Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:47 (1566707): wrapper (7.7.26015): starting
00:11:47 (1566707): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:11:47] Arguments: --nthreads 8
[2025-11-25 00:11:47] Threads: 8
[2025-11-25 00:11:47] Checking for CVMFS
[2025-11-25 00:11:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:11:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:11:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:11:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:11:49] 2.13.3.0 9371 28039 143964 153270 1 410 29522364 32935937 26933 16776704 0 152210711 99.773 88085371 34374 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:11:49] CVMFS is ok
[2025-11-25 00:11:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:11:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:11:49] Further information can be found at the LHC@home message board.
[2025-11-25 00:11:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:11:49] Checking for apptainer binary...
[2025-11-25 00:11:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:11:49] Running /usr/bin/apptainer --version
[2025-11-25 00:11:49] apptainer version 1.4.4-1.el9
[2025-11-25 00:11:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:11:49] c-8-1.aglt2.org
[2025-11-25 00:11:49] apptainer works
[2025-11-25 00:11:49] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:11:49] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:11:49] Starting ATLAS job with PandaID=6895386418
[2025-11-25 00:11:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:41:45]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:41:45] 2025-11-26 02:41:08,133 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:41:45] 2025-11-26 02:41:08,139 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2619.7534000000005
[2025-11-25 21:41:45] 2025-11-26 02:41:08,145 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895386418/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,146 | INFO     | extracted standard info from prmon json
[2025-11-25 21:41:45] 2025-11-26 02:41:08,146 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:41:45] 2025-11-26 02:41:08,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:41:45] 2025-11-26 02:41:08,168 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:41:45] 2025-11-26 02:41:08,170 | INFO     | sum of square deviations: 629188543699.5768
[2025-11-25 21:41:45] 2025-11-26 02:41:08,170 | INFO     | monitor loop #5215: job 0:6895386418 is in state 'finished'
[2025-11-25 21:41:45] 2025-11-26 02:41:08,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,215 | INFO     | sum of deviations: 3568777680662.9336
[2025-11-25 21:41:45] 2025-11-26 02:41:08,215 | INFO     | mean x: 1764086210.1808846
[2025-11-25 21:41:45] 2025-11-26 02:41:08,215 | INFO     | mean y: 2937097.2535545025
[2025-11-25 21:41:45] 2025-11-26 02:41:08,216 | INFO     | intersect: -10003016693.069782
[2025-11-25 21:41:45] 2025-11-26 02:41:08,217 | INFO     | chi2: 8.701043934566439
[2025-11-25 21:41:45] 2025-11-26 02:41:08,219 | INFO     | sum of square deviations: 621763392964.7505
[2025-11-25 21:41:45] 2025-11-26 02:41:08,258 | INFO     | time since job start (77321s) is within the limit (172800.0s)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,259 | INFO     | sum of deviations: 4009581436353.026
[2025-11-25 21:41:45] 2025-11-26 02:41:08,260 | INFO     | mean x: 1764086057.6835845
[2025-11-25 21:41:45] 2025-11-26 02:41:08,260 | INFO     | mean y: 2946151.9048374305
[2025-11-25 21:41:45] 2025-11-26 02:41:08,260 | INFO     | intersect: -11373160561.759947
[2025-11-25 21:41:45] 2025-11-26 02:41:08,262 | INFO     | chi2: 5.457103262437952
[2025-11-25 21:41:45] 2025-11-26 02:41:08,262 | INFO     | current chi2=5.457103262437952 (change=37.28220080858755 %)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,264 | INFO     | sum of square deviations: 614396894492.4048
[2025-11-25 21:41:45] 2025-11-26 02:41:08,303 | INFO     | sum of deviations: 4222237431138.816
[2025-11-25 21:41:45] 2025-11-26 02:41:08,303 | INFO     | mean x: 1764085905.1863058
[2025-11-25 21:41:45] 2025-11-26 02:41:08,303 | INFO     | mean y: 2950552.9665605095
[2025-11-25 21:41:45] 2025-11-26 02:41:08,303 | INFO     | intersect: -12120140574.92015
[2025-11-25 21:41:45] 2025-11-26 02:41:08,305 | INFO     | chi2: 4.539384594685246
[2025-11-25 21:41:45] 2025-11-26 02:41:08,305 | INFO     | current chi2=4.539384594685246 (change=16.81695624250872 %)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,305 | INFO     | right removable region: 1255
[2025-11-25 21:41:45] 2025-11-26 02:41:08,307 | INFO     | sum of square deviations: 621762867144.75
[2025-11-25 21:41:45] 2025-11-26 02:41:08,346 | INFO     | sum of deviations: 3105545309078.1562
[2025-11-25 21:41:45] 2025-11-26 02:41:08,347 | INFO     | mean x: 1764086362.6835845
[2025-11-25 21:41:45] 2025-11-26 02:41:08,347 | INFO     | mean y: 2946608.524187153
[2025-11-25 21:41:45] 2025-11-26 02:41:08,347 | INFO     | intersect: -8808210213.36646
[2025-11-25 21:41:45] 2025-11-26 02:41:08,349 | INFO     | chi2: 5.41888463400973
[2025-11-25 21:41:45] 2025-11-26 02:41:08,349 | INFO     | current chi2=5.41888463400973 (change=37.72144268250099 %)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,351 | INFO     | sum of square deviations: 614395996573.1492
[2025-11-25 21:41:45] 2025-11-26 02:41:08,390 | INFO     | sum of deviations: 2916758333320.193
[2025-11-25 21:41:45] 2025-11-26 02:41:08,390 | INFO     | mean x: 1764086515.1847134
[2025-11-25 21:41:45] 2025-11-26 02:41:08,390 | INFO     | mean y: 2950512.4474522294
[2025-11-25 21:41:45] 2025-11-26 02:41:08,391 | INFO     | intersect: -8371801394.403856
[2025-11-25 21:41:45] 2025-11-26 02:41:08,392 | INFO     | chi2: 4.852343817228595
[2025-11-25 21:41:45] 2025-11-26 02:41:08,393 | INFO     | current chi2=4.852343817228595 (change=10.454934087827597 %)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,393 | INFO     | left removable region: 20
[2025-11-25 21:41:45] 2025-11-26 02:41:08,394 | INFO     | sum of square deviations: 584091339425.4607
[2025-11-25 21:41:45] 2025-11-26 02:41:08,433 | INFO     | sum of deviations: 3434023164588.7695
[2025-11-25 21:41:45] 2025-11-26 02:41:08,433 | INFO     | mean x: 1764086484.691498
[2025-11-25 21:41:45] 2025-11-26 02:41:08,433 | INFO     | mean y: 2968708.4639676115
[2025-11-25 21:41:45] 2025-11-26 02:41:08,433 | INFO     | intersect: -10368549312.548672
[2025-11-25 21:41:45] 2025-11-26 02:41:08,435 | INFO     | chi2: 0.4356762518724966
[2025-11-25 21:41:45] 2025-11-26 02:41:08,435 | INFO     | current memory leak: 5.88 B/s (using 1235 data points, chi2=0.44)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,437 | INFO     | could have reported an average CPU frequency of 2600 MHz (46 samples)
[2025-11-25 21:41:45] 2025-11-26 02:41:08,437 | INFO     | ..............................
[2025-11-25 21:41:45] 2025-11-26 02:41:08,437 | INFO     | . Timing measurements:
[2025-11-25 21:41:45] 2025-11-26 02:41:08,437 | INFO     | . get job = 0 s
[2025-11-25 21:41:45] 2025-11-26 02:41:08,437 | INFO     | . initial setup = 5 s
[2025-11-25 21:41:45] 2025-11-26 02:41:08,438 | INFO     | . payload setup = 26 s
[2025-11-25 21:41:45] 2025-11-26 02:41:08,438 | INFO     | . stage-in = 0 s
[2025-11-25 21:41:45] 2025-11-26 02:41:08,438 | INFO     | . payload execution = 77238 s
[2025-11-25 21:41:45] 2025-11-26 02:41:08,438 | INFO     | . stage-out = 4 s
[2025-11-25 21:41:45] 2025-11-26 02:41:08,438 | INFO     | . log creation = 1 s
[2025-11-25 21:41:45] 2025-11-26 02:41:08,438 | INFO     | ..............................
[2025-11-25 21:41:45] 2025-11-26 02:41:09,031 | INFO     | 
[2025-11-25 21:41:45] 2025-11-26 02:41:09,031 | INFO     | job summary report
[2025-11-25 21:41:45] 2025-11-26 02:41:09,032 | INFO     | --------------------------------------------------
[2025-11-25 21:41:45] 2025-11-26 02:41:09,032 | INFO     | PanDA job id: 6895386418
[2025-11-25 21:41:45] 2025-11-26 02:41:09,032 | INFO     | task id: 47556149
[2025-11-25 21:41:45] 2025-11-26 02:41:09,032 | INFO     | errors: (none)
[2025-11-25 21:41:45] 2025-11-26 02:41:09,036 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:41:45] 2025-11-26 02:41:09,036 | INFO     | pilot state: finished 
[2025-11-25 21:41:45] 2025-11-26 02:41:09,036 | INFO     | transexitcode: 0
[2025-11-25 21:41:45] 2025-11-26 02:41:09,036 | INFO     | exeerrorcode: 0
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | exeerrordiag: 
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | exitcode: 0
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | exitmsg: OK
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | cpuconsumptiontime: 309624 s
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | nevents: 1000
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | neventsw: 0
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | pid: 1579721
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | pgrp: 1579721
[2025-11-25 21:41:45] 2025-11-26 02:41:09,037 | INFO     | corecount: 8
[2025-11-25 21:41:45] 2025-11-26 02:41:09,038 | INFO     | event service: False
[2025-11-25 21:41:45] 2025-11-26 02:41:09,038 | INFO     | sizes: {0: 2284133, 1: 2284332, 12: 2284332, 14: 2284622, 23: 2284650, 77269: 2346699, 77270: 2346826, 77275: 2355881, 77276: 2355937, 77286: 2356183}
[2025-11-25 21:41:45] 2025-11-26 02:41:09,038 | INFO     | --------------------------------------------------
[2025-11-25 21:41:45] 2025-11-26 02:41:09,038 | INFO     | 
[2025-11-25 21:41:45] 2025-11-26 02:41:09,038 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 21:41:45] 2025-11-26 02:41:09,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,070 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,070 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,070 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,072 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:41:45] 2025-11-26 02:41:09,072 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,072 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:41:45] 2025-11-26 02:41:09,072 | INFO     | job 6895386418 has completed (purged errors)
[2025-11-25 21:41:45] 2025-11-26 02:41:09,072 | INFO     | overall cleanup function is called
[2025-11-25 21:41:45] 2025-11-26 02:41:10,087 | INFO     | --- collectZombieJob: --- 10, [1579721]
[2025-11-25 21:41:45] 2025-11-26 02:41:10,087 | INFO     | zombie collector waiting for pid 1579721
[2025-11-25 21:41:45] 2025-11-26 02:41:10,087 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:41:45] 2025-11-26 02:41:10,088 | INFO     | collected zombie processes
[2025-11-25 21:41:45] 2025-11-26 02:41:10,088 | INFO     | will attempt to kill all subprocesses of pid=1579721
[2025-11-25 21:41:45] 2025-11-26 02:41:10,659 | INFO     | process IDs to be killed: [1579721] (in reverse order)
[2025-11-25 21:41:45] 2025-11-26 02:41:10,808 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:41:45] 2025-11-26 02:41:10,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:41:45] 2025-11-26 02:41:10,824 | INFO     | did not find any defunct processes belonging to 1579721
[2025-11-25 21:41:45] 2025-11-26 02:41:10,840 | INFO     | did not find any defunct processes belonging to 1579721
[2025-11-25 21:41:45] 2025-11-26 02:41:10,842 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:41:45] 2025-11-26 02:41:10,842 | INFO     | ready for new job
[2025-11-25 21:41:45] 2025-11-26 02:41:10,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:41:45] 2025-11-26 02:41:10,848 | INFO     | ***************************************
[2025-11-25 21:41:45] 2025-11-26 02:41:10,848 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:41:45] 2025-11-26 02:41:10,848 | INFO     | ***************************************
[2025-11-25 21:41:45] 2025-11-26 02:41:10,848 | INFO     | 
[2025-11-25 21:41:45] 2025-11-26 02:41:10,850 | INFO     | architecture information:
[2025-11-25 21:41:45] 2025-11-26 02:41:10,851 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:41:45] 2025-11-26 02:41:10,869 | INFO     | cat /etc/os-release:
[2025-11-25 21:41:45] NAME="CentOS Linux"
[2025-11-25 21:41:45] VERSION="7 (Core)"
[2025-11-25 21:41:45] ID="centos"
[2025-11-25 21:41:45] ID_LIKE="rhel fedora"
[2025-11-25 21:41:45] VERSION_ID="7"
[2025-11-25 21:41:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:41:45] ANSI_COLOR="0;31"
[2025-11-25 21:41:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:41:45] HOME_URL="https://www.centos.org/"
[2025-11-25 21:41:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:41:45] 
[2025-11-25 21:41:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:41:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:41:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:41:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:41:45] 
[2025-11-25 21:41:45] 2025-11-26 02:41:10,870 | INFO     | ***************************************
[2025-11-25 21:41:45] 2025-11-26 02:41:11,373 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 21:41:45] 2025-11-26 02:41:11,402 | INFO     | sufficient remaining disk space (70778880000 B)
[2025-11-25 21:41:45] 2025-11-26 02:41:11,402 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:41:45] 2025-11-26 02:41:11,402 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:41:45] 2025-11-26 02:41:11,403 | INFO     | update_server=False
[2025-11-25 21:41:45] 2025-11-26 02:41:11,403 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:41:45] 2025-11-26 02:41:11,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:41:45] 2025-11-26 02:41:11,723 | INFO     | aborting loop
[2025-11-25 21:41:45] 2025-11-26 02:41:12,089 | INFO     | all payload control threads have been joined
[2025-11-25 21:41:45] 2025-11-26 02:41:12,152 | INFO     | all data control threads have been joined
[2025-11-25 21:41:45] 2025-11-26 02:41:12,407 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:12,725 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:12,727 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:12,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:41:45] 2025-11-26 02:41:12,914 | INFO     | all job control threads have been joined
[2025-11-25 21:41:45] 2025-11-26 02:41:13,095 | INFO     | [payload] control thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,158 | INFO     | [data] control thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,279 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,525 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:41:45] 2025-11-26 02:41:13,567 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:41:45] 2025-11-26 02:41:13,647 | INFO     | [job] validate thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,729 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,780 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,839 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:13,920 | INFO     | [job] control thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:14,567 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:14,897 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:17,578 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:41:45] 2025-11-26 02:41:39,839 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:41:45] 2025-11-26 02:41:40,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140164544304960)>', '<ExcThread(monitor, started 140163841783552)>']
[2025-11-25 21:41:45] 2025-11-26 02:41:41,927 | INFO     | PID=1571273 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 21:41:45] 2025-11-26 02:41:41,928 | INFO     | .. there are 43 such processes running
[2025-11-25 21:41:45] 2025-11-26 02:41:41,928 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:41:45] 2025-11-26 02:41:41,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:41:45] 2025-11-26 02:41:41,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:41:45] 2025-11-26 02:41:41,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:41:45] 2025-11-26 02:41:41,928 | INFO     | [monitor] control thread has ended
[2025-11-25 21:41:45] 2025-11-26 02:41:45,204 | INFO     | all workflow threads have been joined
[2025-11-25 21:41:45] 2025-11-26 02:41:45,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:41:45] 2025-11-26 02:41:45,205 | INFO     | traces error code: 0
[2025-11-25 21:41:45] 2025-11-26 02:41:45,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:41:45] 2025-11-26 02:41:45,536 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:41:45] 2025-11-26 02:41:45,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:41:45] 2025-11-26 02:41:45,543 [wrapper] pilotpid: 1571273
[2025-11-25 21:41:45] 2025-11-26 02:41:45,547 [wrapper] Pilot exit status: 0
[2025-11-25 21:41:45] 2025-11-26 02:41:45,579 [wrapper] pandaids: 6895386418
[2025-11-25 21:41:45] 2025-11-26 02:41:45,673 [wrapper] cleanup supervisor_pilot 1606434 1571274
[2025-11-25 21:41:45] 2025-11-26 02:41:45,676 [wrapper] Test setup, not cleaning
[2025-11-25 21:41:45] 2025-11-26 02:41:45,679 [wrapper] apfmon messages muted
[2025-11-25 21:41:45] 2025-11-26 02:41:45,683 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:41:45] 2025-11-26 02:41:45,685 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:41:45]  *** Error codes and diagnostics ***
[2025-11-25 21:41:45]     "exeErrorCode": 0,
[2025-11-25 21:41:45]     "exeErrorDiag": "",
[2025-11-25 21:41:45]     "pilotErrorCode": 0,
[2025-11-25 21:41:45]     "pilotErrorDiag": "",
[2025-11-25 21:41:45]  *** Listing of results directory ***
[2025-11-25 21:41:45] total 1324200
[2025-11-25 21:41:45] -rwx------. 1 boincer umatlas     36292 Nov 24 00:14 runpilot2-wrapper.sh
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:14 queuedata.json
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:41:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:11 run_atlas
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:11 job.xml
[2025-11-25 21:41:45] -rw-r--r--. 2 boincer umatlas 408941869 Nov 25 00:11 EVNT.47483658._001241.pool.root.1
[2025-11-25 21:41:45] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:11 input.tar.gz
[2025-11-25 21:41:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 21:41:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:11 shared
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:11 boinc_lockfile
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 00:11 pandaJob.out
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas        57 Nov 25 00:11 setup.sh.local
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas    991801 Nov 25 00:12 agis_schedconf.cvmfs.json
[2025-11-25 21:41:45] drwx------. 5 boincer umatlas      4096 Nov 25 00:12 pilot3
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas       533 Nov 25 21:23 boinc_task_state.xml
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas 917287429 Nov 25 21:40 HITS.47556149._002271.pool.root.1
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas      6659 Nov 25 21:40 init_data.xml
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas      1066 Nov 25 21:40 memory_monitor_summary.json
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas        95 Nov 25 21:40 pilot_heartbeat.json
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas   1516240 Nov 25 21:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas   2398298 Nov 25 21:40 log.47556149._002271.job.log.tgz.1
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas      7953 Nov 25 21:41 heartbeat.json
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:41 boinc_mmap_file
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas      4824 Nov 25 21:41 pilotlog.txt
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas        29 Nov 25 21:41 wrapper_checkpoint.txt
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas  10515294 Nov 25 21:41 log.47556149._002271.job.log.1
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas       353 Nov 25 21:41 output.list
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas       620 Nov 25 21:41 runtime_log
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas  12933120 Nov 25 21:41 result.tar.gz
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 21:41 runtime_log.err
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas       660 Nov 25 21:41 M4wMDmn5dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAwIKDm7B0x8m.diag
[2025-11-25 21:41:45] -rw-r--r--. 1 boincer umatlas     21362 Nov 25 21:41 stderr.txt
[2025-11-25 21:41:45] HITS file was successfully produced:
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas 917287429 Nov 25 21:40 shared/HITS.pool.root.1
[2025-11-25 21:41:45]  *** Contents of shared directory: ***
[2025-11-25 21:41:45] total 1308388
[2025-11-25 21:41:45] -rw-r--r--. 2 boincer umatlas 408941869 Nov 25 00:11 ATLAS.root_0
[2025-11-25 21:41:45] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 00:11 input.tar.gz
[2025-11-25 21:41:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas 917287429 Nov 25 21:40 HITS.pool.root.1
[2025-11-25 21:41:45] -rw-------. 1 boincer umatlas  12933120 Nov 25 21:41 result.tar.gz
21:41:47 (1566707): run_atlas exited; CPU time 311708.440822
21:41:47 (1566707): called boinc_finish(0)

</stderr_txt>
]]>

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