Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:27 (1298836): wrapper (7.7.26015): starting
00:01:27 (1298836): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:01:27] Arguments: --nthreads 9
[2025-11-25 00:01:27] Threads: 9
[2025-11-25 00:01:27] Checking for CVMFS
[2025-11-25 00:01:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:29] 2.13.3.0 13693 28161 351640 153270 2 396 32138374 40960000 23195 16776704 0 77967483 99.602 83513970 37442 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:01:29] CVMFS is ok
[2025-11-25 00:01:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:29] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:29] Checking for apptainer binary...
[2025-11-25 00:01:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:29] Running /usr/bin/apptainer --version
[2025-11-25 00:01:29] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:29] c6-5-37-3.aglt2.org
[2025-11-25 00:01:29] apptainer works
[2025-11-25 00:01:29] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:01:29] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:01:29] Starting ATLAS job with PandaID=6895386434
[2025-11-25 00:01:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:48:47]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:48:47] 2025-11-26 06:18:08,207 | INFO     | monitor loop #6177: job 0:6895386434 is in state 'finished'
[2025-11-26 03:48:47] 2025-11-26 06:18:08,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:48:47] 2025-11-26 06:18:08,805 | INFO     | time since job start (90958s) is within the limit (172800.0s)
[2025-11-26 03:48:47] 2025-11-26 06:18:10,733 | INFO     | monitor loop #6178: job 0:6895386434 is in state 'finished'
[2025-11-26 03:48:47] 2025-11-26 06:18:10,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:48:47] 2025-11-26 06:18:10,821 | INFO     | time since job start (90960s) is within the limit (172800.0s)
[2025-11-26 03:48:47] 2025-11-26 06:18:12,852 | INFO     | time since job start (90962s) is within the limit (172800.0s)
[2025-11-26 03:48:47] 2025-11-26 06:18:13,243 | INFO     | monitor loop #6179: job 0:6895386434 is in state 'finished'
[2025-11-26 03:48:47] 2025-11-26 06:18:13,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:48:47] 2025-11-26 06:18:14,858 | INFO     | time since job start (90964s) is within the limit (172800.0s)
[2025-11-26 03:48:47] 2025-11-26 06:18:15,783 | INFO     | monitor loop #6180: job 0:6895386434 is in state 'finished'
[2025-11-26 03:48:47] 2025-11-26 06:18:15,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:48:47] 2025-11-26 06:18:16,876 | INFO     | time since job start (90966s) is within the limit (172800.0s)
[2025-11-26 03:48:47] 2025-11-26 06:18:16,877 | INFO     | 90969s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 03:48:47] 2025-11-26 06:18:18,310 | INFO     | monitor loop #6181: job 0:6895386434 is in state 'finished'
[2025-11-26 03:48:47] 2025-11-26 06:18:18,310 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:48:47] 2025-11-26 06:18:18,886 | INFO     | time since job start (90968s) is within the limit (172800.0s)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,198 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 03:48:47] 2025-11-26 06:18:19,210 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3085.485535714284
[2025-11-26 03:48:47] 2025-11-26 06:18:19,226 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895386434/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,227 | INFO     | extracted standard info from prmon json
[2025-11-26 03:48:47] 2025-11-26 06:18:19,228 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:48:47] 2025-11-26 06:18:19,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:48:47] 2025-11-26 06:18:19,249 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:48:47] 2025-11-26 06:18:19,251 | INFO     | sum of square deviations: 1025726039749.6296
[2025-11-26 03:48:47] 2025-11-26 06:18:19,287 | INFO     | sum of deviations: 4641848061800.163
[2025-11-26 03:48:47] 2025-11-26 06:18:19,287 | INFO     | mean x: 1764092437.524161
[2025-11-26 03:48:47] 2025-11-26 06:18:19,287 | INFO     | mean y: 3043033.6617449666
[2025-11-26 03:48:47] 2025-11-26 06:18:19,287 | INFO     | intersect: -7980228078.336763
[2025-11-26 03:48:47] 2025-11-26 06:18:19,289 | INFO     | chi2: 19.442426537988144
[2025-11-26 03:48:47] 2025-11-26 06:18:19,290 | INFO     | sum of square deviations: 1015434879651.8679
[2025-11-26 03:48:47] 2025-11-26 06:18:19,326 | INFO     | sum of deviations: 5185386225678.209
[2025-11-26 03:48:47] 2025-11-26 06:18:19,326 | INFO     | mean x: 1764092285.0276093
[2025-11-26 03:48:47] 2025-11-26 06:18:19,326 | INFO     | mean y: 3051086.824242424
[2025-11-26 03:48:47] 2025-11-26 06:18:19,326 | INFO     | intersect: -9005404323.67288
[2025-11-26 03:48:47] 2025-11-26 06:18:19,328 | INFO     | chi2: 15.92771832946575
[2025-11-26 03:48:47] 2025-11-26 06:18:19,328 | INFO     | current chi2=15.92771832946575 (change=18.077518264785937 %)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,328 | INFO     | right removable region: 1484
[2025-11-26 03:48:47] 2025-11-26 06:18:19,330 | INFO     | sum of square deviations: 1015433948791.8666
[2025-11-26 03:48:47] 2025-11-26 06:18:19,395 | INFO     | sum of deviations: 4090404531328.0093
[2025-11-26 03:48:47] 2025-11-26 06:18:19,396 | INFO     | mean x: 1764092590.0276093
[2025-11-26 03:48:47] 2025-11-26 06:18:19,396 | INFO     | mean y: 3051201.6094276095
[2025-11-26 03:48:47] 2025-11-26 06:18:19,396 | INFO     | intersect: -7103124766.326552
[2025-11-26 03:48:47] 2025-11-26 06:18:19,398 | INFO     | chi2: 16.334576582279354
[2025-11-26 03:48:47] 2025-11-26 06:18:19,398 | INFO     | current chi2=16.334576582279354 (change=15.984887224012024 %)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,398 | INFO     | left removable region: 10
[2025-11-26 03:48:47] 2025-11-26 06:18:19,400 | INFO     | sum of square deviations: 993036080489.2446
[2025-11-26 03:48:47] 2025-11-26 06:18:19,480 | INFO     | sum of deviations: 4595347504984.954
[2025-11-26 03:48:47] 2025-11-26 06:18:19,480 | INFO     | mean x: 1764092559.5291724
[2025-11-26 03:48:47] 2025-11-26 06:18:19,480 | INFO     | mean y: 3063415.710312076
[2025-11-26 03:48:47] 2025-11-26 06:18:19,480 | INFO     | intersect: -8160404660.898718
[2025-11-26 03:48:47] 2025-11-26 06:18:19,482 | INFO     | chi2: 11.884993634534164
[2025-11-26 03:48:47] 2025-11-26 06:18:19,482 | INFO     | current memory leak: 4.63 B/s (using 1474 data points, chi2=11.88)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,483 | INFO     | could have reported an average CPU frequency of 2962 MHz (53 samples)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,483 | INFO     | ..............................
[2025-11-26 03:48:47] 2025-11-26 06:18:19,483 | INFO     | . Timing measurements:
[2025-11-26 03:48:47] 2025-11-26 06:18:19,483 | INFO     | . get job = 0 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,483 | INFO     | . initial setup = 3 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,484 | INFO     | . payload setup = 32 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,484 | INFO     | . stage-in = 0 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,484 | INFO     | . payload execution = 90850 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,484 | INFO     | . stage-out = 9 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,484 | INFO     | . log creation = 4 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,484 | INFO     | ..............................
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | 
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | job summary report
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | --------------------------------------------------
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | PanDA job id: 6895386434
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | task id: 47556149
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | errors: (none)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | pilot state: finished 
[2025-11-26 03:48:47] 2025-11-26 06:18:19,734 | INFO     | transexitcode: 0
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | exeerrorcode: 0
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | exeerrordiag: 
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | exitcode: 0
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | exitmsg: OK
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | cpuconsumptiontime: 253105 s
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | nevents: 1000
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | neventsw: 0
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | pid: 1322207
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | pgrp: 1322207
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | corecount: 9
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | event service: False
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | sizes: {0: 2284309, 11: 2284309, 19: 2284599, 22: 2284627, 90883: 2353265, 90895: 2362448, 90929: 2362734}
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | --------------------------------------------------
[2025-11-26 03:48:47] 2025-11-26 06:18:19,735 | INFO     | 
[2025-11-26 03:48:47] 2025-11-26 06:18:19,736 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 03:48:47] 2025-11-26 06:18:19,806 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,807 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | job 6895386434 has completed (purged errors)
[2025-11-26 03:48:47] 2025-11-26 06:18:19,808 | INFO     | overall cleanup function is called
[2025-11-26 03:48:47] 2025-11-26 06:18:20,836 | INFO     | --- collectZombieJob: --- 10, [1322207]
[2025-11-26 03:48:47] 2025-11-26 06:18:20,836 | INFO     | zombie collector waiting for pid 1322207
[2025-11-26 03:48:47] 2025-11-26 06:18:20,836 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:48:47] 2025-11-26 06:18:20,837 | INFO     | collected zombie processes
[2025-11-26 03:48:47] 2025-11-26 06:18:20,837 | INFO     | will attempt to kill all subprocesses of pid=1322207
[2025-11-26 03:48:47] 2025-11-26 06:18:21,573 | INFO     | process IDs to be killed: [1322207] (in reverse order)
[2025-11-26 03:48:47] 2025-11-26 06:18:21,922 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:48:47] 2025-11-26 06:18:21,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:48:47] 2025-11-26 06:18:21,952 | INFO     | did not find any defunct processes belonging to 1322207
[2025-11-26 03:48:47] 2025-11-26 06:18:21,979 | INFO     | did not find any defunct processes belonging to 1322207
[2025-11-26 03:48:47] 2025-11-26 06:18:21,982 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:48:47] 2025-11-26 06:18:21,982 | INFO     | ready for new job
[2025-11-26 03:48:47] 2025-11-26 06:18:21,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:48:47] 2025-11-26 06:18:22,011 | INFO     | ***************************************
[2025-11-26 03:48:47] 2025-11-26 06:18:22,011 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:48:47] 2025-11-26 06:18:22,011 | INFO     | ***************************************
[2025-11-26 03:48:47] 2025-11-26 06:18:22,011 | INFO     | 
[2025-11-26 03:48:47] 2025-11-26 06:18:22,015 | INFO     | architecture information:
[2025-11-26 03:48:47] 2025-11-26 06:18:22,019 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:48:47] 2025-11-26 06:18:22,082 | INFO     | cat /etc/os-release:
[2025-11-26 03:48:47] NAME="CentOS Linux"
[2025-11-26 03:48:47] VERSION="7 (Core)"
[2025-11-26 03:48:47] ID="centos"
[2025-11-26 03:48:47] ID_LIKE="rhel fedora"
[2025-11-26 03:48:47] VERSION_ID="7"
[2025-11-26 03:48:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:48:47] ANSI_COLOR="0;31"
[2025-11-26 03:48:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:48:47] HOME_URL="https://www.centos.org/"
[2025-11-26 03:48:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:48:47] 
[2025-11-26 03:48:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:48:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:48:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:48:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:48:47] 
[2025-11-26 03:48:47] 2025-11-26 06:18:22,083 | INFO     | ***************************************
[2025-11-26 03:48:47] 2025-11-26 06:18:22,586 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 03:48:47] 2025-11-26 06:18:22,617 | INFO     | sufficient remaining disk space (68369252352 B)
[2025-11-26 03:48:47] 2025-11-26 06:18:22,618 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:48:47] 2025-11-26 06:18:22,618 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:48:47] 2025-11-26 06:18:22,618 | INFO     | update_server=False
[2025-11-26 03:48:47] 2025-11-26 06:18:22,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:48:47] 2025-11-26 06:18:22,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:48:47] 2025-11-26 06:18:22,619 | INFO     | aborting loop
[2025-11-26 03:48:47] 2025-11-26 06:18:22,809 | INFO     | all data control threads have been joined
[2025-11-26 03:48:47] 2025-11-26 06:18:23,360 | INFO     | all job control threads have been joined
[2025-11-26 03:48:47] 2025-11-26 06:18:23,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:48:47] 2025-11-26 06:18:23,624 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:23,626 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:23,671 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:23,731 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:23,815 | INFO     | [data] control thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:23,855 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:48:47] 2025-11-26 06:18:23,976 | INFO     | all payload control threads have been joined
[2025-11-26 03:48:47] 2025-11-26 06:18:24,100 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:24,366 | INFO     | [job] control thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:24,401 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:24,430 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:24,431 | INFO     | [job] validate thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:24,431 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:24,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:48:47] 2025-11-26 06:18:24,925 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:24,982 | INFO     | [payload] control thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:25,753 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:25,865 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:27,429 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:48:47] 2025-11-26 06:18:47,949 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:48:47] 2025-11-26 06:18:49,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082004817728)>', '<ExcThread(monitor, started 140081650177792)>']
[2025-11-26 03:48:47] 2025-11-26 06:18:52,533 | INFO     | PID=1303991 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 03:48:47] 2025-11-26 06:18:52,533 | INFO     | .. there are 31 such processes running
[2025-11-26 03:48:47] 2025-11-26 06:18:52,534 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:48:47] 2025-11-26 06:18:52,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:48:47] 2025-11-26 06:18:52,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:48:47] 2025-11-26 06:18:52,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:48:47] 2025-11-26 06:18:52,534 | INFO     | [monitor] control thread has ended
[2025-11-26 03:48:47] 2025-11-26 06:18:54,112 | INFO     | all workflow threads have been joined
[2025-11-26 03:48:47] 2025-11-26 06:18:54,112 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:48:47] 2025-11-26 06:18:54,113 | INFO     | traces error code: 0
[2025-11-26 03:48:47] 2025-11-26 06:18:54,113 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:48:47] 2025-11-26 06:18:54,382 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:48:47] 2025-11-26 06:18:54,398 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:48:47] 2025-11-26 06:18:54,416 [wrapper] pilotpid: 1303991
[2025-11-26 03:48:47] 2025-11-26 06:18:54,425 [wrapper] Pilot exit status: 0
[2025-11-26 03:48:47] 2025-11-26 06:18:54,565 [wrapper] pandaids: 6895386434
[2025-11-26 03:48:47] 2025-11-26 06:18:54,928 [wrapper] cleanup supervisor_pilot 1589927 1303993
[2025-11-26 03:48:47] 2025-11-26 06:18:54,946 [wrapper] Test setup, not cleaning
[2025-11-26 03:48:47] 2025-11-26 06:18:54,996 [wrapper] apfmon messages muted
[2025-11-26 03:48:47] 2025-11-26 06:18:55,040 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:48:47] 2025-11-26 06:18:55,068 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:48:47]  *** Error codes and diagnostics ***
[2025-11-26 03:48:47]     "exeErrorCode": 0,
[2025-11-26 03:48:47]     "exeErrorDiag": "",
[2025-11-26 03:48:47]     "pilotErrorCode": 0,
[2025-11-26 03:48:47]     "pilotErrorDiag": "",
[2025-11-26 03:48:47]  *** Listing of results directory ***
[2025-11-26 03:48:47] total 1332332
[2025-11-26 03:48:47] -rwx------. 1 boincer umatlas     36292 Nov 24 00:14 runpilot2-wrapper.sh
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:14 queuedata.json
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:48:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-26 03:48:47] -rw-r--r--. 2 boincer umatlas 412636832 Nov 25 00:01 EVNT.47483658._001242.pool.root.1
[2025-11-26 03:48:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 03:48:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-26 03:48:47] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:01 input.tar.gz
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:01 pandaJob.out
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas        57 Nov 25 00:01 setup.sh.local
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-26 03:48:47] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas       533 Nov 26 00:38 boinc_task_state.xml
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas 917714898 Nov 26 01:16 HITS.47556149._002287.pool.root.1
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas      1063 Nov 26 01:17 memory_monitor_summary.json
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas   1516240 Nov 26 01:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas   2667729 Nov 26 01:17 log.47556149._002287.job.log.tgz.1
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas      8628 Nov 26 01:18 heartbeat.json
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas        95 Nov 26 01:18 pilot_heartbeat.json
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas      4824 Nov 26 01:18 pilotlog.txt
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas  12349781 Nov 26 01:18 log.47556149._002287.job.log.1
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas       353 Nov 26 01:18 output.list
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas       620 Nov 26 01:18 runtime_log
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas  15032320 Nov 26 01:18 result.tar.gz
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 01:18 runtime_log.err
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas       662 Nov 26 01:18 3AENDmn5dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJwIKDmittydn.diag
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 03:48 init_data.xml
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:48 boinc_mmap_file
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas        29 Nov 26 03:48 wrapper_checkpoint.txt
[2025-11-26 03:48:47] -rw-r--r--. 1 boincer umatlas     21778 Nov 26 03:48 stderr.txt
[2025-11-26 03:48:47] HITS file was successfully produced:
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas 917714898 Nov 26 01:16 shared/HITS.pool.root.1
[2025-11-26 03:48:47]  *** Contents of shared directory: ***
[2025-11-26 03:48:47] total 1314460
[2025-11-26 03:48:47] -rw-r--r--. 2 boincer umatlas 412636832 Nov 25 00:01 ATLAS.root_0
[2025-11-26 03:48:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 03:48:47] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:01 input.tar.gz
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas 917714898 Nov 26 01:16 HITS.pool.root.1
[2025-11-26 03:48:47] -rw-------. 1 boincer umatlas  15032320 Nov 26 01:18 result.tar.gz
03:48:49 (1298836): run_atlas exited; CPU time 254506.429216
03:48:49 (1298836): called boinc_finish(0)

</stderr_txt>
]]>

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