Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:00 (2843036): wrapper (7.7.26015): starting
00:05:00 (2843036): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:05:00] Arguments: --nthreads 9
[2025-11-25 00:05:00] Threads: 9
[2025-11-25 00:05:00] Checking for CVMFS
[2025-11-25 00:05:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:05:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:05:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:21] 2.13.3.0 9158 28122 312308 153270 1 145 26008517 32935937 28004 16776704 0 164314067 99.787 91784101 33847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:05:21] CVMFS is ok
[2025-11-25 00:05:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:21] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:21] Checking for apptainer binary...
[2025-11-25 00:05:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:21] Running /usr/bin/apptainer --version
[2025-11-25 00:05:21] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:21] c-8-16.aglt2.org
[2025-11-25 00:05:21] apptainer works
[2025-11-25 00:05:21] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:05:21] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:05:21] Starting ATLAS job with PandaID=6895385148
[2025-11-25 00:05:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:36:25]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:36:25] 2025-11-26 02:35:50,419 | INFO     | PID=2848197 has CPU usage=14.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 21:36:25] 2025-11-26 02:35:50,420 | INFO     | .. there are 42 such processes running
[2025-11-25 21:36:25] 2025-11-26 02:35:51,307 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:36:25] 2025-11-26 02:35:51,313 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1425750000003
[2025-11-25 21:36:25] 2025-11-26 02:35:51,330 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895385148/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,331 | INFO     | extracted standard info from prmon json
[2025-11-25 21:36:25] 2025-11-26 02:35:51,331 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:36:25] 2025-11-26 02:35:51,331 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:36:25] 2025-11-26 02:35:51,355 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:36:25] 2025-11-26 02:35:51,357 | INFO     | sum of square deviations: 632175265567.5659
[2025-11-25 21:36:25] 2025-11-26 02:35:51,424 | INFO     | time since job start (77404s) is within the limit (172800.0s)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,425 | INFO     | sum of deviations: 4087662729486.9937
[2025-11-25 21:36:25] 2025-11-26 02:35:51,425 | INFO     | mean x: 1764085832.4345427
[2025-11-25 21:36:25] 2025-11-26 02:35:51,425 | INFO     | mean y: 3084723.9637223976
[2025-11-25 21:36:25] 2025-11-26 02:35:51,425 | INFO     | intersect: -11403542997.202662
[2025-11-25 21:36:25] 2025-11-26 02:35:51,427 | INFO     | chi2: 8.960417029870944
[2025-11-25 21:36:25] 2025-11-26 02:35:51,432 | INFO     | sum of square deviations: 624726687323.183
[2025-11-25 21:36:25] 2025-11-26 02:35:51,502 | INFO     | sum of deviations: 4528294930262.425
[2025-11-25 21:36:25] 2025-11-26 02:35:51,507 | INFO     | mean x: 1764085679.9382422
[2025-11-25 21:36:25] 2025-11-26 02:35:51,507 | INFO     | mean y: 3093745.877276326
[2025-11-25 21:36:25] 2025-11-26 02:35:51,507 | INFO     | intersect: -12783778342.525097
[2025-11-25 21:36:25] 2025-11-26 02:35:51,509 | INFO     | chi2: 6.024901462509391
[2025-11-25 21:36:25] 2025-11-26 02:35:51,509 | INFO     | current chi2=6.024901462509391 (change=32.760925720036866 %)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,515 | INFO     | sum of square deviations: 617336777446.147
[2025-11-25 21:36:25] 2025-11-26 02:35:51,593 | INFO     | sum of deviations: 4771964356328.001
[2025-11-25 21:36:25] 2025-11-26 02:35:51,593 | INFO     | mean x: 1764085527.4411764
[2025-11-25 21:36:25] 2025-11-26 02:35:51,594 | INFO     | mean y: 3098767.4864864866
[2025-11-25 21:36:25] 2025-11-26 02:35:51,594 | INFO     | intersect: -13633142529.019987
[2025-11-25 21:36:25] 2025-11-26 02:35:51,599 | INFO     | chi2: 4.640853171747145
[2025-11-25 21:36:25] 2025-11-26 02:35:51,600 | INFO     | current chi2=4.640853171747145 (change=22.972131567207153 %)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,600 | INFO     | right removable region: 1257
[2025-11-25 21:36:25] 2025-11-26 02:35:51,601 | INFO     | sum of square deviations: 624725964473.183
[2025-11-25 21:36:25] 2025-11-26 02:35:51,674 | INFO     | sum of deviations: 3592459574824.3926
[2025-11-25 21:36:25] 2025-11-26 02:35:51,679 | INFO     | mean x: 1764085984.9382422
[2025-11-25 21:36:25] 2025-11-26 02:35:51,679 | INFO     | mean y: 3094858.6460807603
[2025-11-25 21:36:25] 2025-11-26 02:35:51,679 | INFO     | intersect: -10141205118.943449
[2025-11-25 21:36:25] 2025-11-26 02:35:51,681 | INFO     | chi2: 5.543105174440283
[2025-11-25 21:36:25] 2025-11-26 02:35:51,681 | INFO     | current chi2=5.543105174440283 (change=38.137866173399296 %)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,687 | INFO     | sum of square deviations: 617335562388.0287
[2025-11-25 21:36:25] 2025-11-26 02:35:51,771 | INFO     | sum of deviations: 3341787276138.3525
[2025-11-25 21:36:25] 2025-11-26 02:35:51,771 | INFO     | mean x: 1764086137.4403815
[2025-11-25 21:36:25] 2025-11-26 02:35:51,771 | INFO     | mean y: 3100026.7647058824
[2025-11-25 21:36:25] 2025-11-26 02:35:51,771 | INFO     | intersect: -9546326520.615807
[2025-11-25 21:36:25] 2025-11-26 02:35:51,777 | INFO     | chi2: 4.683250843263238
[2025-11-25 21:36:25] 2025-11-26 02:35:51,777 | INFO     | current chi2=4.683250843263238 (change=15.5121417349594 %)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,777 | INFO     | left removable region: 20
[2025-11-25 21:36:25] 2025-11-26 02:35:51,779 | INFO     | sum of square deviations: 586933676516.6882
[2025-11-25 21:36:25] 2025-11-26 02:35:51,851 | INFO     | sum of deviations: 3799182954032.6655
[2025-11-25 21:36:25] 2025-11-26 02:35:51,856 | INFO     | mean x: 1764086106.948262
[2025-11-25 21:36:25] 2025-11-26 02:35:51,856 | INFO     | mean y: 3119126.7291835085
[2025-11-25 21:36:25] 2025-11-26 02:35:51,856 | INFO     | intersect: -11415693824.572178
[2025-11-25 21:36:25] 2025-11-26 02:35:51,858 | INFO     | chi2: 0.16844258422320374
[2025-11-25 21:36:25] 2025-11-26 02:35:51,858 | INFO     | current memory leak: 6.47 B/s (using 1237 data points, chi2=0.17)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,859 | INFO     | could have reported an average CPU frequency of 2600 MHz (46 samples)
[2025-11-25 21:36:25] 2025-11-26 02:35:51,859 | INFO     | ..............................
[2025-11-25 21:36:25] 2025-11-26 02:35:51,859 | INFO     | . Timing measurements:
[2025-11-25 21:36:25] 2025-11-26 02:35:51,859 | INFO     | . get job = 0 s
[2025-11-25 21:36:25] 2025-11-26 02:35:51,860 | INFO     | . initial setup = 3 s
[2025-11-25 21:36:25] 2025-11-26 02:35:51,860 | INFO     | . payload setup = 11 s
[2025-11-25 21:36:25] 2025-11-26 02:35:51,860 | INFO     | . stage-in = 0 s
[2025-11-25 21:36:25] 2025-11-26 02:35:51,860 | INFO     | . payload execution = 77344 s
[2025-11-25 21:36:25] 2025-11-26 02:35:51,860 | INFO     | . stage-out = 4 s
[2025-11-25 21:36:25] 2025-11-26 02:35:51,860 | INFO     | . log creation = 1 s
[2025-11-25 21:36:25] 2025-11-26 02:35:51,860 | INFO     | ..............................
[2025-11-25 21:36:25] 2025-11-26 02:35:52,037 | INFO     | 
[2025-11-25 21:36:25] 2025-11-26 02:35:52,038 | INFO     | job summary report
[2025-11-25 21:36:25] 2025-11-26 02:35:52,038 | INFO     | --------------------------------------------------
[2025-11-25 21:36:25] 2025-11-26 02:35:52,038 | INFO     | PanDA job id: 6895385148
[2025-11-25 21:36:25] 2025-11-26 02:35:52,038 | INFO     | task id: 47556149
[2025-11-25 21:36:25] 2025-11-26 02:35:52,038 | INFO     | errors: (none)
[2025-11-25 21:36:25] 2025-11-26 02:35:52,038 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | pilot state: finished 
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | transexitcode: 0
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | exeerrorcode: 0
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | exeerrordiag: 
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | exitcode: 0
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | exitmsg: OK
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | cpuconsumptiontime: 304772 s
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | nevents: 1000
[2025-11-25 21:36:25] 2025-11-26 02:35:52,039 | INFO     | neventsw: 0
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | pid: 2855332
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | pgrp: 2855332
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | corecount: 9
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | event service: False
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | sizes: {0: 2284139, 1: 2284338, 9: 2284600, 12: 2284628, 77359: 2347940, 77364: 2356939, 77365: 2357123, 77384: 2357369}
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | --------------------------------------------------
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | 
[2025-11-25 21:36:25] 2025-11-26 02:35:52,040 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 21:36:25] 2025-11-26 02:35:52,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:36:25] 2025-11-26 02:35:52,080 | INFO     | job 6895385148 has completed (purged errors)
[2025-11-25 21:36:25] 2025-11-26 02:35:52,081 | INFO     | overall cleanup function is called
[2025-11-25 21:36:25] 2025-11-26 02:35:53,106 | INFO     | --- collectZombieJob: --- 10, [2855332]
[2025-11-25 21:36:25] 2025-11-26 02:35:53,107 | INFO     | zombie collector waiting for pid 2855332
[2025-11-25 21:36:25] 2025-11-26 02:35:53,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:36:25] 2025-11-26 02:35:53,107 | INFO     | collected zombie processes
[2025-11-25 21:36:25] 2025-11-26 02:35:53,107 | INFO     | will attempt to kill all subprocesses of pid=2855332
[2025-11-25 21:36:25] 2025-11-26 02:35:53,985 | INFO     | process IDs to be killed: [2855332] (in reverse order)
[2025-11-25 21:36:25] 2025-11-26 02:35:54,250 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:36:25] 2025-11-26 02:35:54,250 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:36:25] 2025-11-26 02:35:54,279 | INFO     | did not find any defunct processes belonging to 2855332
[2025-11-25 21:36:25] 2025-11-26 02:35:54,308 | INFO     | did not find any defunct processes belonging to 2855332
[2025-11-25 21:36:25] 2025-11-26 02:35:54,312 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:36:25] 2025-11-26 02:35:54,313 | INFO     | ready for new job
[2025-11-25 21:36:25] 2025-11-26 02:35:54,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:36:25] 2025-11-26 02:35:54,323 | INFO     | ***************************************
[2025-11-25 21:36:25] 2025-11-26 02:35:54,324 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:36:25] 2025-11-26 02:35:54,324 | INFO     | ***************************************
[2025-11-25 21:36:25] 2025-11-26 02:35:54,324 | INFO     | 
[2025-11-25 21:36:25] 2025-11-26 02:35:54,330 | INFO     | architecture information:
[2025-11-25 21:36:25] 2025-11-26 02:35:54,330 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:36:25] 2025-11-26 02:35:54,401 | INFO     | cat /etc/os-release:
[2025-11-25 21:36:25] NAME="CentOS Linux"
[2025-11-25 21:36:25] VERSION="7 (Core)"
[2025-11-25 21:36:25] ID="centos"
[2025-11-25 21:36:25] ID_LIKE="rhel fedora"
[2025-11-25 21:36:25] VERSION_ID="7"
[2025-11-25 21:36:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:36:25] ANSI_COLOR="0;31"
[2025-11-25 21:36:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:36:25] HOME_URL="https://www.centos.org/"
[2025-11-25 21:36:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:36:25] 
[2025-11-25 21:36:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:36:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:36:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:36:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:36:25] 
[2025-11-25 21:36:25] 2025-11-26 02:35:54,401 | INFO     | ***************************************
[2025-11-25 21:36:25] 2025-11-26 02:35:54,905 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 21:36:25] 2025-11-26 02:35:54,983 | INFO     | sufficient remaining disk space (72743911424 B)
[2025-11-25 21:36:25] 2025-11-26 02:35:54,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:36:25] 2025-11-26 02:35:54,984 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:36:25] 2025-11-26 02:35:54,984 | INFO     | update_server=False
[2025-11-25 21:36:25] 2025-11-26 02:35:54,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:36:25] 2025-11-26 02:35:55,079 | INFO     | all payload control threads have been joined
[2025-11-25 21:36:25] 2025-11-26 02:35:55,121 | INFO     | all data control threads have been joined
[2025-11-25 21:36:25] 2025-11-26 02:35:55,180 | INFO     | all job control threads have been joined
[2025-11-25 21:36:25] 2025-11-26 02:35:55,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:36:25] 2025-11-26 02:35:55,785 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:36:25] 2025-11-26 02:35:55,785 | INFO     | aborting loop
[2025-11-25 21:36:25] 2025-11-26 02:35:55,990 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,086 | INFO     | [payload] control thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,129 | INFO     | [data] control thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,186 | INFO     | [job] control thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,463 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,489 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,791 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:56,907 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:57,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:36:25] 2025-11-26 02:35:57,062 | INFO     | [job] validate thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:57,099 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:57,352 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:57,426 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:57,443 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:57,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:36:25] 2025-11-26 02:35:58,066 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:35:59,954 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:36:25] 2025-11-26 02:36:01,686 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:36:25] 2025-11-26 02:36:01,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140647823583040)>', '<ExcThread(monitor, started 140647470188288)>']
[2025-11-25 21:36:25] 2025-11-26 02:36:06,745 | INFO     | all workflow threads have been joined
[2025-11-25 21:36:25] 2025-11-26 02:36:06,745 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:36:25] 2025-11-26 02:36:06,745 | INFO     | traces error code: 0
[2025-11-25 21:36:25] 2025-11-26 02:36:06,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:36:25] 2025-11-26 02:36:25,091 | INFO     | PID=2848197 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 21:36:25] 2025-11-26 02:36:25,092 | INFO     | .. there are 42 such processes running
[2025-11-25 21:36:25] 2025-11-26 02:36:25,092 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:36:25] 2025-11-26 02:36:25,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:36:25] 2025-11-26 02:36:25,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:36:25] 2025-11-26 02:36:25,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:36:25] 2025-11-26 02:36:25,093 | INFO     | [monitor] control thread has ended
[2025-11-25 21:36:25] 2025-11-26 02:36:25,260 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:36:25] 2025-11-26 02:36:25,262 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:36:25] 2025-11-26 02:36:25,265 [wrapper] pilotpid: 2848197
[2025-11-25 21:36:25] 2025-11-26 02:36:25,267 [wrapper] Pilot exit status: 0
[2025-11-25 21:36:25] 2025-11-26 02:36:25,279 [wrapper] pandaids: 6895385148
[2025-11-25 21:36:25] 2025-11-26 02:36:25,363 [wrapper] cleanup supervisor_pilot 3353088 2848198
[2025-11-25 21:36:25] 2025-11-26 02:36:25,367 [wrapper] Test setup, not cleaning
[2025-11-25 21:36:25] 2025-11-26 02:36:25,370 [wrapper] apfmon messages muted
[2025-11-25 21:36:25] 2025-11-26 02:36:25,373 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:36:25] 2025-11-26 02:36:25,376 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:36:25]  *** Error codes and diagnostics ***
[2025-11-25 21:36:25]     "exeErrorCode": 0,
[2025-11-25 21:36:25]     "exeErrorDiag": "",
[2025-11-25 21:36:25]     "pilotErrorCode": 0,
[2025-11-25 21:36:25]     "pilotErrorDiag": "",
[2025-11-25 21:36:25]  *** Listing of results directory ***
[2025-11-25 21:36:25] total 1336040
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-25 21:36:25] -rwx------. 1 boincer umatlas     36292 Nov 24 00:10 runpilot2-wrapper.sh
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:10 queuedata.json
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:36:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-25 21:36:25] -rw-r--r--. 2 boincer umatlas 410539520 Nov 25 00:05 EVNT.47483658._001232.pool.root.1
[2025-11-25 21:36:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-25 21:36:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:05 shared
[2025-11-25 21:36:25] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:05 input.tar.gz
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:05 boinc_lockfile
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:05 pandaJob.out
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas        57 Nov 25 00:05 setup.sh.local
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-25 21:36:25] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas       533 Nov 25 21:23 boinc_task_state.xml
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 21:27 init_data.xml
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas 927438485 Nov 25 21:34 HITS.47556149._002185.pool.root.1
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas      1076 Nov 25 21:35 memory_monitor_summary.json
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas   1516240 Nov 25 21:35 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas   2522409 Nov 25 21:35 log.47556149._002185.job.log.tgz.1
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas      8672 Nov 25 21:35 heartbeat.json
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas        29 Nov 25 21:36 wrapper_checkpoint.txt
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:36 boinc_mmap_file
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas        95 Nov 25 21:36 pilot_heartbeat.json
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas       823 Nov 25 21:36 pilotlog.txt
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas  10581030 Nov 25 21:36 log.47556149._002185.job.log.1
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas       353 Nov 25 21:36 output.list
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas       620 Nov 25 21:36 runtime_log
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas  13127680 Nov 25 21:36 result.tar.gz
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas       662 Nov 25 21:36 T9gLDmq1dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXSLKDmwweBJo.diag
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 21:36 runtime_log.err
[2025-11-25 21:36:25] -rw-r--r--. 1 boincer umatlas     21403 Nov 25 21:36 stderr.txt
[2025-11-25 21:36:25] HITS file was successfully produced:
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas 927438485 Nov 25 21:34 shared/HITS.pool.root.1
[2025-11-25 21:36:25]  *** Contents of shared directory: ***
[2025-11-25 21:36:25] total 1320044
[2025-11-25 21:36:25] -rw-r--r--. 2 boincer umatlas 410539520 Nov 25 00:05 ATLAS.root_0
[2025-11-25 21:36:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:05 start_atlas.sh
[2025-11-25 21:36:25] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:05 input.tar.gz
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas 927438485 Nov 25 21:34 HITS.pool.root.1
[2025-11-25 21:36:25] -rw-------. 1 boincer umatlas  13127680 Nov 25 21:36 result.tar.gz
21:36:47 (2843036): run_atlas exited; CPU time 306930.112442
21:36:47 (2843036): called boinc_finish(0)

</stderr_txt>
]]>

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