Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:04:59 (3329513): wrapper (7.7.26015): starting
06:04:59 (3329513): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 06:04:59] Arguments: --nthreads 3
[2025-11-25 06:04:59] Threads: 3
[2025-11-25 06:04:59] Checking for CVMFS
[2025-11-25 06:04:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 06:05:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 06:05:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 06:05:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 06:05:00] 2.9.2.0 2683671 137 64300 153270 2 88 35108347 36864000 0 130560 0 1940718 99.999 7913 15130 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 06:05:00] CVMFS is ok
[2025-11-25 06:05:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 06:05:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 06:05:00] Further information can be found at the LHC@home message board.
[2025-11-25 06:05:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 06:05:00] Checking for apptainer binary...
[2025-11-25 06:05:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 06:05:00] Running /usr/bin/apptainer --version
[2025-11-25 06:05:00] apptainer version 1.4.1-1.1
[2025-11-25 06:05:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 06:05:00] thA335
[2025-11-25 06:05:00] apptainer works
[2025-11-25 06:05:00] Set ATHENA_PROC_NUMBER=3
[2025-11-25 06:05:00] Set ATHENA_CORE_NUMBER=3
[2025-11-25 06:05:00] Starting ATLAS job with PandaID=6895939034
[2025-11-25 06:05:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:09:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:09:19] 2025-11-25 05:08:27,666 | INFO     | update_server=False
[2025-11-25 06:09:19] 2025-11-25 05:08:27,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:09:19] 2025-11-25 05:08:27,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:09:19] 2025-11-25 05:08:27,861 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 06:09:19] 2025-11-25 05:08:27,861 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 06:09:19] 2025-11-25 05:08:27,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:09:19] 2025-11-25 05:08:27,863 | INFO     | will abort loop
[2025-11-25 06:09:19] 2025-11-25 05:08:27,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:09:19] 2025-11-25 05:08:28,087 | INFO     | all data control threads have been joined
[2025-11-25 06:09:19] 2025-11-25 05:08:28,389 | INFO     | all payload control threads have been joined
[2025-11-25 06:09:19] 2025-11-25 05:08:28,672 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:28,673 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:28,869 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:28,965 | INFO     | all job control threads have been joined
[2025-11-25 06:09:19] 2025-11-25 05:08:29,015 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,094 | INFO     | [data] control thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,369 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,382 | INFO     | [job] validate thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,395 | INFO     | [payload] control thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,471 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,532 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,846 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,889 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,962 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:29,971 | INFO     | [job] control thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:30,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:09:19] 2025-11-25 05:08:34,111 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:09:19] 2025-11-25 05:08:57,572 | INFO     | PID=3333251 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:09:19] 2025-11-25 05:08:57,573 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:09:19] 2025-11-25 05:08:57,573 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:09:19] 2025-11-25 05:08:57,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:09:19] 2025-11-25 05:09:12,743 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:09:19] 2025-11-25 05:09:13,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140150524135232)>', '<ExcThread(monitor, started 140149799245568)>']
[2025-11-25 06:09:19] 2025-11-25 05:09:14,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:09:19] 2025-11-25 05:09:14,663 | INFO     | [monitor] control thread has ended
[2025-11-25 06:09:19] 2025-11-25 05:09:18,963 | INFO     | all workflow threads have been joined
[2025-11-25 06:09:19] 2025-11-25 05:09:18,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:09:19] 2025-11-25 05:09:18,964 | INFO     | traces error code: 0
[2025-11-25 06:09:19] 2025-11-25 05:09:18,965 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:09:19] 2025-11-25 05:09:19,011 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:09:19] 2025-11-25 05:09:19,014 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:09:19] 2025-11-25 05:09:19,017 [wrapper] pilotpid: 3333251
[2025-11-25 06:09:19] 2025-11-25 05:09:19,020 [wrapper] Pilot exit status: 0
[2025-11-25 06:09:19] 2025-11-25 05:09:19,027 [wrapper] pandaids: 6895939034
[2025-11-25 06:09:19] 2025-11-25 05:09:19,044 [wrapper] cleanup supervisor_pilot 3333257 3333252
[2025-11-25 06:09:19] 2025-11-25 05:09:19,046 [wrapper] Test setup, not cleaning
[2025-11-25 06:09:19] 2025-11-25 05:09:19,049 [wrapper] apfmon messages muted
[2025-11-25 06:09:19] 2025-11-25 05:09:19,052 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:09:19] 2025-11-25 05:09:19,054 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:09:19]  *** Error codes and diagnostics ***
[2025-11-25 06:09:19]     "exeErrorCode": 65,
[2025-11-25 06:09:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 06:09:19]     "pilotErrorCode": 1305,
[2025-11-25 06:09:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 06:09:19]  *** Listing of results directory ***
[2025-11-25 06:09:19] total 405396
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc    576529 Nov 24 18:01 pilot3.tar.gz
[2025-11-25 06:09:19] -rwx------ 1 boinc boinc     36292 Nov 24 18:23 runpilot2-wrapper.sh
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc      5112 Nov 24 18:23 queuedata.json
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc       100 Nov 25 06:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:09:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 06:04 run_atlas
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc       105 Nov 25 06:04 job.xml
[2025-11-25 06:09:19] -rw-r--r-- 2 boinc boinc 410935941 Nov 25 06:04 EVNT.47483658._001405.pool.root.1
[2025-11-25 06:09:19] -rw-r--r-- 2 boinc boinc    590099 Nov 25 06:04 input.tar.gz
[2025-11-25 06:09:19] -rw-r--r-- 2 boinc boinc     15847 Nov 25 06:04 start_atlas.sh
[2025-11-25 06:09:19] drwxrwx--x 2 boinc boinc      4096 Nov 25 06:04 shared
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc         0 Nov 25 06:04 boinc_setup_complete
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc      6196 Nov 25 06:04 init_data.xml
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc         0 Nov 25 06:04 boinc_lockfile
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc      2785 Nov 25 06:05 pandaJob.out
[2025-11-25 06:09:19] -rw------- 1 boinc boinc    991801 Nov 25 06:05 agis_schedconf.cvmfs.json
[2025-11-25 06:09:19] -rw------- 1 boinc boinc   1516227 Nov 25 06:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:09:19] drwx------ 5 boinc boinc      4096 Nov 25 06:05 pilot3
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc       523 Nov 25 06:06 boinc_task_state.xml
[2025-11-25 06:09:19] -rw------- 1 boinc boinc       957 Nov 25 06:06 memory_monitor_summary.json
[2025-11-25 06:09:19] -rw------- 1 boinc boinc     55693 Nov 25 06:06 log.47556149._003913.job.log.tgz.1
[2025-11-25 06:09:19] -rw------- 1 boinc boinc        95 Nov 25 06:08 pilot_heartbeat.json
[2025-11-25 06:09:19] -rw------- 1 boinc boinc      8402 Nov 25 06:08 heartbeat.json
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc      8192 Nov 25 06:09 boinc_mmap_file
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc        23 Nov 25 06:09 wrapper_checkpoint.txt
[2025-11-25 06:09:19] -rw------- 1 boinc boinc      4938 Nov 25 06:09 pilotlog.txt
[2025-11-25 06:09:19] -rw------- 1 boinc boinc     93640 Nov 25 06:09 log.47556149._003913.job.log.1
[2025-11-25 06:09:19] -rw------- 1 boinc boinc       186 Nov 25 06:09 output.list
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc       620 Nov 25 06:09 runtime_log
[2025-11-25 06:09:19] -rw------- 1 boinc boinc    163840 Nov 25 06:09 result.tar.gz
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc      8744 Nov 25 06:09 runtime_log.err
[2025-11-25 06:09:19] -rw------- 1 boinc boinc       649 Nov 25 06:09 3MrKDm5Sph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJoLKDmBE5xWn.diag
[2025-11-25 06:09:19] -rw-r--r-- 1 boinc boinc      8019 Nov 25 06:09 stderr.txt
[2025-11-25 06:09:19] No HITS result produced
[2025-11-25 06:09:19]  *** Contents of shared directory: ***
[2025-11-25 06:09:19] total 402068
[2025-11-25 06:09:19] -rw-r--r-- 2 boinc boinc 410935941 Nov 25 06:04 ATLAS.root_0
[2025-11-25 06:09:19] -rw-r--r-- 2 boinc boinc    590099 Nov 25 06:04 input.tar.gz
[2025-11-25 06:09:19] -rw-r--r-- 2 boinc boinc     15847 Nov 25 06:04 start_atlas.sh
[2025-11-25 06:09:19] -rw------- 1 boinc boinc    163840 Nov 25 06:09 result.tar.gz
06:09:20 (3329513): run_atlas exited; CPU time 31.968453
06:09:20 (3329513): called boinc_finish(0)

</stderr_txt>
]]>

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