Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:55:53 (509047): wrapper (7.7.26015): starting
23:55:53 (509047): wrapper: running run_atlas (--nthreads 11)
[2025-11-24 23:55:53] Arguments: --nthreads 11
[2025-11-24 23:55:53] Threads: 11
[2025-11-24 23:55:53] Checking for CVMFS
[2025-11-24 23:55:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:55:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:55:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:55:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:55:54] 2.13.3.0 12130 26461 352956 153270 1 370 27413222 40960000 15152 16776704 0 88808818 99.648 79242455 36302 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 23:55:54] CVMFS is ok
[2025-11-24 23:55:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:55:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:55:54] Further information can be found at the LHC@home message board.
[2025-11-24 23:55:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:55:54] Checking for apptainer binary...
[2025-11-24 23:55:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:55:54] Running /usr/bin/apptainer --version
[2025-11-24 23:55:54] apptainer version 1.4.4-1.el9
[2025-11-24 23:55:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:55:54] c6-5-7-4.aglt2.org
[2025-11-24 23:55:54] apptainer works
[2025-11-24 23:55:54] Set ATHENA_PROC_NUMBER=11
[2025-11-24 23:55:54] Set ATHENA_CORE_NUMBER=11
[2025-11-24 23:55:54] Starting ATLAS job with PandaID=6895386568
[2025-11-24 23:55:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:50:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:50:30] 2025-11-26 07:49:22,161 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 02:50:30] 2025-11-26 07:49:22,182 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3094.2445357142847
[2025-11-26 02:50:30] 2025-11-26 07:49:22,191 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895386568/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:50:30] 2025-11-26 07:49:22,192 | INFO     | extracted standard info from prmon json
[2025-11-26 02:50:30] 2025-11-26 07:49:22,192 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:50:30] 2025-11-26 07:49:22,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:50:30] 2025-11-26 07:49:22,216 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:50:30] 2025-11-26 07:49:22,219 | INFO     | sum of square deviations: 1234540877749.107
[2025-11-26 02:50:30] 2025-11-26 07:49:22,318 | INFO     | sum of deviations: 7088637031606.081
[2025-11-26 02:50:30] 2025-11-26 07:49:22,318 | INFO     | mean x: 1764094993.1350157
[2025-11-26 02:50:30] 2025-11-26 07:49:22,319 | INFO     | mean y: 3351129.247318612
[2025-11-26 02:50:30] 2025-11-26 07:49:22,319 | INFO     | intersect: -10125944158.574749
[2025-11-26 02:50:30] 2025-11-26 07:49:22,320 | INFO     | chi2: 14.415361405041411
[2025-11-26 02:50:30] 2025-11-26 07:49:22,322 | INFO     | sum of square deviations: 1222896647502.1658
[2025-11-26 02:50:30] 2025-11-26 07:49:22,455 | INFO     | sum of deviations: 7753518798712.573
[2025-11-26 02:50:30] 2025-11-26 07:49:22,455 | INFO     | mean x: 1764094840.6607594
[2025-11-26 02:50:30] 2025-11-26 07:49:22,455 | INFO     | mean y: 3359835.3481012657
[2025-11-26 02:50:30] 2025-11-26 07:49:22,455 | INFO     | intersect: -11181512195.917187
[2025-11-26 02:50:30] 2025-11-26 07:49:22,465 | INFO     | chi2: 10.796695497612621
[2025-11-26 02:50:30] 2025-11-26 07:49:22,465 | INFO     | current chi2=10.796695497612621 (change=25.102845539226315 %)
[2025-11-26 02:50:30] 2025-11-26 07:49:22,467 | INFO     | sum of square deviations: 1211325907003.1208
[2025-11-26 02:50:30] 2025-11-26 07:49:22,601 | INFO     | sum of deviations: 8108077813552.032
[2025-11-26 02:50:30] 2025-11-26 07:49:22,602 | INFO     | mean x: 1764094688.1866667
[2025-11-26 02:50:30] 2025-11-26 07:49:22,602 | INFO     | mean y: 3364506.5542857144
[2025-11-26 02:50:30] 2025-11-26 07:49:22,602 | INFO     | intersect: -11804702108.382278
[2025-11-26 02:50:30] 2025-11-26 07:49:22,612 | INFO     | chi2: 9.56810417931854
[2025-11-26 02:50:30] 2025-11-26 07:49:22,612 | INFO     | current chi2=9.56810417931854 (change=11.379327300336925 %)
[2025-11-26 02:50:30] 2025-11-26 07:49:22,612 | INFO     | right removable region: 1574
[2025-11-26 02:50:30] 2025-11-26 07:49:22,614 | INFO     | sum of square deviations: 1222886848055.4824
[2025-11-26 02:50:30] 2025-11-26 07:49:22,745 | INFO     | sum of deviations: 6373648659112.761
[2025-11-26 02:50:30] 2025-11-26 07:49:22,745 | INFO     | mean x: 1764095145.6734178
[2025-11-26 02:50:30] 2025-11-26 07:49:22,746 | INFO     | mean y: 3360487.0848101266
[2025-11-26 02:50:30] 2025-11-26 07:49:22,746 | INFO     | intersect: -9191049181.84523
[2025-11-26 02:50:30] 2025-11-26 07:49:22,747 | INFO     | chi2: 10.597686137682198
[2025-11-26 02:50:30] 2025-11-26 07:49:22,748 | INFO     | current chi2=10.597686137682198 (change=26.48338227596623 %)
[2025-11-26 02:50:30] 2025-11-26 07:49:22,757 | INFO     | sum of square deviations: 1211306596579.4387
[2025-11-26 02:50:30] 2025-11-26 07:49:22,925 | INFO     | sum of deviations: 5864992187091.557
[2025-11-26 02:50:30] 2025-11-26 07:49:22,925 | INFO     | mean x: 1764095298.2101588
[2025-11-26 02:50:30] 2025-11-26 07:49:22,925 | INFO     | mean y: 3367183.0647619045
[2025-11-26 02:50:30] 2025-11-26 07:49:22,925 | INFO     | intersect: -8538157456.943258
[2025-11-26 02:50:30] 2025-11-26 07:49:22,945 | INFO     | monitor loop #5936: job 0:6895386568 is in state 'finished'
[2025-11-26 02:50:30] 2025-11-26 07:49:22,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:50:30] 2025-11-26 07:49:22,946 | INFO     | chi2: 8.566934644757755
[2025-11-26 02:50:30] 2025-11-26 07:49:22,946 | INFO     | current chi2=8.566934644757755 (change=19.16221585109696 %)
[2025-11-26 02:50:30] 2025-11-26 07:49:22,946 | INFO     | left removable region: 20
[2025-11-26 02:50:30] 2025-11-26 07:49:22,948 | INFO     | sum of square deviations: 1163490155544.4353
[2025-11-26 02:50:30] 2025-11-26 07:49:23,153 | INFO     | sum of deviations: 6653847544363.242
[2025-11-26 02:50:30] 2025-11-26 07:49:23,153 | INFO     | mean x: 1764095267.8268983
[2025-11-26 02:50:30] 2025-11-26 07:49:23,153 | INFO     | mean y: 3385476.922779923
[2025-11-26 02:50:30] 2025-11-26 07:49:23,153 | INFO     | intersect: -10085243902.46395
[2025-11-26 02:50:30] 2025-11-26 07:49:23,155 | INFO     | chi2: 3.3683365978860715
[2025-11-26 02:50:30] 2025-11-26 07:49:23,155 | INFO     | current memory leak: 5.72 B/s (using 1554 data points, chi2=3.37)
[2025-11-26 02:50:30] 2025-11-26 07:49:23,169 | INFO     | could have reported an average CPU frequency of 2830 MHz (56 samples)
[2025-11-26 02:50:30] 2025-11-26 07:49:23,169 | INFO     | ..............................
[2025-11-26 02:50:30] 2025-11-26 07:49:23,169 | INFO     | . Timing measurements:
[2025-11-26 02:50:30] 2025-11-26 07:49:23,169 | INFO     | . get job = 0 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,170 | INFO     | . initial setup = 3 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,170 | INFO     | . payload setup = 23 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,170 | INFO     | . stage-in = 0 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,170 | INFO     | . payload execution = 96689 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,170 | INFO     | . stage-out = 8 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,170 | INFO     | . log creation = 1 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,170 | INFO     | ..............................
[2025-11-26 02:50:30] 2025-11-26 07:49:23,183 | INFO     | time since job start (96774s) is within the limit (172800.0s)
[2025-11-26 02:50:30] 2025-11-26 07:49:23,532 | INFO     | 
[2025-11-26 02:50:30] 2025-11-26 07:49:23,532 | INFO     | job summary report
[2025-11-26 02:50:30] 2025-11-26 07:49:23,532 | INFO     | --------------------------------------------------
[2025-11-26 02:50:30] 2025-11-26 07:49:23,532 | INFO     | PanDA job id: 6895386568
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | task id: 47556149
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | errors: (none)
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | pilot state: finished 
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | transexitcode: 0
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | exeerrorcode: 0
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | exeerrordiag: 
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | exitcode: 0
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | exitmsg: OK
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | cpuconsumptiontime: 253319 s
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | nevents: 1000
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | neventsw: 0
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | pid: 521279
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | pgrp: 521279
[2025-11-26 02:50:30] 2025-11-26 07:49:23,533 | INFO     | corecount: 11
[2025-11-26 02:50:30] 2025-11-26 07:49:23,534 | INFO     | event service: False
[2025-11-26 02:50:30] 2025-11-26 07:49:23,534 | INFO     | sizes: {0: 2284088, 1: 2284287, 2: 2284287, 12: 2284315, 19: 2284605, 23: 2284633, 96713: 2355135, 96722: 2364134, 96724: 2364190, 96737: 2364436}
[2025-11-26 02:50:30] 2025-11-26 07:49:23,534 | INFO     | --------------------------------------------------
[2025-11-26 02:50:30] 2025-11-26 07:49:23,534 | INFO     | 
[2025-11-26 02:50:30] 2025-11-26 07:49:23,534 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 02:50:30] 2025-11-26 07:49:23,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,600 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,602 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:50:30] 2025-11-26 07:49:23,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,602 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:50:30] 2025-11-26 07:49:23,602 | INFO     | job 6895386568 has completed (purged errors)
[2025-11-26 02:50:30] 2025-11-26 07:49:23,602 | INFO     | overall cleanup function is called
[2025-11-26 02:50:30] 2025-11-26 07:49:24,634 | INFO     | --- collectZombieJob: --- 10, [521279]
[2025-11-26 02:50:30] 2025-11-26 07:49:24,634 | INFO     | zombie collector waiting for pid 521279
[2025-11-26 02:50:30] 2025-11-26 07:49:24,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:50:30] 2025-11-26 07:49:24,634 | INFO     | collected zombie processes
[2025-11-26 02:50:30] 2025-11-26 07:49:24,634 | INFO     | will attempt to kill all subprocesses of pid=521279
[2025-11-26 02:50:30] 2025-11-26 07:49:25,020 | INFO     | process IDs to be killed: [521279] (in reverse order)
[2025-11-26 02:50:30] 2025-11-26 07:49:25,180 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:50:30] 2025-11-26 07:49:25,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:50:30] 2025-11-26 07:49:25,249 | INFO     | did not find any defunct processes belonging to 521279
[2025-11-26 02:50:30] 2025-11-26 07:49:25,305 | INFO     | did not find any defunct processes belonging to 521279
[2025-11-26 02:50:30] 2025-11-26 07:49:25,318 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:50:30] 2025-11-26 07:49:25,318 | INFO     | ready for new job
[2025-11-26 02:50:30] 2025-11-26 07:49:25,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:50:30] 2025-11-26 07:49:25,329 | INFO     | ***************************************
[2025-11-26 02:50:30] 2025-11-26 07:49:25,329 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:50:30] 2025-11-26 07:49:25,329 | INFO     | ***************************************
[2025-11-26 02:50:30] 2025-11-26 07:49:25,329 | INFO     | 
[2025-11-26 02:50:30] 2025-11-26 07:49:25,336 | INFO     | architecture information:
[2025-11-26 02:50:30] 2025-11-26 07:49:25,342 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:50:30] 2025-11-26 07:49:25,385 | INFO     | cat /etc/os-release:
[2025-11-26 02:50:30] NAME="CentOS Linux"
[2025-11-26 02:50:30] VERSION="7 (Core)"
[2025-11-26 02:50:30] ID="centos"
[2025-11-26 02:50:30] ID_LIKE="rhel fedora"
[2025-11-26 02:50:30] VERSION_ID="7"
[2025-11-26 02:50:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:50:30] ANSI_COLOR="0;31"
[2025-11-26 02:50:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:50:30] HOME_URL="https://www.centos.org/"
[2025-11-26 02:50:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:50:30] 
[2025-11-26 02:50:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:50:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:50:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:50:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:50:30] 
[2025-11-26 02:50:30] 2025-11-26 07:49:25,385 | INFO     | ***************************************
[2025-11-26 02:50:30] 2025-11-26 07:49:25,889 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 02:50:30] 2025-11-26 07:49:25,945 | INFO     | sufficient remaining disk space (68721573888 B)
[2025-11-26 02:50:30] 2025-11-26 07:49:25,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:50:30] 2025-11-26 07:49:25,945 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:50:30] 2025-11-26 07:49:25,945 | INFO     | update_server=False
[2025-11-26 02:50:30] 2025-11-26 07:49:25,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:50:30] 2025-11-26 07:49:25,946 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:50:30] 2025-11-26 07:49:26,057 | INFO     | all data control threads have been joined
[2025-11-26 02:50:30] 2025-11-26 07:49:26,148 | INFO     | all payload control threads have been joined
[2025-11-26 02:50:30] 2025-11-26 07:49:26,172 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:50:30] 2025-11-26 07:49:26,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:50:30] 2025-11-26 07:49:26,456 | INFO     | aborting loop
[2025-11-26 02:50:30] 2025-11-26 07:49:26,950 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,063 | INFO     | [data] control thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,086 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,154 | INFO     | [payload] control thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,368 | INFO     | all job control threads have been joined
[2025-11-26 02:50:30] 2025-11-26 07:49:27,379 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,379 | INFO     | [job] validate thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,380 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,462 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:27,919 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:28,179 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:28,357 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:28,370 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:28,376 | INFO     | [job] control thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:28,401 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:28,569 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:50:30] 2025-11-26 07:49:29,577 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:29,955 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:50:30] 2025-11-26 07:49:57,237 | INFO     | PID=513557 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 02:50:30] 2025-11-26 07:49:57,237 | INFO     | .. there are 27 such processes running
[2025-11-26 02:50:30] 2025-11-26 07:49:57,237 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:50:30] 2025-11-26 07:49:57,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:50:30] 2025-11-26 07:49:57,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:50:30] 2025-11-26 07:50:23,918 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:50:30] 2025-11-26 07:50:23,940 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330313463616)>', '<ExcThread(monitor, started 140329533568768)>']
[2025-11-26 02:50:30] 2025-11-26 07:50:24,405 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:50:30] 2025-11-26 07:50:24,405 | INFO     | [monitor] control thread has ended
[2025-11-26 02:50:30] 2025-11-26 07:50:28,982 | INFO     | all workflow threads have been joined
[2025-11-26 02:50:30] 2025-11-26 07:50:28,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:50:30] 2025-11-26 07:50:28,982 | INFO     | traces error code: 0
[2025-11-26 02:50:30] 2025-11-26 07:50:28,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:50:30] 2025-11-26 07:50:29,619 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:50:30] 2025-11-26 07:50:29,636 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:50:30] 2025-11-26 07:50:29,669 [wrapper] pilotpid: 513557
[2025-11-26 02:50:30] 2025-11-26 07:50:29,701 [wrapper] Pilot exit status: 0
[2025-11-26 02:50:30] 2025-11-26 07:50:29,792 [wrapper] pandaids: 6895386568
[2025-11-26 02:50:30] 2025-11-26 07:50:29,922 [wrapper] cleanup supervisor_pilot  530057 513558
[2025-11-26 02:50:30] 2025-11-26 07:50:29,929 [wrapper] Test setup, not cleaning
[2025-11-26 02:50:30] 2025-11-26 07:50:29,935 [wrapper] apfmon messages muted
[2025-11-26 02:50:30] 2025-11-26 07:50:29,937 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:50:30] 2025-11-26 07:50:29,939 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:50:30]  *** Error codes and diagnostics ***
[2025-11-26 02:50:30]     "exeErrorCode": 0,
[2025-11-26 02:50:30]     "exeErrorDiag": "",
[2025-11-26 02:50:30]     "pilotErrorCode": 0,
[2025-11-26 02:50:30]     "pilotErrorDiag": "",
[2025-11-26 02:50:30]  *** Listing of results directory ***
[2025-11-26 02:50:30] total 1317880
[2025-11-26 02:50:30] -rwx------. 1 boincer umatlas     36292 Nov 24 00:37 runpilot2-wrapper.sh
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:37 queuedata.json
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:50:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:55 run_atlas
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:55 job.xml
[2025-11-26 02:50:30] -rw-r--r--. 2 boincer umatlas 408788400 Nov 24 23:55 EVNT.47483658._001247.pool.root.1
[2025-11-26 02:50:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:55 start_atlas.sh
[2025-11-26 02:50:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:55 shared
[2025-11-26 02:50:30] -rw-r--r--. 2 boincer umatlas    590093 Nov 24 23:55 input.tar.gz
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:55 boinc_lockfile
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 23:55 pandaJob.out
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas        57 Nov 24 23:55 setup.sh.local
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas    991801 Nov 24 23:56 agis_schedconf.cvmfs.json
[2025-11-26 02:50:30] drwx------. 5 boincer umatlas      4096 Nov 24 23:56 pilot3
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas       533 Nov 26 02:08 boinc_task_state.xml
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas      6840 Nov 26 02:45 init_data.xml
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas 906078126 Nov 26 02:47 HITS.47556149._002339.pool.root.1
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas      1058 Nov 26 02:48 memory_monitor_summary.json
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 02:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas   2917136 Nov 26 02:49 log.47556149._002339.job.log.tgz.1
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas        95 Nov 26 02:49 pilot_heartbeat.json
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas      8617 Nov 26 02:49 heartbeat.json
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas      4823 Nov 26 02:50 pilotlog.txt
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas  12445667 Nov 26 02:50 log.47556149._002339.job.log.1
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 02:50 boinc_mmap_file
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas       353 Nov 26 02:50 output.list
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas        29 Nov 26 02:50 wrapper_checkpoint.txt
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 02:50 runtime_log
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas  15380480 Nov 26 02:50 result.tar.gz
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas      9345 Nov 26 02:50 runtime_log.err
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas       661 Nov 26 02:50 EJ8KDm0Reh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmewIKDmLAvK2n.diag
[2025-11-26 02:50:30] -rw-r--r--. 1 boincer umatlas     21365 Nov 26 02:50 stderr.txt
[2025-11-26 02:50:30] HITS file was successfully produced:
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas 906078126 Nov 26 02:47 shared/HITS.pool.root.1
[2025-11-26 02:50:30]  *** Contents of shared directory: ***
[2025-11-26 02:50:30] total 1299672
[2025-11-26 02:50:30] -rw-r--r--. 2 boincer umatlas 408788400 Nov 24 23:55 ATLAS.root_0
[2025-11-26 02:50:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:55 start_atlas.sh
[2025-11-26 02:50:30] -rw-r--r--. 2 boincer umatlas    590093 Nov 24 23:55 input.tar.gz
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas 906078126 Nov 26 02:47 HITS.pool.root.1
[2025-11-26 02:50:30] -rw-------. 1 boincer umatlas  15380480 Nov 26 02:50 result.tar.gz
02:50:32 (509047): run_atlas exited; CPU time 254597.512864
02:50:32 (509047): called boinc_finish(0)

</stderr_txt>
]]>

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