Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:58:29 (529179): wrapper (7.7.26015): starting
23:58:29 (529179): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 23:58:29] Arguments: --nthreads 9
[2025-11-24 23:58:29] Threads: 9
[2025-11-24 23:58:29] Checking for CVMFS
[2025-11-24 23:58:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:58:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:58:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:58:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:58:30] 2.13.3.0 12130 26464 357856 153270 2 370 27413222 40960000 15810 16776704 0 88854580 99.648 79242455 36302 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 23:58:30] CVMFS is ok
[2025-11-24 23:58:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:58:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:58:30] Further information can be found at the LHC@home message board.
[2025-11-24 23:58:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:58:30] Checking for apptainer binary...
[2025-11-24 23:58:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:58:30] Running /usr/bin/apptainer --version
[2025-11-24 23:58:30] apptainer version 1.4.4-1.el9
[2025-11-24 23:58:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:58:30] c6-5-7-4.aglt2.org
[2025-11-24 23:58:30] apptainer works
[2025-11-24 23:58:30] Set ATHENA_PROC_NUMBER=9
[2025-11-24 23:58:30] Set ATHENA_CORE_NUMBER=9
[2025-11-24 23:58:31] Starting ATLAS job with PandaID=6895939037
[2025-11-24 23:58:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:20:05]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:20:05] 2025-11-26 15:19:21,584 | INFO     | time since job start (123614s) is within the limit (172800.0s)
[2025-11-26 10:20:05] 2025-11-26 15:19:23,591 | INFO     | time since job start (123616s) is within the limit (172800.0s)
[2025-11-26 10:20:05] 2025-11-26 15:19:23,957 | INFO     | monitor loop #7531: job 0:6895939037 is in state 'finished'
[2025-11-26 10:20:05] 2025-11-26 15:19:23,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:20:05] 2025-11-26 15:19:25,600 | INFO     | time since job start (123618s) is within the limit (172800.0s)
[2025-11-26 10:20:05] 2025-11-26 15:19:26,472 | INFO     | monitor loop #7532: job 0:6895939037 is in state 'finished'
[2025-11-26 10:20:05] 2025-11-26 15:19:26,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:20:05] 2025-11-26 15:19:27,609 | INFO     | time since job start (123620s) is within the limit (172800.0s)
[2025-11-26 10:20:05] 2025-11-26 15:19:28,978 | INFO     | monitor loop #7533: job 0:6895939037 is in state 'finished'
[2025-11-26 10:20:05] 2025-11-26 15:19:28,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:20:05] 2025-11-26 15:19:29,628 | INFO     | time since job start (123622s) is within the limit (172800.0s)
[2025-11-26 10:20:05] 2025-11-26 15:19:31,483 | INFO     | monitor loop #7534: job 0:6895939037 is in state 'finished'
[2025-11-26 10:20:05] 2025-11-26 15:19:31,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:20:05] 2025-11-26 15:19:31,635 | INFO     | time since job start (123624s) is within the limit (172800.0s)
[2025-11-26 10:20:05] 2025-11-26 15:19:32,382 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 10:20:05] 2025-11-26 15:19:32,411 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3016.4461607142866
[2025-11-26 10:20:05] 2025-11-26 15:19:32,424 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895939037/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:20:05] 2025-11-26 15:19:32,424 | INFO     | extracted standard info from prmon json
[2025-11-26 10:20:05] 2025-11-26 15:19:32,424 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:20:05] 2025-11-26 15:19:32,424 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:20:05] 2025-11-26 15:19:32,676 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:20:05] 2025-11-26 15:19:32,705 | INFO     | sum of square deviations: 2574472140936.1157
[2025-11-26 10:20:05] 2025-11-26 15:19:32,974 | INFO     | sum of deviations: 11820861253419.19
[2025-11-26 10:20:05] 2025-11-26 15:19:32,974 | INFO     | mean x: 1764108564.7881482
[2025-11-26 10:20:05] 2025-11-26 15:19:32,974 | INFO     | mean y: 3009389.3150617285
[2025-11-26 10:20:05] 2025-11-26 15:19:32,974 | INFO     | intersect: -8097013232.31121
[2025-11-26 10:20:05] 2025-11-26 15:19:32,976 | INFO     | chi2: 17.23612076330634
[2025-11-26 10:20:05] 2025-11-26 15:19:32,979 | INFO     | sum of square deviations: 2555449740338.1904
[2025-11-26 10:20:05] 2025-11-26 15:19:33,040 | INFO     | sum of deviations: 12540312169600.229
[2025-11-26 10:20:05] 2025-11-26 15:19:33,041 | INFO     | mean x: 1764108412.3024752
[2025-11-26 10:20:05] 2025-11-26 15:19:33,041 | INFO     | mean y: 3015157.2762376238
[2025-11-26 10:20:05] 2025-11-26 15:19:33,041 | INFO     | intersect: -8653962063.63485
[2025-11-26 10:20:05] 2025-11-26 15:19:33,043 | INFO     | chi2: 13.96870829090032
[2025-11-26 10:20:05] 2025-11-26 15:19:33,043 | INFO     | current chi2=13.96870829090032 (change=18.956774075068868 %)
[2025-11-26 10:20:05] 2025-11-26 15:19:33,043 | INFO     | right removable region: 2019
[2025-11-26 10:20:05] 2025-11-26 15:19:33,045 | INFO     | sum of square deviations: 2555442590528.191
[2025-11-26 10:20:05] 2025-11-26 15:19:33,339 | INFO     | sum of deviations: 11017224026783.514
[2025-11-26 10:20:05] 2025-11-26 15:19:33,340 | INFO     | mean x: 1764108717.3024752
[2025-11-26 10:20:05] 2025-11-26 15:19:33,340 | INFO     | mean y: 3015829.2544554453
[2025-11-26 10:20:05] 2025-11-26 15:19:33,340 | INFO     | intersect: -7602547691.585935
[2025-11-26 10:20:05] 2025-11-26 15:19:33,342 | INFO     | chi2: 13.549340021520596
[2025-11-26 10:20:05] 2025-11-26 15:19:33,343 | INFO     | current chi2=13.549340021520596 (change=21.389852115880174 %)
[2025-11-26 10:20:05] 2025-11-26 15:19:33,343 | INFO     | left removable region: 10
[2025-11-26 10:20:05] 2025-11-26 15:19:33,345 | INFO     | sum of square deviations: 2513916554431.8096
[2025-11-26 10:20:05] 2025-11-26 15:19:33,476 | INFO     | sum of deviations: 11066422227484.117
[2025-11-26 10:20:05] 2025-11-26 15:19:33,476 | INFO     | mean x: 1764108686.834246
[2025-11-26 10:20:05] 2025-11-26 15:19:33,476 | INFO     | mean y: 3028330.588850174
[2025-11-26 10:20:05] 2025-11-26 15:19:33,476 | INFO     | intersect: -7762691477.916378
[2025-11-26 10:20:05] 2025-11-26 15:19:33,478 | INFO     | chi2: 6.917570162936907
[2025-11-26 10:20:05] 2025-11-26 15:19:33,479 | INFO     | current memory leak: 4.40 B/s (using 2009 data points, chi2=6.92)
[2025-11-26 10:20:05] 2025-11-26 15:19:33,480 | INFO     | could have reported an average CPU frequency of 2855 MHz (71 samples)
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | ..............................
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . Timing measurements:
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . get job = 0 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . initial setup = 3 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . payload setup = 24 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . stage-in = 0 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . payload execution = 123542 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . stage-out = 5 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | . log creation = 1 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,481 | INFO     | ..............................
[2025-11-26 10:20:05] 2025-11-26 15:19:33,564 | INFO     | 
[2025-11-26 10:20:05] 2025-11-26 15:19:33,564 | INFO     | job summary report
[2025-11-26 10:20:05] 2025-11-26 15:19:33,564 | INFO     | --------------------------------------------------
[2025-11-26 10:20:05] 2025-11-26 15:19:33,564 | INFO     | PanDA job id: 6895939037
[2025-11-26 10:20:05] 2025-11-26 15:19:33,564 | INFO     | task id: 47556149
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | errors: (none)
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | pilot state: finished 
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | transexitcode: 0
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | exeerrorcode: 0
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | exeerrordiag: 
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | exitcode: 0
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | exitmsg: OK
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | cpuconsumptiontime: 256494 s
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | nevents: 1000
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | neventsw: 0
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | pid: 543667
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | pgrp: 543667
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | corecount: 9
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | event service: False
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284337, 18: 2284627, 22: 2284655, 123568: 2367375, 123573: 2376374, 123574: 2376430, 123589: 2376676}
[2025-11-26 10:20:05] 2025-11-26 15:19:33,565 | INFO     | --------------------------------------------------
[2025-11-26 10:20:05] 2025-11-26 15:19:33,566 | INFO     | 
[2025-11-26 10:20:05] 2025-11-26 15:19:33,566 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 10:20:05] 2025-11-26 15:19:33,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,609 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:20:05] 2025-11-26 15:19:33,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,611 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:20:05] 2025-11-26 15:19:33,611 | INFO     | job 6895939037 has completed (purged errors)
[2025-11-26 10:20:05] 2025-11-26 15:19:33,611 | INFO     | overall cleanup function is called
[2025-11-26 10:20:05] 2025-11-26 15:19:34,645 | INFO     | --- collectZombieJob: --- 10, [543667]
[2025-11-26 10:20:05] 2025-11-26 15:19:34,645 | INFO     | zombie collector waiting for pid 543667
[2025-11-26 10:20:05] 2025-11-26 15:19:34,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:20:05] 2025-11-26 15:19:34,645 | INFO     | collected zombie processes
[2025-11-26 10:20:05] 2025-11-26 15:19:34,645 | INFO     | will attempt to kill all subprocesses of pid=543667
[2025-11-26 10:20:05] 2025-11-26 15:19:35,612 | INFO     | process IDs to be killed: [543667] (in reverse order)
[2025-11-26 10:20:05] 2025-11-26 15:19:35,822 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:20:05] 2025-11-26 15:19:35,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:20:05] 2025-11-26 15:19:35,835 | INFO     | did not find any defunct processes belonging to 543667
[2025-11-26 10:20:05] 2025-11-26 15:19:35,848 | INFO     | did not find any defunct processes belonging to 543667
[2025-11-26 10:20:05] 2025-11-26 15:19:35,849 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:20:05] 2025-11-26 15:19:35,849 | INFO     | ready for new job
[2025-11-26 10:20:05] 2025-11-26 15:19:35,849 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:20:05] 2025-11-26 15:19:35,858 | INFO     | ***************************************
[2025-11-26 10:20:05] 2025-11-26 15:19:35,858 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:20:05] 2025-11-26 15:19:35,858 | INFO     | ***************************************
[2025-11-26 10:20:05] 2025-11-26 15:19:35,858 | INFO     | 
[2025-11-26 10:20:05] 2025-11-26 15:19:35,862 | INFO     | architecture information:
[2025-11-26 10:20:05] 2025-11-26 15:19:35,862 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:20:05] 2025-11-26 15:19:35,880 | INFO     | cat /etc/os-release:
[2025-11-26 10:20:05] NAME="CentOS Linux"
[2025-11-26 10:20:05] VERSION="7 (Core)"
[2025-11-26 10:20:05] ID="centos"
[2025-11-26 10:20:05] ID_LIKE="rhel fedora"
[2025-11-26 10:20:05] VERSION_ID="7"
[2025-11-26 10:20:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:20:05] ANSI_COLOR="0;31"
[2025-11-26 10:20:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:20:05] HOME_URL="https://www.centos.org/"
[2025-11-26 10:20:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:20:05] 
[2025-11-26 10:20:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:20:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:20:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:20:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:20:05] 
[2025-11-26 10:20:05] 2025-11-26 15:19:35,880 | INFO     | ***************************************
[2025-11-26 10:20:05] 2025-11-26 15:19:36,384 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 10:20:05] 2025-11-26 15:19:36,460 | INFO     | sufficient remaining disk space (69410488320 B)
[2025-11-26 10:20:05] 2025-11-26 15:19:36,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:20:05] 2025-11-26 15:19:36,461 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:20:05] 2025-11-26 15:19:36,461 | INFO     | update_server=False
[2025-11-26 10:20:05] 2025-11-26 15:19:36,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:20:05] 2025-11-26 15:19:36,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:20:05] 2025-11-26 15:19:36,576 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 10:20:05] 2025-11-26 15:19:36,576 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 10:20:05] 2025-11-26 15:19:36,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:20:05] 2025-11-26 15:19:36,576 | INFO     | will abort loop
[2025-11-26 10:20:05] 2025-11-26 15:19:36,587 | INFO     | all payload control threads have been joined
[2025-11-26 10:20:05] 2025-11-26 15:19:37,227 | INFO     | all job control threads have been joined
[2025-11-26 10:20:05] 2025-11-26 15:19:37,242 | INFO     | all data control threads have been joined
[2025-11-26 10:20:05] 2025-11-26 15:19:37,467 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:37,582 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:37,601 | INFO     | [payload] control thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:37,826 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:37,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:20:05] 2025-11-26 15:19:38,083 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:38,205 | INFO     | [job] validate thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:38,233 | INFO     | [job] control thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:38,248 | INFO     | [data] control thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:38,486 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:38,539 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:38,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:20:05] 2025-11-26 15:19:38,672 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:38,782 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:39,060 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:39,592 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:41,937 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:46,801 | INFO     | job.realtimelogging is not enabled
[2025-11-26 10:20:05] 2025-11-26 15:19:47,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:20:05] 2025-11-26 15:19:51,426 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:20:05] 2025-11-26 15:19:53,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704297891648)>', '<ExcThread(monitor, started 140704024073984)>']
[2025-11-26 10:20:05] 2025-11-26 15:19:58,100 | INFO     | all workflow threads have been joined
[2025-11-26 10:20:05] 2025-11-26 15:19:58,100 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:20:05] 2025-11-26 15:19:58,100 | INFO     | traces error code: 0
[2025-11-26 10:20:05] 2025-11-26 15:19:58,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:20:05] 2025-11-26 15:20:05,202 | INFO     | PID=533505 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 10:20:05] 2025-11-26 15:20:05,203 | INFO     | .. there are 26 such processes running
[2025-11-26 10:20:05] 2025-11-26 15:20:05,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:20:05] 2025-11-26 15:20:05,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:20:05] 2025-11-26 15:20:05,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:20:05] 2025-11-26 15:20:05,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:20:05] 2025-11-26 15:20:05,204 | INFO     | [monitor] control thread has ended
[2025-11-26 10:20:05] 2025-11-26 15:20:05,408 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:20:05] 2025-11-26 15:20:05,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:20:05] 2025-11-26 15:20:05,417 [wrapper] pilotpid: 533505
[2025-11-26 10:20:05] 2025-11-26 15:20:05,421 [wrapper] Pilot exit status: 0
[2025-11-26 10:20:05] 2025-11-26 15:20:05,441 [wrapper] pandaids: 6895939037
[2025-11-26 10:20:05] 2025-11-26 15:20:05,535 [wrapper] cleanup supervisor_pilot 1835749 533506
[2025-11-26 10:20:05] 2025-11-26 15:20:05,542 [wrapper] Test setup, not cleaning
[2025-11-26 10:20:05] 2025-11-26 15:20:05,546 [wrapper] apfmon messages muted
[2025-11-26 10:20:05] 2025-11-26 15:20:05,551 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:20:05] 2025-11-26 15:20:05,555 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:20:05]  *** Error codes and diagnostics ***
[2025-11-26 10:20:05]     "exeErrorCode": 0,
[2025-11-26 10:20:05]     "exeErrorDiag": "",
[2025-11-26 10:20:05]     "pilotErrorCode": 0,
[2025-11-26 10:20:05]     "pilotErrorDiag": "",
[2025-11-26 10:20:05]  *** Listing of results directory ***
[2025-11-26 10:20:05] total 1346852
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 10:20:05] -rwx------. 1 boincer umatlas     36292 Nov 24 12:23 runpilot2-wrapper.sh
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:23 queuedata.json
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:20:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:58 run_atlas
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:58 job.xml
[2025-11-26 10:20:05] -rw-r--r--. 2 boincer umatlas 410935941 Nov 24 23:58 EVNT.47483658._001405.pool.root.1
[2025-11-26 10:20:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:58 start_atlas.sh
[2025-11-26 10:20:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:58 shared
[2025-11-26 10:20:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 23:58 input.tar.gz
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:58 boinc_lockfile
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 23:58 pandaJob.out
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas        57 Nov 24 23:58 setup.sh.local
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas    991801 Nov 24 23:59 agis_schedconf.cvmfs.json
[2025-11-26 10:20:05] drwx------. 5 boincer umatlas      4096 Nov 24 23:59 pilot3
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas       533 Nov 26 09:39 boinc_task_state.xml
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas      6840 Nov 26 10:10 init_data.xml
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas 926598680 Nov 26 10:18 HITS.47556149._003916.pool.root.1
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas      1058 Nov 26 10:19 memory_monitor_summary.json
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:19 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas   3037210 Nov 26 10:19 log.47556149._003916.job.log.tgz.1
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas      8614 Nov 26 10:19 heartbeat.json
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas        95 Nov 26 10:20 pilot_heartbeat.json
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas       822 Nov 26 10:20 pilotlog.txt
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas  15822289 Nov 26 10:20 log.47556149._003916.job.log.1
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 10:20 boinc_mmap_file
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas       353 Nov 26 10:20 output.list
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas        29 Nov 26 10:20 wrapper_checkpoint.txt
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas       620 Nov 26 10:20 runtime_log
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas  18882560 Nov 26 10:20 result.tar.gz
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 10:20 runtime_log.err
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas       663 Nov 26 10:20 1dwKDm5Sph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMoLKDmZA7EDn.diag
[2025-11-26 10:20:05] -rw-r--r--. 1 boincer umatlas     21732 Nov 26 10:20 stderr.txt
[2025-11-26 10:20:05] HITS file was successfully produced:
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas 926598680 Nov 26 10:18 shared/HITS.pool.root.1
[2025-11-26 10:20:05]  *** Contents of shared directory: ***
[2025-11-26 10:20:05] total 1325236
[2025-11-26 10:20:05] -rw-r--r--. 2 boincer umatlas 410935941 Nov 24 23:58 ATLAS.root_0
[2025-11-26 10:20:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:58 start_atlas.sh
[2025-11-26 10:20:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 23:58 input.tar.gz
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas 926598680 Nov 26 10:18 HITS.pool.root.1
[2025-11-26 10:20:05] -rw-------. 1 boincer umatlas  18882560 Nov 26 10:20 result.tar.gz
10:20:07 (529179): run_atlas exited; CPU time 258769.975187
10:20:07 (529179): called boinc_finish(0)

</stderr_txt>
]]>

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