Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:29 (4107845): wrapper (7.7.26015): starting
00:00:29 (4107845): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:00:29] Arguments: --nthreads 12
[2025-11-25 00:00:29] Threads: 12
[2025-11-25 00:00:29] Checking for CVMFS
[2025-11-25 00:00:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:30] 2.13.2.0 6902 33223 239272 153270 1 490 21348345 40960000 25701 16776704 0 111457590 99.601 117953538 40152 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:00:30] CVMFS is ok
[2025-11-25 00:00:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:30] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:30] Checking for apptainer binary...
[2025-11-25 00:00:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:30] Running /usr/bin/apptainer --version
[2025-11-25 00:00:30] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:30] c-212-6.aglt2.org
[2025-11-25 00:00:30] apptainer works
[2025-11-25 00:00:30] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:00:30] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:00:30] Starting ATLAS job with PandaID=6895385187
[2025-11-25 00:00:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:07 (4107845): BOINC client no longer exists - exiting
19:20:07 (4107845): timer handler: client dead, exiting
19:28:46 (3746690): wrapper (7.7.26015): starting
19:28:46 (3746690): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:28:46] Arguments: --nthreads 8
[2025-11-25 19:28:46] Threads: 8
[2025-11-25 19:28:46] This job has been restarted, cleaning up previous attempt
[2025-11-25 19:28:46] Checking for CVMFS
[2025-11-25 19:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:28:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:28:46] 2.13.2.0 6902 34392 216088 153303 0 160 35059257 40960000 21600 16776704 0 117304382 99.606 122086723 39922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 19:28:46] CVMFS is ok
[2025-11-25 19:28:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:28:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:28:46] Further information can be found at the LHC@home message board.
[2025-11-25 19:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:28:46] Checking for apptainer binary...
[2025-11-25 19:28:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:28:46] Running /usr/bin/apptainer --version
[2025-11-25 19:28:46] apptainer version 1.4.4-1.el9
[2025-11-25 19:28:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:28:47] c-212-6.aglt2.org
[2025-11-25 19:28:47] apptainer works
[2025-11-25 19:28:47] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:28:47] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:28:47] Starting ATLAS job with PandaID=6895385187
[2025-11-25 19:28:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:21:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:21:43] 2025-11-27 10:21:03,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:21:43] 2025-11-27 10:21:03,855 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:21:43] 2025-11-27 10:21:03,863 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2905.894427083333
[2025-11-27 05:21:43] 2025-11-27 10:21:03,879 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895385187/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:21:43] 2025-11-27 10:21:03,880 | INFO     | extracted standard info from prmon json
[2025-11-27 05:21:43] 2025-11-27 10:21:03,880 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:21:43] 2025-11-27 10:21:03,881 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:21:43] 2025-11-27 10:21:03,908 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:21:43] 2025-11-27 10:21:03,911 | INFO     | sum of square deviations: 2473180560849.2803
[2025-11-27 05:21:43] 2025-11-27 10:21:04,012 | INFO     | sum of deviations: 7150660667305.996
[2025-11-27 05:21:43] 2025-11-27 10:21:04,012 | INFO     | mean x: 1764177878.8228228
[2025-11-27 05:21:43] 2025-11-27 10:21:04,012 | INFO     | mean y: 2936316.031031031
[2025-11-27 05:21:43] 2025-11-27 10:21:04,012 | INFO     | intersect: -5097798166.492044
[2025-11-27 05:21:43] 2025-11-27 10:21:04,014 | INFO     | chi2: 8.793248850661548
[2025-11-27 05:21:43] 2025-11-27 10:21:04,017 | INFO     | sum of square deviations: 2454660596499.738
[2025-11-27 05:21:43] 2025-11-27 10:21:04,099 | INFO     | sum of deviations: 7869838238257.419
[2025-11-27 05:21:43] 2025-11-27 10:21:04,099 | INFO     | mean x: 1764177726.3286502
[2025-11-27 05:21:43] 2025-11-27 10:21:04,099 | INFO     | mean y: 2942237.866532865
[2025-11-27 05:21:43] 2025-11-27 10:21:04,099 | INFO     | intersect: -5653152681.952956
[2025-11-27 05:21:43] 2025-11-27 10:21:04,101 | INFO     | chi2: 5.35543693771303
[2025-11-27 05:21:43] 2025-11-27 10:21:04,101 | INFO     | current chi2=5.35543693771303 (change=39.09603800977246 %)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,103 | INFO     | sum of square deviations: 2436233331562.5483
[2025-11-27 05:21:43] 2025-11-27 10:21:04,182 | INFO     | sum of deviations: 8391585067945.322
[2025-11-27 05:21:43] 2025-11-27 10:21:04,182 | INFO     | mean x: 1764177573.834507
[2025-11-27 05:21:43] 2025-11-27 10:21:04,182 | INFO     | mean y: 2946553.5055331993
[2025-11-27 05:21:43] 2025-11-27 10:21:04,182 | INFO     | intersect: -6073748151.388979
[2025-11-27 05:21:43] 2025-11-27 10:21:04,184 | INFO     | chi2: 3.258776393530876
[2025-11-27 05:21:43] 2025-11-27 10:21:04,184 | INFO     | current chi2=3.258776393530876 (change=39.15013039211523 %)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,186 | INFO     | sum of square deviations: 2417898412454.9165
[2025-11-27 05:21:43] 2025-11-27 10:21:04,265 | INFO     | sum of deviations: 8520462216682.112
[2025-11-27 05:21:43] 2025-11-27 10:21:04,266 | INFO     | mean x: 1764177421.339889
[2025-11-27 05:21:43] 2025-11-27 10:21:04,266 | INFO     | mean y: 2947623.5562279373
[2025-11-27 05:21:43] 2025-11-27 10:21:04,266 | INFO     | intersect: -6213859081.233517
[2025-11-27 05:21:43] 2025-11-27 10:21:04,268 | INFO     | chi2: 2.914226803039282
[2025-11-27 05:21:43] 2025-11-27 10:21:04,268 | INFO     | current chi2=2.914226803039282 (change=10.572974297210845 %)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,268 | INFO     | right removable region: 1982
[2025-11-27 05:21:43] 2025-11-27 10:21:04,270 | INFO     | sum of square deviations: 2454657765489.7314
[2025-11-27 05:21:43] 2025-11-27 10:21:04,357 | INFO     | sum of deviations: 6647471220517.378
[2025-11-27 05:21:43] 2025-11-27 10:21:04,357 | INFO     | mean x: 1764178031.3286502
[2025-11-27 05:21:43] 2025-11-27 10:21:04,357 | INFO     | mean y: 2940456.0055193175
[2025-11-27 05:21:43] 2025-11-27 10:21:04,357 | INFO     | intersect: -4774639073.003274
[2025-11-27 05:21:43] 2025-11-27 10:21:04,359 | INFO     | chi2: 6.894880745519073
[2025-11-27 05:21:43] 2025-11-27 10:21:04,359 | INFO     | current chi2=6.894880745519073 (change=21.58892733940601 %)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,359 | INFO     | left removable region: 10
[2025-11-27 05:21:43] 2025-11-27 10:21:04,361 | INFO     | sum of square deviations: 2377881376763.669
[2025-11-27 05:21:43] 2025-11-27 10:21:04,439 | INFO     | sum of deviations: 7810370204298.203
[2025-11-27 05:21:43] 2025-11-27 10:21:04,439 | INFO     | mean x: 1764177695.8483772
[2025-11-27 05:21:43] 2025-11-27 10:21:04,439 | INFO     | mean y: 2953423.830121704
[2025-11-27 05:21:43] 2025-11-27 10:21:04,439 | INFO     | intersect: -5791650564.992433
[2025-11-27 05:21:43] 2025-11-27 10:21:04,441 | INFO     | chi2: 0.8625529389349882
[2025-11-27 05:21:43] 2025-11-27 10:21:04,441 | INFO     | current memory leak: 3.28 B/s (using 1972 data points, chi2=0.86)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | could have reported an average CPU frequency of 3071 MHz (70 samples)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | ..............................
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . Timing measurements:
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . get job = 0 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . initial setup = 2 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . payload setup = 7 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . stage-in = 0 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . payload execution = 121863 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . stage-out = 8 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | . log creation = 1 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,443 | INFO     | ..............................
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | 
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | job summary report
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | --------------------------------------------------
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | PanDA job id: 6895385187
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | task id: 47556161
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | errors: (none)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | pilot state: finished 
[2025-11-27 05:21:43] 2025-11-27 10:21:04,530 | INFO     | transexitcode: 0
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | exeerrorcode: 0
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | exeerrordiag: 
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | exitcode: 0
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | exitmsg: OK
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | cpuconsumptiontime: 215088 s
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | nevents: 1000
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | neventsw: 0
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | pid: 3798766
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | pgrp: 3798766
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | corecount: 8
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | event service: False
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | sizes: {0: 2283432, 1: 2284288, 5: 2284550, 12: 2284606, 121876: 2366072, 121877: 2366071, 121887: 2375249, 121890: 2375305, 121911: 2375551}
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | --------------------------------------------------
[2025-11-27 05:21:43] 2025-11-27 10:21:04,531 | INFO     | 
[2025-11-27 05:21:43] 2025-11-27 10:21:04,532 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 05:21:43] 2025-11-27 10:21:04,557 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,559 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,559 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,559 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,559 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,559 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:21:43] 2025-11-27 10:21:04,559 | INFO     | job 6895385187 has completed (purged errors)
[2025-11-27 05:21:43] 2025-11-27 10:21:04,559 | INFO     | overall cleanup function is called
[2025-11-27 05:21:43] 2025-11-27 10:21:05,603 | INFO     | --- collectZombieJob: --- 10, [3798766]
[2025-11-27 05:21:43] 2025-11-27 10:21:05,603 | INFO     | zombie collector waiting for pid 3798766
[2025-11-27 05:21:43] 2025-11-27 10:21:05,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:21:43] 2025-11-27 10:21:05,604 | INFO     | collected zombie processes
[2025-11-27 05:21:43] 2025-11-27 10:21:05,604 | INFO     | will attempt to kill all subprocesses of pid=3798766
[2025-11-27 05:21:43] 2025-11-27 10:21:07,403 | INFO     | process IDs to be killed: [3798766] (in reverse order)
[2025-11-27 05:21:43] 2025-11-27 10:21:07,568 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:21:43] 2025-11-27 10:21:07,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:21:43] 2025-11-27 10:21:07,587 | INFO     | did not find any defunct processes belonging to 3798766
[2025-11-27 05:21:43] 2025-11-27 10:21:07,605 | INFO     | did not find any defunct processes belonging to 3798766
[2025-11-27 05:21:43] 2025-11-27 10:21:07,607 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:21:43] 2025-11-27 10:21:07,607 | INFO     | ready for new job
[2025-11-27 05:21:43] 2025-11-27 10:21:07,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:21:43] 2025-11-27 10:21:07,615 | INFO     | ***************************************
[2025-11-27 05:21:43] 2025-11-27 10:21:07,615 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:21:43] 2025-11-27 10:21:07,615 | INFO     | ***************************************
[2025-11-27 05:21:43] 2025-11-27 10:21:07,615 | INFO     | 
[2025-11-27 05:21:43] 2025-11-27 10:21:07,620 | INFO     | architecture information:
[2025-11-27 05:21:43] 2025-11-27 10:21:07,625 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:21:43] 2025-11-27 10:21:07,725 | INFO     | cat /etc/os-release:
[2025-11-27 05:21:43] NAME="CentOS Linux"
[2025-11-27 05:21:43] VERSION="7 (Core)"
[2025-11-27 05:21:43] ID="centos"
[2025-11-27 05:21:43] ID_LIKE="rhel fedora"
[2025-11-27 05:21:43] VERSION_ID="7"
[2025-11-27 05:21:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:21:43] ANSI_COLOR="0;31"
[2025-11-27 05:21:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:21:43] HOME_URL="https://www.centos.org/"
[2025-11-27 05:21:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:21:43] 
[2025-11-27 05:21:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:21:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:21:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:21:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:21:43] 
[2025-11-27 05:21:43] 2025-11-27 10:21:07,725 | INFO     | ***************************************
[2025-11-27 05:21:43] 2025-11-27 10:21:08,229 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 05:21:43] 2025-11-27 10:21:08,287 | INFO     | sufficient remaining disk space (121176588288 B)
[2025-11-27 05:21:43] 2025-11-27 10:21:08,287 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:21:43] 2025-11-27 10:21:08,287 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:21:43] 2025-11-27 10:21:08,287 | INFO     | update_server=False
[2025-11-27 05:21:43] 2025-11-27 10:21:08,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:21:43] 2025-11-27 10:21:08,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:21:43] 2025-11-27 10:21:08,442 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:21:43] 2025-11-27 10:21:08,442 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:21:43] 2025-11-27 10:21:08,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:21:43] 2025-11-27 10:21:08,442 | INFO     | will abort loop
[2025-11-27 05:21:43] 2025-11-27 10:21:09,293 | INFO     | all data control threads have been joined
[2025-11-27 05:21:43] 2025-11-27 10:21:09,293 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:09,317 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:09,448 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:09,468 | INFO     | all job control threads have been joined
[2025-11-27 05:21:43] 2025-11-27 10:21:09,510 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:09,544 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:21:43] 2025-11-27 10:21:09,577 | INFO     | all payload control threads have been joined
[2025-11-27 05:21:43] 2025-11-27 10:21:10,231 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,234 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,261 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,286 | INFO     | [job] validate thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,297 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,300 | INFO     | [data] control thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,474 | INFO     | [job] control thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,507 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,552 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:10,584 | INFO     | [payload] control thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:11,704 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:21:43] 2025-11-27 10:21:15,716 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:21:43] 2025-11-27 10:21:33,783 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:21:43] 2025-11-27 10:21:35,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139814258579264)>', '<ExcThread(monitor, started 139813441226496)>']
[2025-11-27 05:21:43] 2025-11-27 10:21:37,329 | INFO     | PID=3757932 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:21:43] 2025-11-27 10:21:37,336 | INFO     | .. there are 25 such processes running
[2025-11-27 05:21:43] 2025-11-27 10:21:37,337 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:21:43] 2025-11-27 10:21:37,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:21:43] 2025-11-27 10:21:37,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:21:43] 2025-11-27 10:21:37,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:21:43] 2025-11-27 10:21:37,338 | INFO     | [monitor] control thread has ended
[2025-11-27 05:21:43] 2025-11-27 10:21:40,318 | INFO     | all workflow threads have been joined
[2025-11-27 05:21:43] 2025-11-27 10:21:40,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:21:43] 2025-11-27 10:21:40,319 | INFO     | traces error code: 0
[2025-11-27 05:21:43] 2025-11-27 10:21:40,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:21:43] 2025-11-27 10:21:41,197 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:21:43] 2025-11-27 10:21:41,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:21:43] 2025-11-27 10:21:41,255 [wrapper] pilotpid: 3757932
[2025-11-27 05:21:43] 2025-11-27 10:21:41,287 [wrapper] Pilot exit status: 0
[2025-11-27 05:21:43] 2025-11-27 10:21:41,437 [wrapper] pandaids: 6895385187 6895385187
[2025-11-27 05:21:43] 2025-11-27 10:21:41,757 [wrapper] cleanup supervisor_pilot 1849457 3757933
[2025-11-27 05:21:43] 2025-11-27 10:21:41,765 [wrapper] Test setup, not cleaning
[2025-11-27 05:21:43] 2025-11-27 10:21:41,769 [wrapper] apfmon messages muted
[2025-11-27 05:21:43] 2025-11-27 10:21:41,774 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:21:43] 2025-11-27 10:21:41,866 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:21:43]  *** Error codes and diagnostics ***
[2025-11-27 05:21:43]     "exeErrorCode": 0,
[2025-11-27 05:21:43]     "exeErrorDiag": "",
[2025-11-27 05:21:43]     "pilotErrorCode": 0,
[2025-11-27 05:21:43]     "pilotErrorDiag": "",
[2025-11-27 05:21:43]  *** Listing of results directory ***
[2025-11-27 05:21:43] total 1721828
[2025-11-27 05:21:43] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:07 queuedata.json
[2025-11-27 05:21:43] -rwx------. 1 boincer umatlas     36292 Nov 24 00:09 runpilot2-wrapper.sh
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:21:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-27 05:21:43] -rw-r--r--. 3 boincer umatlas 407822496 Nov 25 00:00 EVNT.47483658._002019.pool.root.1
[2025-11-27 05:21:43] -rw-r--r--. 3 boincer umatlas 407822496 Nov 25 00:00 ATLAS.root_0
[2025-11-27 05:21:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-27 05:21:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-27 05:21:43] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:00 input.tar.gz
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 19:28 pandaJob.out
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas        57 Nov 25 19:28 setup.sh.local
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas    991877 Nov 25 19:28 agis_schedconf.cvmfs.json
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas       534 Nov 27 05:06 boinc_task_state.xml
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas 907934714 Nov 27 05:19 HITS.47556161._000030.pool.root.1
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas      1067 Nov 27 05:20 memory_monitor_summary.json
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas   2826813 Nov 27 05:20 log.47556161._000030.job.log.tgz.1
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 05:20 init_data.xml
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas      8620 Nov 27 05:21 heartbeat.json
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas        96 Nov 27 05:21 pilot_heartbeat.json
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:21 boinc_mmap_file
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas        30 Nov 27 05:21 wrapper_checkpoint.txt
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas      5011 Nov 27 05:21 pilotlog.txt
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas  14993548 Nov 27 05:21 log.47556161._000030.job.log.1
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas       353 Nov 27 05:21 output.list
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:21 runtime_log
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas  17838080 Nov 27 05:21 result.tar.gz
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas      9424 Nov 27 05:21 runtime_log.err
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas       792 Nov 27 05:21 5THKDmD0dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0RLKDmBaUW9n.diag
[2025-11-27 05:21:43] -rw-r--r--. 1 boincer umatlas     23630 Nov 27 05:21 stderr.txt
[2025-11-27 05:21:43] HITS file was successfully produced:
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas 907934714 Nov 27 05:19 shared/HITS.pool.root.1
[2025-11-27 05:21:43]  *** Contents of shared directory: ***
[2025-11-27 05:21:43] total 1302948
[2025-11-27 05:21:43] -rw-r--r--. 3 boincer umatlas 407822496 Nov 25 00:00 ATLAS.root_0
[2025-11-27 05:21:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-27 05:21:43] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:00 input.tar.gz
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas 907934714 Nov 27 05:19 HITS.pool.root.1
[2025-11-27 05:21:43] -rw-------. 1 boincer umatlas  17838080 Nov 27 05:21 result.tar.gz
05:21:44 (3746690): run_atlas exited; CPU time 217029.865397
05:21:44 (3746690): called boinc_finish(0)

</stderr_txt>
]]>

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