:56:44,862 | INFO     | sum of deviations: 3706008098144.983
[2025-11-25 20:57:18] 2025-11-26 01:56:44,863 | INFO     | mean x: 1764085706.9506383
[2025-11-25 20:57:18] 2025-11-26 01:56:44,863 | INFO     | mean y: 3075754.689361702
[2025-11-25 20:57:18] 2025-11-26 01:56:44,863 | INFO     | intersect: -12993826889.567413
[2025-11-25 20:57:18] 2025-11-26 01:56:44,865 | INFO     | chi2: 0.16745979349752954
[2025-11-25 20:57:18] 2025-11-26 01:56:44,865 | INFO     | current memory leak: 7.37 B/s (using 1175 data points, chi2=0.17)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,867 | INFO     | could have reported an average CPU frequency of 2600 MHz (43 samples)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,867 | INFO     | ..............................
[2025-11-25 20:57:18] 2025-11-26 01:56:44,867 | INFO     | . Timing measurements:
[2025-11-25 20:57:18] 2025-11-26 01:56:44,867 | INFO     | . get job = 0 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,867 | INFO     | . initial setup = 1 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,867 | INFO     | . payload setup = 5 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,867 | INFO     | . stage-in = 0 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,868 | INFO     | . payload execution = 73515 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,868 | INFO     | . stage-out = 3 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,868 | INFO     | . log creation = 0 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,868 | INFO     | ..............................
[2025-11-25 20:57:18] 2025-11-26 01:56:44,978 | INFO     | 
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | job summary report
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | --------------------------------------------------
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | PanDA job id: 6895386555
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | task id: 47556149
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | errors: (none)
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | pilot state: finished 
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | transexitcode: 0
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | exeerrorcode: 0
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | exeerrordiag: 
[2025-11-25 20:57:18] 2025-11-26 01:56:44,979 | INFO     | exitcode: 0
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | exitmsg: OK
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | cpuconsumptiontime: 300161 s
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | nevents: 1000
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | neventsw: 0
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | pid: 1227967
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | pgrp: 1227967
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | corecount: 9
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | event service: False
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | sizes: {0: 2283431, 1: 2284287, 5: 2284549, 12: 2284605, 73525: 2343320, 73529: 2352319, 73531: 2352531, 73539: 2352777}
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | --------------------------------------------------
[2025-11-25 20:57:18] 2025-11-26 01:56:44,980 | INFO     | 
[2025-11-25 20:57:18] 2025-11-26 01:56:44,981 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 20:57:18] 2025-11-26 01:56:44,999 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:44,999 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:44,999 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:44,999 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,003 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:57:18] 2025-11-26 01:56:45,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:57:18] 2025-11-26 01:56:45,004 | INFO     | job 6895386555 has completed (purged errors)
[2025-11-25 20:57:18] 2025-11-26 01:56:45,004 | INFO     | overall cleanup function is called
[2025-11-25 20:57:18] 2025-11-26 01:56:46,018 | INFO     | PID=1202938 has CPU usage=18.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 20:57:18] 2025-11-26 01:56:46,018 | INFO     | .. there are 42 such processes running
[2025-11-25 20:57:18] 2025-11-26 01:56:46,023 | INFO     | --- collectZombieJob: --- 10, [1227967]
[2025-11-25 20:57:18] 2025-11-26 01:56:46,023 | INFO     | zombie collector waiting for pid 1227967
[2025-11-25 20:57:18] 2025-11-26 01:56:46,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:57:18] 2025-11-26 01:56:46,023 | INFO     | collected zombie processes
[2025-11-25 20:57:18] 2025-11-26 01:56:46,023 | INFO     | will attempt to kill all subprocesses of pid=1227967
[2025-11-25 20:57:18] 2025-11-26 01:56:46,348 | INFO     | process IDs to be killed: [1227967] (in reverse order)
[2025-11-25 20:57:18] 2025-11-26 01:56:46,478 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:57:18] 2025-11-26 01:56:46,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:57:18] 2025-11-26 01:56:46,494 | INFO     | did not find any defunct processes belonging to 1227967
[2025-11-25 20:57:18] 2025-11-26 01:56:46,510 | INFO     | did not find any defunct processes belonging to 1227967
[2025-11-25 20:57:18] 2025-11-26 01:56:46,511 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:57:18] 2025-11-26 01:56:46,512 | INFO     | ready for new job
[2025-11-25 20:57:18] 2025-11-26 01:56:46,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:57:18] 2025-11-26 01:56:46,517 | INFO     | ***************************************
[2025-11-25 20:57:18] 2025-11-26 01:56:46,518 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:57:18] 2025-11-26 01:56:46,518 | INFO     | ***************************************
[2025-11-25 20:57:18] 2025-11-26 01:56:46,518 | INFO     | 
[2025-11-25 20:57:18] 2025-11-26 01:56:46,519 | INFO     | architecture information:
[2025-11-25 20:57:18] 2025-11-26 01:56:46,519 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:57:18] 2025-11-26 01:56:46,529 | INFO     | cat /etc/os-release:
[2025-11-25 20:57:18] NAME="CentOS Linux"
[2025-11-25 20:57:18] VERSION="7 (Core)"
[2025-11-25 20:57:18] ID="centos"
[2025-11-25 20:57:18] ID_LIKE="rhel fedora"
[2025-11-25 20:57:18] VERSION_ID="7"
[2025-11-25 20:57:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:57:18] ANSI_COLOR="0;31"
[2025-11-25 20:57:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:57:18] HOME_URL="https://www.centos.org/"
[2025-11-25 20:57:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:57:18] 
[2025-11-25 20:57:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:57:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:57:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:57:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:57:18] 
[2025-11-25 20:57:18] 2025-11-26 01:56:46,530 | INFO     | ***************************************
[2025-11-25 20:57:18] 2025-11-26 01:56:47,033 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 20:57:18] 2025-11-26 01:56:47,051 | INFO     | sufficient remaining disk space (72006762496 B)
[2025-11-25 20:57:18] 2025-11-26 01:56:47,052 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:57:18] 2025-11-26 01:56:47,052 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:57:18] 2025-11-26 01:56:47,052 | INFO     | update_server=False
[2025-11-25 20:57:18] 2025-11-26 01:56:47,052 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:57:18] 2025-11-26 01:56:47,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:57:18] 2025-11-26 01:56:47,541 | INFO     | all job control threads have been joined
[2025-11-25 20:57:18] 2025-11-26 01:56:47,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:57:18] 2025-11-26 01:56:47,603 | INFO     | aborting loop
[2025-11-25 20:57:18] 2025-11-26 01:56:47,821 | INFO     | all data control threads have been joined
[2025-11-25 20:57:18] 2025-11-26 01:56:47,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:57:18] 2025-11-26 01:56:47,921 | INFO     | all payload control threads have been joined
[2025-11-25 20:57:18] 2025-11-26 01:56:48,057 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,096 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,186 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,434 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,546 | INFO     | [job] control thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,607 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,799 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,825 | INFO     | [data] control thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,851 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,862 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,889 | INFO     | [job] validate thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:48,926 | INFO     | [payload] control thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:49,059 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:49,289 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:49,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:57:18] 2025-11-26 01:56:50,992 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:56:51,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:57:18] 2025-11-26 01:57:02,922 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:57:18] 2025-11-26 01:57:03,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838789400384)>', '<ExcThread(monitor, started 139838011463424)>']
[2025-11-25 20:57:18] 2025-11-26 01:57:08,316 | INFO     | all workflow threads have been joined
[2025-11-25 20:57:18] 2025-11-26 01:57:08,317 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:57:18] 2025-11-26 01:57:08,317 | INFO     | traces error code: 0
[2025-11-25 20:57:18] 2025-11-26 01:57:08,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:57:18] 2025-11-26 01:57:18,645 | INFO     | PID=1202938 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:57:18] 2025-11-26 01:57:18,645 | INFO     | .. there are 42 such processes running
[2025-11-25 20:57:18] 2025-11-26 01:57:18,646 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:57:18] 2025-11-26 01:57:18,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:57:18] 2025-11-26 01:57:18,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:57:18] 2025-11-26 01:57:18,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:57:18] 2025-11-26 01:57:18,646 | INFO     | [monitor] control thread has ended
[2025-11-25 20:57:18] 2025-11-26 01:57:18,788 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:57:18] 2025-11-26 01:57:18,791 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:57:18] 2025-11-26 01:57:18,794 [wrapper] pilotpid: 1202938
[2025-11-25 20:57:18] 2025-11-26 01:57:18,798 [wrapper] Pilot exit status: 0
[2025-11-25 20:57:18] 2025-11-26 01:57:18,809 [wrapper] pandaids: 6895386555 6895386555
[2025-11-25 20:57:18] 2025-11-26 01:57:18,888 [wrapper] cleanup supervisor_pilot 1091028 1202939
[2025-11-25 20:57:18] 2025-11-26 01:57:18,891 [wrapper] Test setup, not cleaning
[2025-11-25 20:57:18] 2025-11-26 01:57:18,894 [wrapper] apfmon messages muted
[2025-11-25 20:57:18] 2025-11-26 01:57:18,896 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:57:18] 2025-11-26 01:57:18,900 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:57:18]  *** Error codes and diagnostics ***
[2025-11-25 20:57:19]     "exeErrorCode": 0,
[2025-11-25 20:57:19]     "exeErrorDiag": "",
[2025-11-25 20:57:19]     "pilotErrorCode": 0,
[2025-11-25 20:57:19]     "pilotErrorDiag": "",
[2025-11-25 20:57:19]  *** Listing of results directory ***
[2025-11-25 20:57:19] total 1720624
[2025-11-25 20:57:19] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:25 queuedata.json
[2025-11-25 20:57:19] -rwx------. 1 boincer umatlas     36292 Nov 24 00:25 runpilot2-wrapper.sh
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:57:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:14 run_atlas
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:14 job.xml
[2025-11-25 20:57:19] -rw-r--r--. 3 boincer umatlas 411601483 Nov 25 00:14 EVNT.47483658._001246.pool.root.1
[2025-11-25 20:57:19] -rw-r--r--. 3 boincer umatlas 411601483 Nov 25 00:14 ATLAS.root_0
[2025-11-25 20:57:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:14 start_atlas.sh
[2025-11-25 20:57:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:14 shared
[2025-11-25 20:57:19] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:14 input.tar.gz
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:14 boinc_lockfile
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:30 pandaJob.out
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas        57 Nov 25 00:30 setup.sh.local
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas    991801 Nov 25 00:30 agis_schedconf.cvmfs.json
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas       533 Nov 25 20:47 boinc_task_state.xml
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas 911505863 Nov 25 20:55 HITS.47556149._002326.pool.root.1
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas      1069 Nov 25 20:56 memory_monitor_summary.json
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas        96 Nov 25 20:56 pilot_heartbeat.json
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas      6659 Nov 25 20:56 init_data.xml
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:56 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas   2397968 Nov 25 20:56 log.47556149._002326.job.log.tgz.1
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas      8647 Nov 25 20:56 heartbeat.json
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:57 boinc_mmap_file
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas        29 Nov 25 20:57 wrapper_checkpoint.txt
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas       823 Nov 25 20:57 pilotlog.txt
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas   9244556 Nov 25 20:57 log.47556149._002326.job.log.1
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas       353 Nov 25 20:57 output.list
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:57 runtime_log
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas  11663360 Nov 25 20:57 result.tar.gz
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas      9413 Nov 25 20:57 runtime_log.err
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas       786 Nov 25 20:57 qOOLDmAGeh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5TLKDmNqwuUo.diag
[2025-11-25 20:57:19] -rw-r--r--. 1 boincer umatlas     23560 Nov 25 20:57 stderr.txt
[2025-11-25 20:57:19] HITS file was successfully produced:
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas 911505863 Nov 25 20:55 shared/HITS.pool.root.1
[2025-11-25 20:57:19]  *** Contents of shared directory: ***
[2025-11-25 20:57:19] total 1304096
[2025-11-25 20:57:19] -rw-r--r--. 3 boincer umatlas 411601483 Nov 25 00:14 ATLAS.root_0
[2025-11-25 20:57:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:14 start_atlas.sh
[2025-11-25 20:57:19] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:14 input.tar.gz
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas 911505863 Nov 25 20:55 HITS.pool.root.1
[2025-11-25 20:57:19] -rw-------. 1 boincer umatlas  11663360 Nov 25 20:57 result.tar.gz
20:57:20 (1184756): run_atlas exited; CPU time 302803.338534
20:57:20 (1184756): called boinc_finish(0)

</stderr_txt>
]]>

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