Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:00 (3719913): wrapper (7.7.26015): starting
00:11:00 (3719913): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:11:00] Arguments: --nthreads 8
[2025-11-25 00:11:00] Threads: 8
[2025-11-25 00:11:00] Checking for CVMFS
[2025-11-25 00:11:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:11:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:11:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:11:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:11:01] 2.13.3.0 42195 28032 338236 153270 0 150 28293696 32935937 29346 16776704 0 165646624 99.783 97518563 33428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:11:01] CVMFS is ok
[2025-11-25 00:11:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:11:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:11:01] Further information can be found at the LHC@home message board.
[2025-11-25 00:11:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:11:01] Checking for apptainer binary...
[2025-11-25 00:11:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:11:01] Running /usr/bin/apptainer --version
[2025-11-25 00:11:01] apptainer version 1.4.4-1.el9
[2025-11-25 00:11:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:11:01] c-6-3.aglt2.org
[2025-11-25 00:11:01] apptainer works
[2025-11-25 00:11:01] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:11:01] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:11:01] Starting ATLAS job with PandaID=6895355596
[2025-11-25 00:11:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:28:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:28:28] 2025-11-25 19:27:54,945 | INFO     | time since job start (51382s) is within the limit (172800.0s)
[2025-11-25 14:28:28] 2025-11-25 19:27:55,798 | INFO     | monitor loop #3359: job 0:6895355596 is in state 'finished'
[2025-11-25 14:28:28] 2025-11-25 19:27:55,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,105 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 14:28:28] 2025-11-25 19:27:56,153 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2106249999997
[2025-11-25 14:28:28] 2025-11-25 19:27:56,164 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895355596/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,165 | INFO     | extracted standard info from prmon json
[2025-11-25 14:28:28] 2025-11-25 19:27:56,165 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 14:28:28] 2025-11-25 19:27:56,165 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 14:28:28] 2025-11-25 19:27:56,181 | INFO     | fitting pss+swap vs Time
[2025-11-25 14:28:28] 2025-11-25 19:27:56,182 | INFO     | sum of square deviations: 184433888357.04172
[2025-11-25 14:28:28] 2025-11-25 19:27:56,200 | INFO     | sum of deviations: 1797859473732.7747
[2025-11-25 14:28:28] 2025-11-25 19:27:56,201 | INFO     | mean x: 1764073190.1141498
[2025-11-25 14:28:28] 2025-11-25 19:27:56,201 | INFO     | mean y: 2878010.3043995243
[2025-11-25 14:28:28] 2025-11-25 19:27:56,201 | INFO     | intersect: -17193287648.064053
[2025-11-25 14:28:28] 2025-11-25 19:27:56,202 | INFO     | chi2: 7.855167638285195
[2025-11-25 14:28:28] 2025-11-25 19:27:56,203 | INFO     | sum of square deviations: 181163954680.7969
[2025-11-25 14:28:28] 2025-11-25 19:27:56,221 | INFO     | sum of deviations: 2074886168984.9585
[2025-11-25 14:28:28] 2025-11-25 19:27:56,221 | INFO     | mean x: 1764073037.6208134
[2025-11-25 14:28:28] 2025-11-25 19:27:56,221 | INFO     | mean y: 2890934.0598086123
[2025-11-25 14:28:28] 2025-11-25 19:27:56,221 | INFO     | intersect: -20201187483.68015
[2025-11-25 14:28:28] 2025-11-25 19:27:56,223 | INFO     | chi2: 4.817280284244198
[2025-11-25 14:28:28] 2025-11-25 19:27:56,223 | INFO     | current chi2=4.817280284244198 (change=38.6737431195571 %)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,224 | INFO     | sum of square deviations: 177932905454.47928
[2025-11-25 14:28:28] 2025-11-25 19:27:56,241 | INFO     | sum of deviations: 2168143899096.0977
[2025-11-25 14:28:28] 2025-11-25 19:27:56,241 | INFO     | mean x: 1764072885.1275573
[2025-11-25 14:28:28] 2025-11-25 19:27:56,241 | INFO     | mean y: 2895330.895306859
[2025-11-25 14:28:28] 2025-11-25 19:27:56,242 | INFO     | intersect: -21492644539.48947
[2025-11-25 14:28:28] 2025-11-25 19:27:56,243 | INFO     | chi2: 4.2832605615001755
[2025-11-25 14:28:28] 2025-11-25 19:27:56,243 | INFO     | current chi2=4.2832605615001755 (change=11.085502425313146 %)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,243 | INFO     | right removable region: 830
[2025-11-25 14:28:28] 2025-11-25 19:27:56,244 | INFO     | sum of square deviations: 181163383110.79727
[2025-11-25 14:28:28] 2025-11-25 19:27:56,262 | INFO     | sum of deviations: 1483989000859.6023
[2025-11-25 14:28:28] 2025-11-25 19:27:56,262 | INFO     | mean x: 1764073342.6208134
[2025-11-25 14:28:28] 2025-11-25 19:27:56,262 | INFO     | mean y: 2892642.172248804
[2025-11-25 14:28:28] 2025-11-25 19:27:56,262 | INFO     | intersect: -14447408473.90851
[2025-11-25 14:28:28] 2025-11-25 19:27:56,263 | INFO     | chi2: 4.289701948766149
[2025-11-25 14:28:28] 2025-11-25 19:27:56,264 | INFO     | current chi2=4.289701948766149 (change=45.390064906334665 %)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,265 | INFO     | sum of square deviations: 177931965935.48032
[2025-11-25 14:28:28] 2025-11-25 19:27:56,282 | INFO     | sum of deviations: 1368318488913.0166
[2025-11-25 14:28:28] 2025-11-25 19:27:56,282 | INFO     | mean x: 1764073495.1227436
[2025-11-25 14:28:28] 2025-11-25 19:27:56,282 | INFO     | mean y: 2898091.6762936222
[2025-11-25 14:28:28] 2025-11-25 19:27:56,283 | INFO     | intersect: -13563041937.633146
[2025-11-25 14:28:28] 2025-11-25 19:27:56,284 | INFO     | chi2: 3.785453509170925
[2025-11-25 14:28:28] 2025-11-25 19:27:56,284 | INFO     | current chi2=3.785453509170925 (change=11.754859559421412 %)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,284 | INFO     | left removable region: 20
[2025-11-25 14:28:28] 2025-11-25 19:27:56,285 | INFO     | sum of square deviations: 164780536498.10007
[2025-11-25 14:28:28] 2025-11-25 19:27:56,302 | INFO     | sum of deviations: 1654509451653.333
[2025-11-25 14:28:28] 2025-11-25 19:27:56,302 | INFO     | mean x: 1764073464.6333334
[2025-11-25 14:28:28] 2025-11-25 19:27:56,302 | INFO     | mean y: 2920829.4691358022
[2025-11-25 14:28:28] 2025-11-25 19:27:56,302 | INFO     | intersect: -17709585044.550426
[2025-11-25 14:28:28] 2025-11-25 19:27:56,303 | INFO     | chi2: 0.10251729964560044
[2025-11-25 14:28:28] 2025-11-25 19:27:56,304 | INFO     | current memory leak: 10.04 B/s (using 810 data points, chi2=0.10)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | could have reported an average CPU frequency of 2600 MHz (32 samples)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | ..............................
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | . Timing measurements:
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | . get job = 0 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | . initial setup = 3 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | . payload setup = 23 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | . stage-in = 0 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | . payload execution = 51304 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,305 | INFO     | . stage-out = 3 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,306 | INFO     | . log creation = 0 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,306 | INFO     | ..............................
[2025-11-25 14:28:28] 2025-11-25 19:27:56,410 | INFO     | 
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | job summary report
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | --------------------------------------------------
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | PanDA job id: 6895355596
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | task id: 47556149
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | errors: (none)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | pilot state: finished 
[2025-11-25 14:28:28] 2025-11-25 19:27:56,411 | INFO     | transexitcode: 0
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | exeerrorcode: 0
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | exeerrordiag: 
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | exitcode: 0
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | exitmsg: OK
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | cpuconsumptiontime: 294507 s
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | nevents: 1000
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | neventsw: 0
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | pid: 3734987
[2025-11-25 14:28:28] 2025-11-25 19:27:56,412 | INFO     | pgrp: 3734987
[2025-11-25 14:28:28] 2025-11-25 19:27:56,413 | INFO     | corecount: 8
[2025-11-25 14:28:28] 2025-11-25 19:27:56,413 | INFO     | event service: False
[2025-11-25 14:28:28] 2025-11-25 19:27:56,413 | INFO     | sizes: {0: 2284081, 1: 2284280, 12: 2284280, 19: 2284570, 22: 2284598, 51332: 2334462, 51336: 2343461, 51338: 2343517, 51347: 2343763}
[2025-11-25 14:28:28] 2025-11-25 19:27:56,413 | INFO     | --------------------------------------------------
[2025-11-25 14:28:28] 2025-11-25 19:27:56,413 | INFO     | 
[2025-11-25 14:28:28] 2025-11-25 19:27:56,413 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 14:28:28] 2025-11-25 19:27:56,439 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,439 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,439 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,439 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 14:28:28] 2025-11-25 19:27:56,440 | INFO     | job 6895355596 has completed (purged errors)
[2025-11-25 14:28:28] 2025-11-25 19:27:56,441 | INFO     | overall cleanup function is called
[2025-11-25 14:28:28] 2025-11-25 19:27:57,453 | INFO     | --- collectZombieJob: --- 10, [3734987]
[2025-11-25 14:28:28] 2025-11-25 19:27:57,453 | INFO     | zombie collector waiting for pid 3734987
[2025-11-25 14:28:28] 2025-11-25 19:27:57,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 14:28:28] 2025-11-25 19:27:57,453 | INFO     | collected zombie processes
[2025-11-25 14:28:28] 2025-11-25 19:27:57,453 | INFO     | will attempt to kill all subprocesses of pid=3734987
[2025-11-25 14:28:28] 2025-11-25 19:27:57,926 | INFO     | process IDs to be killed: [3734987] (in reverse order)
[2025-11-25 14:28:28] 2025-11-25 19:27:58,069 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 14:28:28] 2025-11-25 19:27:58,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 14:28:28] 2025-11-25 19:27:58,086 | INFO     | did not find any defunct processes belonging to 3734987
[2025-11-25 14:28:28] 2025-11-25 19:27:58,100 | INFO     | did not find any defunct processes belonging to 3734987
[2025-11-25 14:28:28] 2025-11-25 19:27:58,102 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 14:28:28] 2025-11-25 19:27:58,102 | INFO     | ready for new job
[2025-11-25 14:28:28] 2025-11-25 19:27:58,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 14:28:28] 2025-11-25 19:27:58,106 | INFO     | ***************************************
[2025-11-25 14:28:28] 2025-11-25 19:27:58,106 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 14:28:28] 2025-11-25 19:27:58,107 | INFO     | ***************************************
[2025-11-25 14:28:28] 2025-11-25 19:27:58,107 | INFO     | 
[2025-11-25 14:28:28] 2025-11-25 19:27:58,108 | INFO     | architecture information:
[2025-11-25 14:28:28] 2025-11-25 19:27:58,109 | INFO     | executing command: cat /etc/os-release
[2025-11-25 14:28:28] 2025-11-25 19:27:58,143 | INFO     | cat /etc/os-release:
[2025-11-25 14:28:28] NAME="CentOS Linux"
[2025-11-25 14:28:28] VERSION="7 (Core)"
[2025-11-25 14:28:28] ID="centos"
[2025-11-25 14:28:28] ID_LIKE="rhel fedora"
[2025-11-25 14:28:28] VERSION_ID="7"
[2025-11-25 14:28:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 14:28:28] ANSI_COLOR="0;31"
[2025-11-25 14:28:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 14:28:28] HOME_URL="https://www.centos.org/"
[2025-11-25 14:28:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 14:28:28] 
[2025-11-25 14:28:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 14:28:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 14:28:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 14:28:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 14:28:28] 
[2025-11-25 14:28:28] 2025-11-25 19:27:58,144 | INFO     | ***************************************
[2025-11-25 14:28:28] 2025-11-25 19:27:58,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 14:28:28] 2025-11-25 19:27:58,667 | INFO     | sufficient remaining disk space (72229060608 B)
[2025-11-25 14:28:28] 2025-11-25 19:27:58,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:28:28] 2025-11-25 19:27:58,668 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:28:28] 2025-11-25 19:27:58,668 | INFO     | update_server=False
[2025-11-25 14:28:28] 2025-11-25 19:27:58,668 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:28:28] 2025-11-25 19:27:58,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:28:28] 2025-11-25 19:27:58,697 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:28:28] 2025-11-25 19:27:58,883 | INFO     | all data control threads have been joined
[2025-11-25 14:28:28] 2025-11-25 19:27:58,992 | INFO     | all job control threads have been joined
[2025-11-25 14:28:28] 2025-11-25 19:27:59,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:28:28] 2025-11-25 19:27:59,331 | INFO     | aborting loop
[2025-11-25 14:28:28] 2025-11-25 19:27:59,500 | INFO     | all payload control threads have been joined
[2025-11-25 14:28:28] 2025-11-25 19:27:59,673 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:27:59,891 | INFO     | [data] control thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:27:59,903 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:27:59,913 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:27:59,923 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:27:59,998 | INFO     | [job] control thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:00,215 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:00,313 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:00,336 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:00,362 | INFO     | [job] validate thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:00,505 | INFO     | [payload] control thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:00,703 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:00,963 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:01,010 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:01,432 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:28:28] 2025-11-25 19:28:02,449 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:02,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:28:28] 2025-11-25 19:28:02,976 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:28:28] 2025-11-25 19:28:04,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607203571520)>', '<ExcThread(monitor, started 140606860932864)>']
[2025-11-25 14:28:28] 2025-11-25 19:28:09,046 | INFO     | all workflow threads have been joined
[2025-11-25 14:28:28] 2025-11-25 19:28:09,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:28:28] 2025-11-25 19:28:09,047 | INFO     | traces error code: 0
[2025-11-25 14:28:28] 2025-11-25 19:28:09,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:28:28] 2025-11-25 19:28:28,572 | INFO     | PID=3723731 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 14:28:28] 2025-11-25 19:28:28,574 | INFO     | .. there are 40 such processes running
[2025-11-25 14:28:28] 2025-11-25 19:28:28,574 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:28:28] 2025-11-25 19:28:28,574 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:28:28] 2025-11-25 19:28:28,574 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:28:28] 2025-11-25 19:28:28,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:28:28] 2025-11-25 19:28:28,574 | INFO     | [monitor] control thread has ended
[2025-11-25 14:28:28] 2025-11-25 19:28:28,719 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:28:28] 2025-11-25 19:28:28,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:28:28] 2025-11-25 19:28:28,725 [wrapper] pilotpid: 3723731
[2025-11-25 14:28:28] 2025-11-25 19:28:28,727 [wrapper] Pilot exit status: 0
[2025-11-25 14:28:28] 2025-11-25 19:28:28,784 [wrapper] pandaids: 6895355596
[2025-11-25 14:28:28] 2025-11-25 19:28:28,861 [wrapper] cleanup supervisor_pilot 2426228 3723732
[2025-11-25 14:28:28] 2025-11-25 19:28:28,865 [wrapper] Test setup, not cleaning
[2025-11-25 14:28:28] 2025-11-25 19:28:28,867 [wrapper] apfmon messages muted
[2025-11-25 14:28:28] 2025-11-25 19:28:28,870 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:28:28] 2025-11-25 19:28:28,883 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:28:28]  *** Error codes and diagnostics ***
[2025-11-25 14:28:28]     "exeErrorCode": 0,
[2025-11-25 14:28:28]     "exeErrorDiag": "",
[2025-11-25 14:28:28]     "pilotErrorCode": 0,
[2025-11-25 14:28:28]     "pilotErrorDiag": "",
[2025-11-25 14:28:28]  *** Listing of results directory ***
[2025-11-25 14:28:28] total 1313764
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-25 14:28:28] -rwx------. 1 boincer umatlas     36292 Nov 23 03:04 runpilot2-wrapper.sh
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 03:04 queuedata.json
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:28:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:10 run_atlas
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:10 job.xml
[2025-11-25 14:28:28] -rw-r--r--. 2 boincer umatlas 408846349 Nov 25 00:11 EVNT.47483658._001148.pool.root.1
[2025-11-25 14:28:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 14:28:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:11 shared
[2025-11-25 14:28:28] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:11 input.tar.gz
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:11 boinc_lockfile
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas      2781 Nov 25 00:11 pandaJob.out
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas        57 Nov 25 00:11 setup.sh.local
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas    991801 Nov 25 00:11 agis_schedconf.cvmfs.json
[2025-11-25 14:28:28] drwx------. 5 boincer umatlas      4096 Nov 25 00:11 pilot3
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas       533 Nov 25 14:15 boinc_task_state.xml
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas      6656 Nov 25 14:19 init_data.xml
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas 914693275 Nov 25 14:27 HITS.47556149._001341.pool.root.1
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas      1058 Nov 25 14:27 memory_monitor_summary.json
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas   1516240 Nov 25 14:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas   2054429 Nov 25 14:27 log.47556149._001341.job.log.tgz.1
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas        95 Nov 25 14:27 pilot_heartbeat.json
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas      8609 Nov 25 14:27 heartbeat.json
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 14:28 boinc_mmap_file
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas        29 Nov 25 14:28 wrapper_checkpoint.txt
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas       823 Nov 25 14:28 pilotlog.txt
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas   6864761 Nov 25 14:28 log.47556149._001341.job.log.1
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas       353 Nov 25 14:28 output.list
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas       620 Nov 25 14:28 runtime_log
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas   8939520 Nov 25 14:28 result.tar.gz
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 14:28 runtime_log.err
[2025-11-25 14:28:28] -rw-------. 1 boincer umatlas       657 Nov 25 14:28 K9uLDm9FKh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAUIKDmhTmNIo.diag
[2025-11-25 14:28:28] -rw-r--r--. 1 boincer umatlas     21362 Nov 25 14:28 stderr.txt
[2025-11-25 14:28:29] HITS file was successfully produced:
[2025-11-25 14:28:29] -rw-------. 1 boincer umatlas 914693275 Nov 25 14:27 shared/HITS.pool.root.1
[2025-11-25 14:28:29]  *** Contents of shared directory: ***
[2025-11-25 14:28:29] total 1301856
[2025-11-25 14:28:29] -rw-r--r--. 2 boincer umatlas 408846349 Nov 25 00:11 ATLAS.root_0
[2025-11-25 14:28:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 14:28:29] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:11 input.tar.gz
[2025-11-25 14:28:29] -rw-------. 1 boincer umatlas 914693275 Nov 25 14:27 HITS.pool.root.1
[2025-11-25 14:28:29] -rw-------. 1 boincer umatlas   8939520 Nov 25 14:28 result.tar.gz
14:28:30 (3719913): run_atlas exited; CPU time 296117.903632
14:28:30 (3719913): called boinc_finish(0)

</stderr_txt>
]]>

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