Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:02:00 (2736964): wrapper (7.7.26015): starting
11:02:00 (2736964): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 11:02:00] Arguments: --nthreads 8
[2025-11-25 11:02:00] Threads: 8
[2025-11-25 11:02:00] Checking for CVMFS
[2025-11-25 11:02:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:02:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:02:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:02:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:02:03] 2.13.3.0 12257 28774 378304 153287 2 206 26851449 32935936 57653 16776704 0 275555278 99.781 149438139 29550 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 11:02:03] CVMFS is ok
[2025-11-25 11:02:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:02:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:02:03] Further information can be found at the LHC@home message board.
[2025-11-25 11:02:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:02:03] Checking for apptainer binary...
[2025-11-25 11:02:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:02:03] Running /usr/bin/apptainer --version
[2025-11-25 11:02:03] apptainer version 1.4.4-1.el9
[2025-11-25 11:02:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:02:04] c-1-3.aglt2.org
[2025-11-25 11:02:04] apptainer works
[2025-11-25 11:02:04] Set ATHENA_PROC_NUMBER=8
[2025-11-25 11:02:04] Set ATHENA_CORE_NUMBER=8
[2025-11-25 11:02:05] Starting ATLAS job with PandaID=6895366924
[2025-11-25 11:02:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:57:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:57:20] 2025-11-26 10:56:33,400 | INFO     | time since job start (68006s) is within the limit (172800.0s)
[2025-11-26 05:57:20] 2025-11-26 10:56:33,700 | INFO     | monitor loop #3685: job 0:6895366924 is in state 'finished'
[2025-11-26 05:57:20] 2025-11-26 10:56:33,700 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:57:20] 2025-11-26 10:56:35,410 | INFO     | time since job start (68008s) is within the limit (172800.0s)
[2025-11-26 05:57:20] 2025-11-26 10:56:36,208 | INFO     | monitor loop #3686: job 0:6895366924 is in state 'finished'
[2025-11-26 05:57:20] 2025-11-26 10:56:36,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:57:20] 2025-11-26 10:56:38,781 | INFO     | monitor loop #3687: job 0:6895366924 is in state 'finished'
[2025-11-26 05:57:20] 2025-11-26 10:56:38,781 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:57:20] 2025-11-26 10:56:38,802 | INFO     | PID=2742860 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:57:20] 2025-11-26 10:56:38,802 | INFO     | .. there are 86 such processes running
[2025-11-26 05:57:20] 2025-11-26 10:56:39,804 | INFO     | time since job start (68012s) is within the limit (172800.0s)
[2025-11-26 05:57:20] 2025-11-26 10:56:41,304 | INFO     | monitor loop #3688: job 0:6895366924 is in state 'finished'
[2025-11-26 05:57:20] 2025-11-26 10:56:41,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:57:20] 2025-11-26 10:56:41,826 | INFO     | time since job start (68014s) is within the limit (172800.0s)
[2025-11-26 05:57:20] 2025-11-26 10:56:43,832 | INFO     | monitor loop #3689: job 0:6895366924 is in state 'finished'
[2025-11-26 05:57:20] 2025-11-26 10:56:43,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:57:20] 2025-11-26 10:56:43,857 | INFO     | time since job start (68016s) is within the limit (172800.0s)
[2025-11-26 05:57:20] 2025-11-26 10:56:44,264 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 05:57:20] 2025-11-26 10:56:44,283 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2774.6668250000007
[2025-11-26 05:57:20] 2025-11-26 10:56:44,310 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895366924/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:57:20] 2025-11-26 10:56:44,311 | INFO     | extracted standard info from prmon json
[2025-11-26 05:57:20] 2025-11-26 10:56:44,311 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:57:20] 2025-11-26 10:56:44,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:57:20] 2025-11-26 10:56:44,330 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:57:20] 2025-11-26 10:56:44,331 | INFO     | sum of square deviations: 426373819595.89825
[2025-11-26 05:57:20] 2025-11-26 10:56:44,356 | INFO     | sum of deviations: 2577752846347.106
[2025-11-26 05:57:20] 2025-11-26 10:56:44,357 | INFO     | mean x: 1764120613.9685252
[2025-11-26 05:57:20] 2025-11-26 10:56:44,357 | INFO     | mean y: 2914957.4316546763
[2025-11-26 05:57:20] 2025-11-26 10:56:44,357 | INFO     | intersect: -10662531007.958282
[2025-11-26 05:57:20] 2025-11-26 10:56:44,358 | INFO     | chi2: 15.745491819341497
[2025-11-26 05:57:20] 2025-11-26 10:56:44,364 | INFO     | sum of square deviations: 420648666110.06665
[2025-11-26 05:57:20] 2025-11-26 10:56:44,413 | INFO     | sum of deviations: 2943927463755.056
[2025-11-26 05:57:20] 2025-11-26 10:56:44,413 | INFO     | mean x: 1764120461.475158
[2025-11-26 05:57:20] 2025-11-26 10:56:44,413 | INFO     | mean y: 2924708.7109304424
[2025-11-26 05:57:20] 2025-11-26 10:56:44,413 | INFO     | intersect: -12343346881.628664
[2025-11-26 05:57:20] 2025-11-26 10:56:44,415 | INFO     | chi2: 12.610514546087428
[2025-11-26 05:57:20] 2025-11-26 10:56:44,415 | INFO     | current chi2=12.610514546087428 (change=19.91031661140693 %)
[2025-11-26 05:57:20] 2025-11-26 10:56:44,415 | INFO     | right removable region: 1106
[2025-11-26 05:57:20] 2025-11-26 10:56:44,416 | INFO     | sum of square deviations: 420647669980.06696
[2025-11-26 05:57:20] 2025-11-26 10:56:44,549 | INFO     | sum of deviations: 2157419162622.609
[2025-11-26 05:57:20] 2025-11-26 10:56:44,550 | INFO     | mean x: 1764120766.475158
[2025-11-26 05:57:20] 2025-11-26 10:56:44,550 | INFO     | mean y: 2926149.367660343
[2025-11-26 05:57:20] 2025-11-26 10:56:44,550 | INFO     | intersect: -9044902279.004095
[2025-11-26 05:57:20] 2025-11-26 10:56:44,551 | INFO     | chi2: 12.244714828810991
[2025-11-26 05:57:20] 2025-11-26 10:56:44,551 | INFO     | current chi2=12.244714828810991 (change=22.233519477811484 %)
[2025-11-26 05:57:20] 2025-11-26 10:56:44,551 | INFO     | left removable region: 10
[2025-11-26 05:57:20] 2025-11-26 10:56:44,557 | INFO     | sum of square deviations: 408232451951.82135
[2025-11-26 05:57:20] 2025-11-26 10:56:44,603 | INFO     | sum of deviations: 2368588824329.8237
[2025-11-26 05:57:20] 2025-11-26 10:56:44,607 | INFO     | mean x: 1764120735.9872262
[2025-11-26 05:57:20] 2025-11-26 10:56:44,607 | INFO     | mean y: 2944374.772810219
[2025-11-26 05:57:20] 2025-11-26 10:56:44,607 | INFO     | intersect: -10232588444.94771
[2025-11-26 05:57:20] 2025-11-26 10:56:44,609 | INFO     | chi2: 7.379373222800122
[2025-11-26 05:57:20] 2025-11-26 10:56:44,609 | INFO     | current memory leak: 5.80 B/s (using 1096 data points, chi2=7.38)
[2025-11-26 05:57:20] 2025-11-26 10:56:44,610 | INFO     | could have reported an average CPU frequency of 2742 MHz (40 samples)
[2025-11-26 05:57:20] 2025-11-26 10:56:44,610 | INFO     | ..............................
[2025-11-26 05:57:20] 2025-11-26 10:56:44,610 | INFO     | . Timing measurements:
[2025-11-26 05:57:20] 2025-11-26 10:56:44,610 | INFO     | . get job = 0 s
[2025-11-26 05:57:20] 2025-11-26 10:56:44,611 | INFO     | . initial setup = 3 s
[2025-11-26 05:57:20] 2025-11-26 10:56:44,611 | INFO     | . payload setup = 41 s
[2025-11-26 05:57:20] 2025-11-26 10:56:44,615 | INFO     | . stage-in = 0 s
[2025-11-26 05:57:20] 2025-11-26 10:56:44,615 | INFO     | . payload execution = 67861 s
[2025-11-26 05:57:20] 2025-11-26 10:56:44,615 | INFO     | . stage-out = 9 s
[2025-11-26 05:57:20] 2025-11-26 10:56:44,615 | INFO     | . log creation = 1 s
[2025-11-26 05:57:20] 2025-11-26 10:56:44,615 | INFO     | ..............................
[2025-11-26 05:57:20] 2025-11-26 10:56:45,147 | INFO     | 
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | job summary report
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | --------------------------------------------------
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | PanDA job id: 6895366924
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | task id: 47556137
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | errors: (none)
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | pilot state: finished 
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | transexitcode: 0
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | exeerrorcode: 0
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | exeerrordiag: 
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | exitcode: 0
[2025-11-26 05:57:20] 2025-11-26 10:56:45,148 | INFO     | exitmsg: OK
[2025-11-26 05:57:20] 2025-11-26 10:56:45,149 | INFO     | cpuconsumptiontime: 276666 s
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | nevents: 1000
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | neventsw: 0
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | pid: 2755555
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | pgrp: 2755555
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | corecount: 8
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | event service: False
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | sizes: {0: 2284088, 1: 2284144, 2: 2284371, 3: 2284371, 13: 2284399, 24: 2284455, 31: 2284873, 35: 2284901, 67907: 2340368, 67908: 2340367, 67918: 2349417, 67919: 
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | --------------------------------------------------
[2025-11-26 05:57:20] 2025-11-26 10:56:45,153 | INFO     | 
[2025-11-26 05:57:20] 2025-11-26 10:56:45,155 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 05:57:20] 2025-11-26 10:56:45,258 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,258 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | job 6895366924 has completed (purged errors)
[2025-11-26 05:57:20] 2025-11-26 10:56:45,260 | INFO     | overall cleanup function is called
[2025-11-26 05:57:20] 2025-11-26 10:56:46,284 | INFO     | --- collectZombieJob: --- 10, [2755555]
[2025-11-26 05:57:20] 2025-11-26 10:56:46,284 | INFO     | zombie collector waiting for pid 2755555
[2025-11-26 05:57:20] 2025-11-26 10:56:46,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:57:20] 2025-11-26 10:56:46,284 | INFO     | collected zombie processes
[2025-11-26 05:57:20] 2025-11-26 10:56:46,284 | INFO     | will attempt to kill all subprocesses of pid=2755555
[2025-11-26 05:57:20] 2025-11-26 10:56:48,422 | INFO     | process IDs to be killed: [2755555] (in reverse order)
[2025-11-26 05:57:20] 2025-11-26 10:56:48,802 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:57:20] 2025-11-26 10:56:48,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:57:20] 2025-11-26 10:56:48,863 | INFO     | did not find any defunct processes belonging to 2755555
[2025-11-26 05:57:20] 2025-11-26 10:56:48,973 | INFO     | did not find any defunct processes belonging to 2755555
[2025-11-26 05:57:20] 2025-11-26 10:56:48,990 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:57:20] 2025-11-26 10:56:48,990 | INFO     | ready for new job
[2025-11-26 05:57:20] 2025-11-26 10:56:48,990 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:57:20] 2025-11-26 10:56:49,007 | INFO     | ***************************************
[2025-11-26 05:57:20] 2025-11-26 10:56:49,008 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:57:20] 2025-11-26 10:56:49,008 | INFO     | ***************************************
[2025-11-26 05:57:20] 2025-11-26 10:56:49,008 | INFO     | 
[2025-11-26 05:57:20] 2025-11-26 10:56:49,100 | INFO     | architecture information:
[2025-11-26 05:57:20] 2025-11-26 10:56:49,124 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:57:20] 2025-11-26 10:56:49,184 | INFO     | cat /etc/os-release:
[2025-11-26 05:57:20] NAME="CentOS Linux"
[2025-11-26 05:57:20] VERSION="7 (Core)"
[2025-11-26 05:57:20] ID="centos"
[2025-11-26 05:57:20] ID_LIKE="rhel fedora"
[2025-11-26 05:57:20] VERSION_ID="7"
[2025-11-26 05:57:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:57:20] ANSI_COLOR="0;31"
[2025-11-26 05:57:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:57:20] HOME_URL="https://www.centos.org/"
[2025-11-26 05:57:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:57:20] 
[2025-11-26 05:57:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:57:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:57:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:57:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:57:20] 
[2025-11-26 05:57:20] 2025-11-26 10:56:49,184 | INFO     | ***************************************
[2025-11-26 05:57:20] 2025-11-26 10:56:49,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 05:57:20] 2025-11-26 10:56:49,780 | INFO     | sufficient remaining disk space (66111668224 B)
[2025-11-26 05:57:20] 2025-11-26 10:56:49,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:57:20] 2025-11-26 10:56:49,781 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:57:20] 2025-11-26 10:56:49,781 | INFO     | update_server=False
[2025-11-26 05:57:20] 2025-11-26 10:56:49,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:57:20] 2025-11-26 10:56:49,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:57:20] 2025-11-26 10:56:49,793 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:57:20] 2025-11-26 10:56:49,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:57:20] 2025-11-26 10:56:49,900 | INFO     | aborting loop
[2025-11-26 05:57:20] 2025-11-26 10:56:50,271 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:57:20] 2025-11-26 10:56:50,319 | INFO     | all job control threads have been joined
[2025-11-26 05:57:20] 2025-11-26 10:56:50,811 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:50,896 | INFO     | all data control threads have been joined
[2025-11-26 05:57:20] 2025-11-26 10:56:50,906 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:50,974 | INFO     | all payload control threads have been joined
[2025-11-26 05:57:20] 2025-11-26 10:56:51,094 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,277 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,278 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,325 | INFO     | [job] control thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,493 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,494 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,710 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,720 | INFO     | [job] validate thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,800 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,852 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,902 | INFO     | [data] control thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:51,994 | INFO     | [payload] control thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:52,039 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:56:53,807 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:57:20] 2025-11-26 10:57:09,126 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:57:20] 2025-11-26 10:57:09,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668711028544)>', '<ExcThread(monitor, started 139668209252096)>']
[2025-11-26 05:57:20] 2025-11-26 10:57:14,611 | INFO     | all workflow threads have been joined
[2025-11-26 05:57:20] 2025-11-26 10:57:14,611 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:57:20] 2025-11-26 10:57:14,611 | INFO     | traces error code: 0
[2025-11-26 05:57:20] 2025-11-26 10:57:14,612 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:57:20] 2025-11-26 10:57:18,791 | INFO     | PID=2742860 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:57:20] 2025-11-26 10:57:18,791 | INFO     | .. there are 86 such processes running
[2025-11-26 05:57:20] 2025-11-26 10:57:18,791 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:57:20] 2025-11-26 10:57:18,791 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:57:20] 2025-11-26 10:57:18,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:57:20] 2025-11-26 10:57:18,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:57:20] 2025-11-26 10:57:18,792 | INFO     | [monitor] control thread has ended
[2025-11-26 05:57:20] 2025-11-26 10:57:19,161 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:57:20] 2025-11-26 10:57:19,184 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:57:20] 2025-11-26 10:57:19,224 [wrapper] pilotpid: 2742860
[2025-11-26 05:57:20] 2025-11-26 10:57:19,255 [wrapper] Pilot exit status: 0
[2025-11-26 05:57:20] 2025-11-26 10:57:19,377 [wrapper] pandaids: 6895366924
[2025-11-26 05:57:20] 2025-11-26 10:57:19,731 [wrapper] cleanup supervisor_pilot  893828 2742861
[2025-11-26 05:57:20] 2025-11-26 10:57:19,742 [wrapper] Test setup, not cleaning
[2025-11-26 05:57:20] 2025-11-26 10:57:19,761 [wrapper] apfmon messages muted
[2025-11-26 05:57:20] 2025-11-26 10:57:19,778 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:57:20] 2025-11-26 10:57:19,787 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:57:20]  *** Error codes and diagnostics ***
[2025-11-26 05:57:20]     "exeErrorCode": 0,
[2025-11-26 05:57:20]     "exeErrorDiag": "",
[2025-11-26 05:57:20]     "pilotErrorCode": 0,
[2025-11-26 05:57:20]     "pilotErrorDiag": "",
[2025-11-26 05:57:20]  *** Listing of results directory ***
[2025-11-26 05:57:20] total 1323240
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 13:49 queuedata.json
[2025-11-26 05:57:20] -rwx------. 1 boincer umatlas     36292 Nov 23 13:49 runpilot2-wrapper.sh
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas       100 Nov 25 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:57:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 11:01 run_atlas
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas       105 Nov 25 11:01 job.xml
[2025-11-26 05:57:20] -rw-r--r--. 2 boincer umatlas 410496090 Nov 25 11:02 EVNT.47483658._000850.pool.root.1
[2025-11-26 05:57:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 11:02 start_atlas.sh
[2025-11-26 05:57:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 11:02 shared
[2025-11-26 05:57:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 11:02 input.tar.gz
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas         0 Nov 25 11:02 boinc_lockfile
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 11:02 pandaJob.out
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas        57 Nov 25 11:02 setup.sh.local
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas    991909 Nov 25 11:03 agis_schedconf.cvmfs.json
[2025-11-26 05:57:20] drwx------. 5 boincer umatlas      4096 Nov 25 11:03 pilot3
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas       533 Nov 26 05:26 boinc_task_state.xml
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas 919998523 Nov 26 05:54 HITS.47556137._008367.pool.root.1
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas      1058 Nov 26 05:55 memory_monitor_summary.json
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas   1516240 Nov 26 05:56 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas   2202235 Nov 26 05:56 log.47556137._008367.job.log.tgz.1
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas        95 Nov 26 05:56 pilot_heartbeat.json
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas      8611 Nov 26 05:56 heartbeat.json
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas      6840 Nov 26 05:57 init_data.xml
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas       823 Nov 26 05:57 pilotlog.txt
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 05:57 boinc_mmap_file
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas   8089474 Nov 26 05:57 log.47556137._008367.job.log.1
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas        29 Nov 26 05:57 wrapper_checkpoint.txt
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas       353 Nov 26 05:57 output.list
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas       620 Nov 26 05:57 runtime_log
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas  10311680 Nov 26 05:57 result.tar.gz
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 05:57 runtime_log.err
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas       657 Nov 26 05:57 0QrMDmpKUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtgIKDmmlIxrn.diag
[2025-11-26 05:57:20] -rw-r--r--. 1 boincer umatlas     21898 Nov 26 05:57 stderr.txt
[2025-11-26 05:57:20] HITS file was successfully produced:
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas 919998523 Nov 26 05:54 shared/HITS.pool.root.1
[2025-11-26 05:57:20]  *** Contents of shared directory: ***
[2025-11-26 05:57:20] total 1309992
[2025-11-26 05:57:20] -rw-r--r--. 2 boincer umatlas 410496090 Nov 25 11:02 ATLAS.root_0
[2025-11-26 05:57:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 11:02 start_atlas.sh
[2025-11-26 05:57:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 11:02 input.tar.gz
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas 919998523 Nov 26 05:54 HITS.pool.root.1
[2025-11-26 05:57:20] -rw-------. 1 boincer umatlas  10311680 Nov 26 05:57 result.tar.gz
05:57:42 (2736964): run_atlas exited; CPU time 280650.953450
05:57:42 (2736964): called boinc_finish(0)

</stderr_txt>
]]>

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