Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:45 (2891282): wrapper (7.7.26015): starting
00:02:45 (2891282): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:45] Arguments: --nthreads 9
[2025-11-26 00:02:45] Threads: 9
[2025-11-26 00:02:45] Checking for CVMFS
[2025-11-26 00:02:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:48] 2.13.3.0 11048 29604 396420 153309 2 351 18472101 32935936 28410 16776704 0 81476567 99.425 119848940 37742 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:02:48] CVMFS is ok
[2025-11-26 00:02:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:48] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:48] Checking for apptainer binary...
[2025-11-26 00:02:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:48] Running /usr/bin/apptainer --version
[2025-11-26 00:02:48] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:49] c6-1-24-2.aglt2.org
[2025-11-26 00:02:49] apptainer works
[2025-11-26 00:02:49] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:02:49] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:02:49] Starting ATLAS job with PandaID=6895884161
[2025-11-26 00:02:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:38:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:38:12] 2025-11-26 23:37:26,814 | INFO     | time since job start (66799s) is within the limit (172800.0s)
[2025-11-26 18:38:12] 2025-11-26 23:37:28,817 | INFO     | monitor loop #4134: job 0:6895884161 is in state 'finished'
[2025-11-26 18:38:12] 2025-11-26 23:37:28,817 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:38:12] 2025-11-26 23:37:28,822 | INFO     | time since job start (66801s) is within the limit (172800.0s)
[2025-11-26 18:38:12] 2025-11-26 23:37:30,829 | INFO     | time since job start (66803s) is within the limit (172800.0s)
[2025-11-26 18:38:12] 2025-11-26 23:37:31,324 | INFO     | monitor loop #4135: job 0:6895884161 is in state 'finished'
[2025-11-26 18:38:12] 2025-11-26 23:37:31,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:38:12] 2025-11-26 23:37:32,860 | INFO     | time since job start (66805s) is within the limit (172800.0s)
[2025-11-26 18:38:12] 2025-11-26 23:37:32,861 | INFO     | 66811s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 18:38:12] 2025-11-26 23:37:33,829 | INFO     | monitor loop #4136: job 0:6895884161 is in state 'finished'
[2025-11-26 18:38:12] 2025-11-26 23:37:33,830 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:38:12] 2025-11-26 23:37:34,868 | INFO     | time since job start (66807s) is within the limit (172800.0s)
[2025-11-26 18:38:12] 2025-11-26 23:37:36,335 | INFO     | monitor loop #4137: job 0:6895884161 is in state 'finished'
[2025-11-26 18:38:12] 2025-11-26 23:37:36,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:38:12] 2025-11-26 23:37:36,875 | INFO     | time since job start (66809s) is within the limit (172800.0s)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,238 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 18:38:12] 2025-11-26 23:37:37,241 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3124.508196428571
[2025-11-26 18:38:12] 2025-11-26 23:37:37,257 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895884161/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,258 | INFO     | extracted standard info from prmon json
[2025-11-26 18:38:12] 2025-11-26 23:37:37,259 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:38:12] 2025-11-26 23:37:37,259 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:38:12] 2025-11-26 23:37:37,275 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:38:12] 2025-11-26 23:37:37,276 | INFO     | sum of square deviations: 403765458268.9258
[2025-11-26 18:38:12] 2025-11-26 23:37:37,297 | INFO     | sum of deviations: 3447130361540.144
[2025-11-26 18:38:12] 2025-11-26 23:37:37,298 | INFO     | mean x: 1764166905.2774725
[2025-11-26 18:38:12] 2025-11-26 23:37:37,298 | INFO     | mean y: 3046343.4285714286
[2025-11-26 18:38:12] 2025-11-26 23:37:37,298 | INFO     | intersect: -15058453290.737421
[2025-11-26 18:38:12] 2025-11-26 23:37:37,299 | INFO     | chi2: 16.818737045549014
[2025-11-26 18:38:12] 2025-11-26 23:37:37,300 | INFO     | sum of square deviations: 398244960693.0559
[2025-11-26 18:38:12] 2025-11-26 23:37:37,321 | INFO     | sum of deviations: 3828589052702.731
[2025-11-26 18:38:12] 2025-11-26 23:37:37,321 | INFO     | mean x: 1764166752.7856486
[2025-11-26 18:38:12] 2025-11-26 23:37:37,321 | INFO     | mean y: 3056878.2134314626
[2025-11-26 18:38:12] 2025-11-26 23:37:37,321 | INFO     | intersect: -16957030965.969128
[2025-11-26 18:38:12] 2025-11-26 23:37:37,322 | INFO     | chi2: 13.691889555091619
[2025-11-26 18:38:12] 2025-11-26 23:37:37,322 | INFO     | current chi2=13.691889555091619 (change=18.591452390207255 %)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,323 | INFO     | right removable region: 1086
[2025-11-26 18:38:12] 2025-11-26 23:37:37,324 | INFO     | sum of square deviations: 398243776683.0558
[2025-11-26 18:38:12] 2025-11-26 23:37:37,344 | INFO     | sum of deviations: 2988694239926.022
[2025-11-26 18:38:12] 2025-11-26 23:37:37,344 | INFO     | mean x: 1764167057.7856486
[2025-11-26 18:38:12] 2025-11-26 23:37:37,344 | INFO     | mean y: 3059002.231830727
[2025-11-26 18:38:12] 2025-11-26 23:37:37,345 | INFO     | intersect: -13236459686.009705
[2025-11-26 18:38:12] 2025-11-26 23:37:37,346 | INFO     | chi2: 12.7097273209617
[2025-11-26 18:38:12] 2025-11-26 23:37:37,346 | INFO     | current chi2=12.7097273209617 (change=24.431143155750448 %)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,346 | INFO     | left removable region: 10
[2025-11-26 18:38:12] 2025-11-26 23:37:37,347 | INFO     | sum of square deviations: 386275138545.6239
[2025-11-26 18:38:12] 2025-11-26 23:37:37,374 | INFO     | sum of deviations: 3043483285163.8667
[2025-11-26 18:38:12] 2025-11-26 23:37:37,374 | INFO     | mean x: 1764167027.3039033
[2025-11-26 18:38:12] 2025-11-26 23:37:37,374 | INFO     | mean y: 3083595.0065055764
[2025-11-26 18:38:12] 2025-11-26 23:37:37,374 | INFO     | intersect: -13896886462.741556
[2025-11-26 18:38:12] 2025-11-26 23:37:37,375 | INFO     | chi2: 5.614715158330404
[2025-11-26 18:38:12] 2025-11-26 23:37:37,376 | INFO     | current memory leak: 7.88 B/s (using 1076 data points, chi2=5.61)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | could have reported an average CPU frequency of 2991 MHz (40 samples)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | ..............................
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . Timing measurements:
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . get job = 0 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . initial setup = 5 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . payload setup = 60 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . stage-in = 0 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . payload execution = 66619 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . stage-out = 6 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | . log creation = 2 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,377 | INFO     | ..............................
[2025-11-26 18:38:12] 2025-11-26 23:37:37,929 | INFO     | 
[2025-11-26 18:38:12] 2025-11-26 23:37:37,929 | INFO     | job summary report
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | --------------------------------------------------
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | PanDA job id: 6895884161
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | task id: 47556149
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | errors: (none)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | pilot state: finished 
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | transexitcode: 0
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | exeerrorcode: 0
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | exeerrordiag: 
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | exitcode: 0
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | exitmsg: OK
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | cpuconsumptiontime: 249072 s
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | nevents: 1000
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | neventsw: 0
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | pid: 2911006
[2025-11-26 18:38:12] 2025-11-26 23:37:37,930 | INFO     | pgrp: 2911006
[2025-11-26 18:38:12] 2025-11-26 23:37:37,931 | INFO     | corecount: 9
[2025-11-26 18:38:12] 2025-11-26 23:37:37,931 | INFO     | event service: False
[2025-11-26 18:38:12] 2025-11-26 23:37:37,931 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 14: 2284320, 25: 2284348, 36: 2284376, 40: 2284794, 47: 2284822, 66685: 2340572, 66693: 2349566, 66696: 2349622, 66725:
[2025-11-26 18:38:12] 2025-11-26 23:37:37,931 | INFO     | --------------------------------------------------
[2025-11-26 18:38:12] 2025-11-26 23:37:37,931 | INFO     | 
[2025-11-26 18:38:12] 2025-11-26 23:37:37,931 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,988 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:38:12] 2025-11-26 23:37:37,989 | INFO     | job 6895884161 has completed (purged errors)
[2025-11-26 18:38:12] 2025-11-26 23:37:37,989 | INFO     | overall cleanup function is called
[2025-11-26 18:38:12] 2025-11-26 23:37:39,006 | INFO     | --- collectZombieJob: --- 10, [2911006]
[2025-11-26 18:38:12] 2025-11-26 23:37:39,006 | INFO     | zombie collector waiting for pid 2911006
[2025-11-26 18:38:12] 2025-11-26 23:37:39,006 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:38:12] 2025-11-26 23:37:39,007 | INFO     | collected zombie processes
[2025-11-26 18:38:12] 2025-11-26 23:37:39,007 | INFO     | will attempt to kill all subprocesses of pid=2911006
[2025-11-26 18:38:12] 2025-11-26 23:37:40,023 | INFO     | process IDs to be killed: [2911006] (in reverse order)
[2025-11-26 18:38:12] 2025-11-26 23:37:40,634 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:38:12] 2025-11-26 23:37:40,634 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:38:12] 2025-11-26 23:37:40,658 | INFO     | did not find any defunct processes belonging to 2911006
[2025-11-26 18:38:12] 2025-11-26 23:37:40,735 | INFO     | did not find any defunct processes belonging to 2911006
[2025-11-26 18:38:12] 2025-11-26 23:37:40,745 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:38:12] 2025-11-26 23:37:40,745 | INFO     | ready for new job
[2025-11-26 18:38:12] 2025-11-26 23:37:40,745 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:38:12] 2025-11-26 23:37:40,753 | INFO     | ***************************************
[2025-11-26 18:38:12] 2025-11-26 23:37:40,753 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:38:12] 2025-11-26 23:37:40,753 | INFO     | ***************************************
[2025-11-26 18:38:12] 2025-11-26 23:37:40,753 | INFO     | 
[2025-11-26 18:38:12] 2025-11-26 23:37:40,759 | INFO     | architecture information:
[2025-11-26 18:38:12] 2025-11-26 23:37:40,764 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:38:12] 2025-11-26 23:37:40,793 | INFO     | cat /etc/os-release:
[2025-11-26 18:38:12] NAME="CentOS Linux"
[2025-11-26 18:38:12] VERSION="7 (Core)"
[2025-11-26 18:38:12] ID="centos"
[2025-11-26 18:38:12] ID_LIKE="rhel fedora"
[2025-11-26 18:38:12] VERSION_ID="7"
[2025-11-26 18:38:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:38:12] ANSI_COLOR="0;31"
[2025-11-26 18:38:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:38:12] HOME_URL="https://www.centos.org/"
[2025-11-26 18:38:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:38:12] 
[2025-11-26 18:38:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:38:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:38:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:38:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:38:12] 
[2025-11-26 18:38:12] 2025-11-26 23:37:40,793 | INFO     | ***************************************
[2025-11-26 18:38:12] 2025-11-26 23:37:41,302 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 18:38:12] 2025-11-26 23:37:41,360 | INFO     | sufficient remaining disk space (70788317184 B)
[2025-11-26 18:38:12] 2025-11-26 23:37:41,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:38:12] 2025-11-26 23:37:41,361 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:38:12] 2025-11-26 23:37:41,361 | INFO     | update_server=False
[2025-11-26 18:38:12] 2025-11-26 23:37:41,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:38:12] 2025-11-26 23:37:41,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:38:12] 2025-11-26 23:37:41,362 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:38:12] 2025-11-26 23:37:41,364 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 18:38:12] 2025-11-26 23:37:41,365 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 18:38:12] 2025-11-26 23:37:41,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:38:12] 2025-11-26 23:37:41,365 | INFO     | will abort loop
[2025-11-26 18:38:12] 2025-11-26 23:37:41,493 | INFO     | all data control threads have been joined
[2025-11-26 18:38:12] 2025-11-26 23:37:41,637 | INFO     | all job control threads have been joined
[2025-11-26 18:38:12] 2025-11-26 23:37:41,844 | INFO     | all payload control threads have been joined
[2025-11-26 18:38:12] 2025-11-26 23:37:42,368 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:42,377 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:42,499 | INFO     | [data] control thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:42,529 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:42,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:38:12] 2025-11-26 23:37:42,645 | INFO     | [job] control thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:42,850 | INFO     | [payload] control thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,045 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,064 | INFO     | [job] validate thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,164 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,359 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,386 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,395 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,498 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,585 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:43,592 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:37:45,385 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:38:12] 2025-11-26 23:38:05,560 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:38:12] 2025-11-26 23:38:05,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140130030982976)>', '<ExcThread(monitor, started 140129079392000)>']
[2025-11-26 18:38:12] 2025-11-26 23:38:10,977 | INFO     | all workflow threads have been joined
[2025-11-26 18:38:12] 2025-11-26 23:38:10,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:38:12] 2025-11-26 23:38:10,978 | INFO     | traces error code: 0
[2025-11-26 18:38:12] 2025-11-26 23:38:10,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:38:12] 2025-11-26 23:38:11,000 | INFO     | PID=2895839 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:38:12] 2025-11-26 23:38:11,000 | INFO     | .. there are 45 such processes running
[2025-11-26 18:38:12] 2025-11-26 23:38:11,001 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:38:12] 2025-11-26 23:38:11,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:38:12] 2025-11-26 23:38:11,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:38:12] 2025-11-26 23:38:11,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:38:12] 2025-11-26 23:38:11,001 | INFO     | [monitor] control thread has ended
[2025-11-26 18:38:12] 2025-11-26 23:38:11,648 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:38:12] 2025-11-26 23:38:11,668 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:38:12] 2025-11-26 23:38:11,684 [wrapper] pilotpid: 2895839
[2025-11-26 18:38:12] 2025-11-26 23:38:11,720 [wrapper] Pilot exit status: 0
[2025-11-26 18:38:12] 2025-11-26 23:38:11,792 [wrapper] pandaids: 6895884161
[2025-11-26 18:38:12] 2025-11-26 23:38:12,035 [wrapper] cleanup supervisor_pilot 3448354 2895840
[2025-11-26 18:38:12] 2025-11-26 23:38:12,055 [wrapper] Test setup, not cleaning
[2025-11-26 18:38:12] 2025-11-26 23:38:12,076 [wrapper] apfmon messages muted
[2025-11-26 18:38:12] 2025-11-26 23:38:12,095 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:38:12] 2025-11-26 23:38:12,115 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:38:12]  *** Error codes and diagnostics ***
[2025-11-26 18:38:12]     "exeErrorCode": 0,
[2025-11-26 18:38:12]     "exeErrorDiag": "",
[2025-11-26 18:38:12]     "pilotErrorCode": 0,
[2025-11-26 18:38:12]     "pilotErrorDiag": "",
[2025-11-26 18:38:12]  *** Listing of results directory ***
[2025-11-26 18:38:12] total 1307716
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:06 queuedata.json
[2025-11-26 18:38:12] -rwx------. 1 boincer umatlas     36292 Nov 24 12:08 runpilot2-wrapper.sh
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:38:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-26 18:38:12] -rw-r--r--. 2 boincer umatlas 408610196 Nov 26 00:02 EVNT.47483658._001400.pool.root.1
[2025-11-26 18:38:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 18:38:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-26 18:38:12] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:02 input.tar.gz
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:02 pandaJob.out
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas        57 Nov 26 00:02 setup.sh.local
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 18:38:12] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:19 boinc_task_state.xml
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas 904716745 Nov 26 18:35 HITS.47556149._003864.pool.root.1
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 18:36 init_data.xml
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas      1065 Nov 26 18:36 memory_monitor_summary.json
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:37 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas   2334953 Nov 26 18:37 log.47556149._003864.job.log.tgz.1
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas      8645 Nov 26 18:37 heartbeat.json
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas        95 Nov 26 18:38 pilot_heartbeat.json
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas       823 Nov 26 18:38 pilotlog.txt
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:38 boinc_mmap_file
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:38 wrapper_checkpoint.txt
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas   8592679 Nov 26 18:38 log.47556149._003864.job.log.1
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas       353 Nov 26 18:38 output.list
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:38 runtime_log
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas  10946560 Nov 26 18:38 result.tar.gz
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 18:38 runtime_log.err
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas       662 Nov 26 18:38 l9nLDm9Dph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZnLKDmWsCNom.diag
[2025-11-26 18:38:12] -rw-r--r--. 1 boincer umatlas     21808 Nov 26 18:38 stderr.txt
[2025-11-26 18:38:12] HITS file was successfully produced:
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas 904716745 Nov 26 18:35 shared/HITS.pool.root.1
[2025-11-26 18:38:12]  *** Contents of shared directory: ***
[2025-11-26 18:38:12] total 1293844
[2025-11-26 18:38:12] -rw-r--r--. 2 boincer umatlas 408610196 Nov 26 00:02 ATLAS.root_0
[2025-11-26 18:38:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 18:38:12] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:02 input.tar.gz
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas 904716745 Nov 26 18:35 HITS.pool.root.1
[2025-11-26 18:38:12] -rw-------. 1 boincer umatlas  10946560 Nov 26 18:38 result.tar.gz
18:38:14 (2891282): run_atlas exited; CPU time 250708.948081
18:38:14 (2891282): called boinc_finish(0)

</stderr_txt>
]]>

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